Guide to the Human Genome
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Name: DEFB113 Sequence: fasta or formatted (82aa) NCBI GI: 83582796
Description:

beta-defensin 113

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          3           1
 C cysteine            9.8          8           2
 D aspartate           0.0          0           0
 E glutamate           7.3          6           1
 F phenylalanine       3.7          3           1
 G glycine             2.4          2           1
 H histidine           1.2          1           1
 I isoleucine          6.1          5           2
 K lysine             11.0          9           2
 L leucine             4.9          4           1
 M methionine          1.2          1           1
 N asparagine          4.9          4           1
 P proline             6.1          5           1
 Q glutamine           4.9          4           1
 R arginine            4.9          4           1
 S serine              4.9          4           1
 T threonine           4.9          4           1
 V valine              9.8          8           1
 W tryptophan          2.4          2           1
 Y tyrosine            6.1          5           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-defensin 113 
DEFB110               0.076   beta-defensin 110 
DEFB111               0.051   beta-defensin 111 
DEFB123               0.032   defensin, beta 123 precursor 
FBN2                  0.025   fibrillin 2 precursor 
BRE                   0.019   brain and reproductive organ-expressed (TNFRSF1A mod...
DEFB116               0.019   beta-defensin 116 
DEFB119               0.019   defensin, beta 119 isoform a precursor 
LOC100293245          0.019   PREDICTED: similar to beta-defensin 130 
LOC100290863          0.019   PREDICTED: hypothetical protein XP_002346650 
LOC100288554          0.019   PREDICTED: hypothetical protein XP_002342487 
DEFB135               0.013   beta-defensin 135 
FBN1                  0.013   fibrillin 1 precursor 
RCC1                  0.013   regulator of chromosome condensation 1 isoform a [H...
DEFB117               0.013   PREDICTED: defensin, beta 117 
DEFB117               0.013   PREDICTED: defensin, beta 117 
DEFB117               0.013   PREDICTED: defensin, beta 117 
DEFB112               0.013   beta-defensin 112 
DEFB129               0.013   beta defensin 129 precursor 
SCAMP3                0.006   secretory carrier membrane protein 3 isoform 2 [Homo...
SCAMP3                0.006   secretory carrier membrane protein 3 isoform 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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