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Search of human proteins with 239757360
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757360 PREDICTED: hypothetical protein [Homo sapiens]
(535 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757360 PREDICTED: hypothetical protein [Homo sapiens] 1100 0.0
gi|239751849 PREDICTED: hypothetical protein [Homo sapiens] 632 0.0
gi|239754683 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 38 0.027
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.059
gi|33286436 gametogenetin [Homo sapiens] 37 0.059
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 36 0.077
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 36 0.077
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 36 0.077
gi|171543895 ataxin 2 [Homo sapiens] 36 0.077
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 36 0.077
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 36 0.10
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 36 0.10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 35 0.13
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 35 0.13
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 35 0.13
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 35 0.17
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 35 0.17
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.17
gi|238859651 pleckstrin homology domain containing family A memb... 35 0.22
gi|7706469 Kruppel-like factor [Homo sapiens] 35 0.22
gi|13994280 C1q and tumor necrosis factor related protein 7 isof... 35 0.22
gi|206597454 C1q and tumor necrosis factor related protein 7 iso... 35 0.22
gi|206597452 C1q and tumor necrosis factor related protein 7 iso... 35 0.22
gi|24497460 Shaw-related voltage-gated potassium channel protein... 34 0.29
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 34 0.29
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 34 0.29
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 34 0.29
gi|30795231 brain abundant, membrane attached signal protein 1 [... 34 0.38
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 34 0.38
>gi|239757360 PREDICTED: hypothetical protein [Homo sapiens]
Length = 535
Score = 1100 bits (2845), Expect = 0.0
Identities = 535/535 (100%), Positives = 535/535 (100%)
Query: 1 MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG 60
MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG
Sbjct: 1 MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG 60
Query: 61 GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD 120
GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD
Sbjct: 61 GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD 120
Query: 121 QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQTPPGLPSALG 180
QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQTPPGLPSALG
Sbjct: 121 QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQTPPGLPSALG 180
Query: 181 KFSLYWKPCLGICLSPHSPLHGPSLAALTRIHLPEPLRHPRLLLTPPAALERNGSRFYDG 240
KFSLYWKPCLGICLSPHSPLHGPSLAALTRIHLPEPLRHPRLLLTPPAALERNGSRFYDG
Sbjct: 181 KFSLYWKPCLGICLSPHSPLHGPSLAALTRIHLPEPLRHPRLLLTPPAALERNGSRFYDG 240
Query: 241 DVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQATGQEVAGGEPPPAADVTA 300
DVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQATGQEVAGGEPPPAADVTA
Sbjct: 241 DVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQATGQEVAGGEPPPAADVTA 300
Query: 301 TPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKG 360
TPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKG
Sbjct: 301 TPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKG 360
Query: 361 ERLARVTATQHLMLGDLFLRSLPAFLLRGEPLRALPRRPRLHPQGRPTALAPPSLSICCR 420
ERLARVTATQHLMLGDLFLRSLPAFLLRGEPLRALPRRPRLHPQGRPTALAPPSLSICCR
Sbjct: 361 ERLARVTATQHLMLGDLFLRSLPAFLLRGEPLRALPRRPRLHPQGRPTALAPPSLSICCR 420
Query: 421 NERASAPYRQFLCWHPREDTKTCPLHPARVMVEGMLLGLSAARHKGEPCPLHPYLEHLCL 480
NERASAPYRQFLCWHPREDTKTCPLHPARVMVEGMLLGLSAARHKGEPCPLHPYLEHLCL
Sbjct: 421 NERASAPYRQFLCWHPREDTKTCPLHPARVMVEGMLLGLSAARHKGEPCPLHPYLEHLCL 480
