Guide to the Human Genome
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Name: DEFB119 Sequence: fasta or formatted (43aa) NCBI GI: 37704384
Description:

defensin, beta 119 isoform b

Referenced in:

Additional Host Defense Functions

Other entries for this name:
alt prot [88aa] defensin, beta 119 isoform c precursor
alt prot [84aa] defensin, beta 119 isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3          4           1
 C cysteine            4.7          2           2
 D aspartate           2.3          1           1
 E glutamate           4.7          2           2
 F phenylalanine       2.3          1           1
 G glycine             4.7          2           1
 H histidine           4.7          2           1
 I isoleucine          7.0          3           1
 K lysine              2.3          1           1
 L leucine            18.6          8           2
 M methionine          4.7          2           1
 N asparagine          0.0          0           0
 P proline             7.0          3           1
 Q glutamine           2.3          1           1
 R arginine            4.7          2           1
 S serine              4.7          2           1
 T threonine           7.0          3           1
 V valine              7.0          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, beta 119 isoform b 
DEFB119               0.246   defensin, beta 119 isoform a precursor 
DEFB119               0.231   defensin, beta 119 isoform c precursor 
TMEM108               0.015   transmembrane protein 108 
TMEM108               0.015   transmembrane protein 108 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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