Guide to the Human Genome
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Name: DEFB123 Sequence: fasta or formatted (67aa) NCBI GI: 23503331
Description:

defensin, beta 123 precursor

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            9.0          6           2
 D aspartate           0.0          0           0
 E glutamate           3.0          2           1
 F phenylalanine       1.5          1           1
 G glycine             4.5          3           2
 H histidine           0.0          0           0
 I isoleucine          1.5          1           1
 K lysine             11.9          8           2
 L leucine            16.4         11           4
 M methionine          3.0          2           1
 N asparagine          4.5          3           2
 P proline             6.0          4           1
 Q glutamine           4.5          3           1
 R arginine            7.5          5           1
 S serine              3.0          2           1
 T threonine           6.0          4           1
 V valine              6.0          4           1
 W tryptophan          4.5          3           2
 Y tyrosine            7.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, beta 123 precursor 
DEFB121               0.331   defensin, beta 121 
DEFB118               0.228   beta-defensin 118 
DEFB135               0.205   beta-defensin 135 
DEFB116               0.173   beta-defensin 116 
DEFB125               0.165   defensin, beta 125 preproprotein 
DEFB119               0.165   defensin, beta 119 isoform a precursor 
DEFB115               0.150   beta-defensin 115 
DEFB119               0.134   defensin, beta 119 isoform c precursor 
DEFB124               0.126   beta-defensin 124 
DEFB128               0.126   beta-defensin 128 
DEFB132               0.118   beta-defensin 32 precursor 
LOC100287066          0.079   PREDICTED: hypothetical protein XP_002342880 
LOC100128174          0.079   PREDICTED: similar to defensin, beta 131 
LOC100128174          0.079   PREDICTED: hypothetical protein 
LOC100128174          0.079   PREDICTED: similar to defensin, beta 131 
DEFB127               0.079   defensin, beta 127 preproprotein 
LOC100129216          0.071   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.071   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.071   PREDICTED: similar to defensin, beta 131 
LOC100133128          0.071   PREDICTED: hypothetical protein 
DEFB108B              0.071   beta-defensin 108B 
DEFB129               0.071   beta defensin 129 precursor 
DEFB117               0.063   PREDICTED: defensin, beta 117 
DEFB117               0.063   PREDICTED: defensin, beta 117 
DEFB117               0.063   PREDICTED: defensin, beta 117 
LOC100133128          0.063   PREDICTED: hypothetical protein 
LOC100133128          0.063   PREDICTED: hypothetical protein 
DEFB131               0.063   defensin, beta 131 
DEFB114               0.055   beta-defensin 114 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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