Query: 481 KIGLSAWALRCAFGQSGGQEERSPREEEEEEGGKAKWRLRKGRCWQRVLRTHLEL 535
KIGLSAWALRCAFGQSGGQEERSPREEEEEEGGKAKWRLRKGRCWQRVLRTHLEL
Sbjct: 481 KIGLSAWALRCAFGQSGGQEERSPREEEEEEGGKAKWRLRKGRCWQRVLRTHLEL 535
>gi|239751849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 491
Score = 632 bits (1630), Expect = 0.0
Identities = 325/372 (87%), Positives = 326/372 (87%), Gaps = 42/372 (11%)
Query: 1 MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG 60
MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG
Sbjct: 1 MTKKNIFLLFPCFFFKVITEQVVVDANLPSVSKVSVGQVVVGQVELLQRLEVVEGVALDG 60
Query: 61 GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD 120
GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD
Sbjct: 61 GYLGVHEPQLAQAGETLEGARADQVQPVARQLQLLQAHQGRQVGDVLEVAHAQVEVAQVD 120
Query: 121 QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQTPPGLPSALG 180
QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQ
Sbjct: 121 QPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQ---------- 170
Query: 181 KFSLYWKPCLGICLSPHSPLHGPSLAALTRIHLPEPLRHPRLLLTPPAALERNGSRFYDG 240
LPEPLRHPRLLLTPPAALERNGSRFYDG
Sbjct: 171 --------------------------------LPEPLRHPRLLLTPPAALERNGSRFYDG 198
Query: 241 DVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQATGQEVAGGEPPPAADVTA 300
DVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQATGQEVAGGEPPPAADVTA
Sbjct: 199 DVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQATGQEVAGGEPPPAADVTA 258
Query: 301 TPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKG 360
TPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKG
Sbjct: 259 TPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKG 318
Query: 361 ERLARVTATQHL 372
ERL V A+Q L
Sbjct: 319 ERLGPVGASQQL 330
>gi|239754683 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 45.8 bits (107), Expect = 1e-04
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 211 IHLPEPLRHPRLLLTPPAALERNGSRFYDGDVATAWGCWF------RYRVLTGMLAGTSA 264
+ L PL+ P + SR++ +AW W RYRV G+ GTS
Sbjct: 37 LRLARPLKAPTSICRMEFLPNCRTSRWWRWRKVSAWIIWMLFSMRLRYRVFEGIPCGTSE 96
Query: 265 RSLRVQITRLAWLLQEQATGQ 285
R RV T L WLL EQ GQ
Sbjct: 97 RPRRVHTTLLNWLLHEQTEGQ 117
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 37.7 bits (86), Expect = 0.027
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 288 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 347
AGG P + P PA + G + +R P G+D +PG G G P A
Sbjct: 1018 AGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGD 1077
Query: 348 RGRWGAVG-GGEKGER 362
+G GA G G KG++
Sbjct: 1078 KGDVGAPGHKGSKGDK 1093
Score = 30.8 bits (68), Expect = 3.2
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 280 EQATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRAR 339
E+ +V G PP A+ P PP RG + G+ G G G P
Sbjct: 1284 EKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGRE-GEKGAKGEPGPDGPPGRT 1342
Query: 340 AILNVHAPRGRWGAVG 355
+ P GR G G
Sbjct: 1343 GPMGARGPPGRVGPEG 1358
Score = 30.0 bits (66), Expect = 5.5
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 304 PPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG-GEKG 360
PP P G E P G PG GG G+P + P G GA G GE+G
Sbjct: 963 PPGPLGKE-------GPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERG 1013
Score = 30.0 bits (66), Expect = 5.5
Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 17/92 (18%)
Query: 284 GQEVAGGEPPPAADV--------TATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGH 333
G A G P P D+ + PP +G GE + S P G LPG G
Sbjct: 1214 GPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTG---LPGDLGPP 1270
Query: 334 GEPRARAILNVHAPRGRWGAVGG----GEKGE 361
G+P I +G G VGG G GE
Sbjct: 1271 GDPGVSGIDGSPGEKGDPGDVGGPGPPGASGE 1302
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.6 bits (83), Expect = 0.059
Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILP---GGSGGHGEPRARA 340
G A GEP P PP PA G++ R P G P GG G G P A
Sbjct: 443 GDTGAKGEPGPVG--VQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADG 500
Query: 341 ILNVHAPRGRWGAVG-GGEKG 360
