Guide to the Human Genome
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Name: CALM1 Sequence: fasta or formatted (149aa) NCBI GI: 5901912
Description:

calmodulin 1

Referenced in:

Calmodulin and Calcium
Glycogen

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         11           2
 C cysteine            0.0          0           0
 D aspartate          11.4         17           1
 E glutamate          14.1         21           3
 F phenylalanine       5.4          8           1
 G glycine             7.4         11           1
 H histidine           0.7          1           1
 I isoleucine          5.4          8           1
 K lysine              5.4          8           1
 L leucine             6.0          9           1
 M methionine          6.7         10           2
 N asparagine          4.0          6           1
 P proline             1.3          2           1
 Q glutamine           4.0          6           1
 R arginine            4.0          6           1
 S serine              2.7          4           1
 T threonine           8.1         12           2
 V valine              4.7          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calmodulin 1 
CALM3                 1.000   calmodulin 3 
CALM2                 1.000   calmodulin 2 
CALML3                0.878   calmodulin-like 3 
TNNC2                 0.502   fast skeletal muscle troponin C 
TNNC1                 0.480   troponin C, slow 
CETN1                 0.480   centrin 1 
CETN2                 0.469   caltractin 
CALML5                0.461   calmodulin-like 5 
CALML4                0.402   calmodulin-like 4 isoform 1 
CALML6                0.402   calmodulin-like 6 
MYL6                  0.391   myosin, light chain 6, alkali, smooth muscle and non...
MYL6                  0.384   myosin, light chain 6, alkali, smooth muscle and non...
MYL9                  0.373   myosin regulatory light chain 9 isoform a 
MYL12B                0.369   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.369   myosin regulatory light chain MRCL2 isoform B [Homo...
MYL12B                0.369   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.369   myosin regulatory light chain MRCL2 isoform A 
CABP5                 0.365   calcium binding protein 5 
MYL6B                 0.365   smooth muscle and non-muscle myosin alkali light chai...
CABP1                 0.362   calcium binding protein 1 isoform 3 
CABP1                 0.362   calcium binding protein 1 isoform 2 
CABP1                 0.362   calcium binding protein 1 isoform 1 
MYL12A                0.362   myosin, light chain 12A, regulatory, non-sarcomeric [...
MYL1                  0.347   fast skeletal myosin alkali light chain 1 isoform 3f...
CABP2                 0.343   calcium binding protein 2 isoform 2 
CABP2                 0.343   calcium binding protein 2 isoform 1 
CETN3                 0.343   centrin 3 
CABP4                 0.339   calcium binding protein 4 
MYL1                  0.339   fast skeletal myosin alkali light chain 1 isoform 1f...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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