Guide to the Human Genome
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Name: DEFB105B Sequence: fasta or formatted (78aa) NCBI GI: 103485141
Description:

defensin, beta 105B precursor

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          4           1
 C cysteine           10.3          8           2
 D aspartate           2.6          2           1
 E glutamate           6.4          5           1
 F phenylalanine      11.5          9           2
 G glycine             7.7          6           1
 H histidine           0.0          0           0
 I isoleucine          3.8          3           1
 K lysine              6.4          5           1
 L leucine            11.5          9           1
 M methionine          2.6          2           1
 N asparagine          3.8          3           1
 P proline             5.1          4           1
 Q glutamine           5.1          4           1
 R arginine            7.7          6           1
 S serine              5.1          4           1
 T threonine           1.3          1           1
 V valine              2.6          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, beta 105B precursor 
DEFB105A              1.000   defensin, beta 105A precursor 
DEFB133               0.103   PREDICTED: defensin, beta 133 
DEFB133               0.103   PREDICTED: defensin, beta 133 
DEFB133               0.103   PREDICTED: beta-defensin 133 
DEFB106A              0.069   defensin, beta 106A precursor 
DEFB114               0.069   beta-defensin 114 
DEFB106B              0.069   defensin, beta 106B precursor 
DEFB104A              0.055   defensin, beta 104A precursor 
DEFB104B              0.055   defensin, beta 104B precursor 
DEFB115               0.055   beta-defensin 115 
DEFB111               0.055   beta-defensin 111 
LOC100133128          0.048   PREDICTED: hypothetical protein 
LOC100133128          0.048   PREDICTED: hypothetical protein 
LOC100133128          0.048   PREDICTED: hypothetical protein 
DEFB108B              0.048   beta-defensin 108B 
DEFB129               0.034   beta defensin 129 precursor 
DEFB119               0.028   defensin, beta 119 isoform a precursor 
DEFB117               0.021   PREDICTED: defensin, beta 117 
DEFB117               0.021   PREDICTED: defensin, beta 117 
DEFB117               0.021   PREDICTED: defensin, beta 117 
DEFB135               0.021   beta-defensin 135 
DEFB127               0.021   defensin, beta 127 preproprotein 
DEFB125               0.021   defensin, beta 125 preproprotein 
LOC100290235          0.014   PREDICTED: hypothetical protein XP_002347009 
DEFB107B              0.014   defensin, beta 107B precursor 
DEFB107A              0.014   defensin, beta 107A precursor 
LOC100293320          0.014   PREDICTED: hypothetical protein 
LOC100290025          0.014   PREDICTED: hypothetical protein XP_002347213 
LOC100287436          0.014   PREDICTED: hypothetical protein XP_002343077 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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