+ P G G+ G G KG
Sbjct: 501 VAGPKGPAGERGSPGPAGPKG 521
Score = 36.6 bits (83), Expect = 0.059
Identities = 35/94 (37%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 282 ATGQEVAGGEPPPA-ADVTATPP-------PPAPRG-----GEKSQRKSNAPWGQDILPG 328
A GQ A GEP A A A PP PP P G G K R S P G PG
Sbjct: 819 ADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPG 878
Query: 329 GSGGHGEPRARAILNVHAPRGRWGAVGG-GEKGE 361
+G G P P G G GG G +GE
Sbjct: 879 AAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE 912
Score = 31.2 bits (69), Expect = 2.5
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 282 ATGQEVAGGEP--PPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRAR 339
A G A GE P V P P PRG +N G D G +G G P ++
Sbjct: 669 APGPSGARGERGFPGERGVQGPPGPAGPRG-------ANGAPGNDGAKGDAGAPGAPGSQ 721
Query: 340 AILNVHAPRGRWGAVG-GGEKGER 362
+ G GA G G KG+R
Sbjct: 722 GAPGLQGMPGERGAAGLPGPKGDR 745
Score = 31.2 bits (69), Expect = 2.5
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 302 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG-GEKG 360
PP PA G+K + + P G G G GEP P G G G GE G
Sbjct: 771 PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG 830
Query: 361 ERLAR 365
+ A+
Sbjct: 831 DAGAK 835
Score = 30.8 bits (68), Expect = 3.2
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 289 GGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPR 348
G + P A P A G R + P G PG G GEP A +
Sbjct: 389 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAK 448
Query: 349 GRWGAVG-------GGEKGERLAR 365
G G VG GE+G+R AR
Sbjct: 449 GEPGPVGVQGPPGPAGEEGKRGAR 472
Score = 30.0 bits (66), Expect = 5.5
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 288 AGGEPPPAADVTATPP-PPAPRG--GEKSQRKSNAPWGQ------DILPGGSGGHGEPRA 338
AG PP A PP PP P G G K R P G+ PG +G G P A
Sbjct: 880 AGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA 939
Query: 339 RAILNVHAPRGRWGAVG-------GGEKGER 362
G G G G++GER
Sbjct: 940 DGPAGAPGTPGPQGIAGQRGVVGLPGQRGER 970
Score = 29.3 bits (64), Expect = 9.4
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 292 PPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRG 349
PP A P PP P G G+ P G PG +G G P + G
Sbjct: 555 PPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 614
Query: 350 RWGAVG-------GGEKGER 362
GA G GE+GE+
Sbjct: 615 EAGAQGPPGPAGPAGERGEQ 634
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 36.6 bits (83), Expect = 0.059
Identities = 42/145 (28%), Positives = 56/145 (38%), Gaps = 22/145 (15%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPR--GGEKSQRKSNAPWGQD---ILPGGSGGHGEPRA 338
G+ +G PA+ A PPPP G + +AP G + G GG G PR
Sbjct: 319 GEGCSGPPSAPASQARALPPPPYTTFPGSKPKFDWVSAPDGPERHFRFNGAGGGIGAPRR 378
Query: 339 RAILNVHAPRGRWGAVGGGEKGERLARVTATQH----LMLGDLFLRSLPAFLLRGEPLR- 393
RA A G WG+ E++ + L+ F+ P GEP+R
Sbjct: 379 RAA----ALSGPWGS--PPPPPEQIHSAPGPRRPAPALLAPPTFIFPAPT---NGEPMRP 429
Query: 394 ---ALPRRPRLHPQGRPTALAPPSL 415
L P L P P L PP+L
Sbjct: 430 GPPGLQELPPLPPPTPPPTLQPPAL 454
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 36.2 bits (82), Expect = 0.077
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 292 PPPAADVTATPPPPAPRG--------GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 343
PP A P P PRG G++ Q+ G LPG G +GE + I
Sbjct: 1111 PPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPG 1170
Query: 344 VHAPRGRWGAVG-GGEKG 360
PRG G VG G++G
Sbjct: 1171 PFGPRGPPGPVGPSGKEG 1188
Score = 32.3 bits (72), Expect = 1.1
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 305 PAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL---NVHAPRGRWGAVGG-GE 358
P P+G GE+ S+ P G PG G G P AR + V P G+ G +G GE
Sbjct: 536 PGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGE 595
Query: 359 KG 360
G
Sbjct: 596 DG 597
Score = 30.8 bits (68), Expect = 3.2
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 280 EQATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQ---RKSNAPWGQDILPGGSGGHGEP 336
E G + A G P P PP PA GEK + R P G PG G +G
Sbjct: 788 EGTAGNDGARGLPGPLG-----PPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPT 842
