Guide to the Human Genome
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Name: DEFB111 Sequence: fasta or formatted (67aa) NCBI GI: 82734214
Description:

beta-defensin 111

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          2           1
 C cysteine            9.0          6           2
 D aspartate           1.5          1           1
 E glutamate           6.0          4           1
 F phenylalanine       6.0          4           3
 G glycine             6.0          4           1
 H histidine           4.5          3           1
 I isoleucine         10.4          7           1
 K lysine              7.5          5           3
 L leucine             9.0          6           1
 M methionine          1.5          1           1
 N asparagine          4.5          3           1
 P proline             4.5          3           1
 Q glutamine           7.5          5           2
 R arginine            7.5          5           2
 S serine              1.5          1           1
 T threonine           3.0          2           1
 V valine              1.5          1           1
 W tryptophan          1.5          1           1
 Y tyrosine            4.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-defensin 111 
DEFB110               0.302   beta-defensin 110 
DEFB112               0.206   beta-defensin 112 
DEFB133               0.111   PREDICTED: defensin, beta 133 
DEFB133               0.111   PREDICTED: defensin, beta 133 
DEFB133               0.111   PREDICTED: beta-defensin 133 
LOC100133128          0.111   PREDICTED: hypothetical protein 
DEFB108B              0.111   beta-defensin 108B 
LOC100133128          0.103   PREDICTED: hypothetical protein 
LOC100133128          0.103   PREDICTED: hypothetical protein 
DEFB106A              0.071   defensin, beta 106A precursor 
DEFB104A              0.071   defensin, beta 104A precursor 
DEFB106B              0.071   defensin, beta 106B precursor 
DEFB104B              0.071   defensin, beta 104B precursor 
DEFB113               0.063   beta-defensin 113 
DEFB105A              0.063   defensin, beta 105A precursor 
DEFB105B              0.063   defensin, beta 105B precursor 
DEFB134               0.056   beta-defensin 134 
SPAG11B               0.056   sperm associated antigen 11B isoform C preproprotein...
DEFB114               0.056   beta-defensin 114 
LOC100290235          0.032   PREDICTED: hypothetical protein XP_002347009 
DEFB119               0.032   defensin, beta 119 isoform a precursor 
RSL24D1               0.024   ribosomal protein L24-like 
DEFB116               0.024   beta-defensin 116 
SCUBE3                0.016   signal peptide, CUB domain, EGF-like 3 
DEFB127               0.016   defensin, beta 127 preproprotein 
DEFB129               0.008   beta defensin 129 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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