Guide to the Human Genome
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Name: CLCA4 Sequence: fasta or formatted (919aa) NCBI GI: 150036262
Description:

chloride channel accessory 4

Referenced in:

Chloride Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         59           2
 C cysteine            1.3         12           1
 D aspartate           5.9         54           2
 E glutamate           5.8         53           2
 F phenylalanine       4.7         43           3
 G glycine             6.1         56           2
 H histidine           2.0         18           1
 I isoleucine          7.3         67           2
 K lysine              5.8         53           2
 L leucine             7.7         71           3
 M methionine          1.6         15           1
 N asparagine          6.2         57           3
 P proline             6.0         55           5
 Q glutamine           3.6         33           1
 R arginine            3.2         29           1
 S serine              8.6         79           2
 T threonine           7.5         69           2
 V valine              6.7         62           2
 W tryptophan          1.2         11           1
 Y tyrosine            2.5         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chloride channel accessory 4 
CLCA1                 0.594   chloride channel accessory 1 precursor 
CLCA2                 0.393   chloride channel accessory 2 precursor 
HECTD1                0.006   HECT domain containing 1 
ANTXR2                0.005   anthrax toxin receptor 2 isoform 2 
ANTXR2                0.005   anthrax toxin receptor 2 isoform 1 
AP3B1                 0.005   adaptor-related protein complex 3, beta 1 subunit [H...
C5orf15               0.004   keratinocytes associated transmembrane protein 2 [Hom...
OLFM4                 0.004   olfactomedin 4 precursor 
ZCCHC2                0.004   zinc finger, CCHC domain containing 2 
ITIH4                 0.004   inter-alpha (globulin) inhibitor H4 
RFX7                  0.003   regulatory factor X domain containing 2 
REPS2                 0.003   RALBP1 associated Eps domain containing 2 isoform 2...
REPS2                 0.003   RALBP1 associated Eps domain containing 2 isoform 1...
PKD1L1                0.003   polycystin-1L1 
ELF4                  0.003   E74-like factor 4 
ELF4                  0.003   E74-like factor 4 
ANKRD44               0.003   ankyrin repeat domain 44 
ITIH3                 0.003   inter-alpha (globulin) inhibitor H3 preproprotein [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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