Query: 337 RARAILNVHAPRGRWGAVG-GGEKGER 362
A P G+ G G GE G++
Sbjct: 843 GAVGFAGPQGPDGQPGVKGEPGEPGQK 869
Score = 30.8 bits (68), Expect = 3.2
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAI 341
GQ+ G P P + +P P P G G K R + P G PG +G G P
Sbjct: 867 GQKGDAGSPGPQG-LAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGA 925
Query: 342 LNVHAPRGRWGAVG 355
P G G G
Sbjct: 926 PGPAGPLGEPGKEG 939
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 36.2 bits (82), Expect = 0.077
Identities = 46/150 (30%), Positives = 59/150 (39%), Gaps = 31/150 (20%)
Query: 260 AGTSARSLR-------VQITRLAWLLQEQATGQE--VAGGEPPPAADVTATPPPPAPRGG 310
AG++AR+LR Q R A + Q G E + G PP ++ PPP + R
Sbjct: 102 AGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLL 161
Query: 311 EKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRW-GAVGGGEKGERLARVTAT 369
+ R P G G G + A+L W GA GGGEKG R
Sbjct: 162 PPTPRPFPPA------PAGGKGEGGGKESAVL--------WKGAEGGGEKGNRNMAAAP- 206
Query: 370 QHLMLGDLFLRSLPA--FLLRGEPLRALPR 397
LGD + A L R PL +PR
Sbjct: 207 ----LGDPAREAAQAQTGLRRRRPLELVPR 232
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 36.2 bits (82), Expect = 0.077
Identities = 46/150 (30%), Positives = 59/150 (39%), Gaps = 31/150 (20%)
Query: 260 AGTSARSLR-------VQITRLAWLLQEQATGQE--VAGGEPPPAADVTATPPPPAPRGG 310
AG++AR+LR Q R A + Q G E + G PP ++ PPP + R
Sbjct: 102 AGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLL 161
Query: 311 EKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRW-GAVGGGEKGERLARVTAT 369
+ R P G G G + A+L W GA GGGEKG R
Sbjct: 162 PPTPRPFPPA------PAGGKGEGGGKESAVL--------WKGAEGGGEKGNRNMAAAP- 206
Query: 370 QHLMLGDLFLRSLPA--FLLRGEPLRALPR 397
LGD + A L R PL +PR
Sbjct: 207 ----LGDPAREAAQAQTGLRRRRPLELVPR 232
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 36.2 bits (82), Expect = 0.077
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 278 LQEQATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDIL--PGGSGGHGE 335
LQ A GG P +A PPPP P G R+S+ P D G GG
Sbjct: 31 LQRPARRSGRGGGGAAPGPYPSAAPPPPGP--GPPPSRQSSPPSASDCFGSNGNGGGAFR 88
Query: 336 PRARAILNVHAP 347
P +R +L + P
Sbjct: 89 PGSRRLLGLGGP 100
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 36.2 bits (82), Expect = 0.077
Identities = 31/94 (32%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 277 LLQEQATGQEVAGGEPPPAADVTATPPPPAPRG--------GEKSQRKSNAPWGQDILPG 328
L+ EQ G G P P D+ +P P RG G P GQ G
Sbjct: 556 LMMEQENGN--LRGSPGPKGDM-GSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVG 612
Query: 329 GSGGHGEPRARAILNVHAPRGRWGAVGGGEKGER 362
G G R PRG G G GEKGER
Sbjct: 613 DPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGER 646
Score = 29.3 bits (64), Expect = 9.4
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 304 PPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVG 355
PP P+G GEK R G LPG GEP A+ + P G G G
Sbjct: 705 PPGPKGDQGEKGPRGLTGEPGMRGLPGAV---GEPGAKGAMGPAGPDGHQGPRG 755
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 35.8 bits (81), Expect = 0.10
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 289 GGEPPPAADVTATPPPPAPRG--------GEKSQRKSNAPWGQDILPGGSGGHGEPRARA 340
GG P + P P P+G GEK + AP LPG G GE R
Sbjct: 1416 GGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPG----LPGQPGSPGEQGPRG 1471
Query: 341 ILNVHAPRGRWGAVG----GGEKGER 362
P+G G G GEKGER
Sbjct: 1472 PPGAIGPKGDRGFPGPLGEAGEKGER 1497
Score = 32.3 bits (72), Expect = 1.1
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 343
G +V+ EP P PP GE P G +PG G GEP
Sbjct: 2091 GPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEP------- 2143
Query: 344 VHAPRGRWGAVG-GGEKG 360
PRG+ G G GE+G
Sbjct: 2144 --GPRGQDGNPGLPGERG 2159
Score = 32.3 bits (72), Expect = 1.1
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAI 341
G + A GEP D P RG G K R P GQD PG G G
Sbjct: 2111 GLKGAKGEPGSNGD----QGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGK 2166
Query: 342 LNVHAPRGRWGAVGG-GEKG 360
+ PRG G VGG G+ G
Sbjct: 2167 PGLQGPRGPPGPVGGHGDPG 2186
Score = 31.2 bits (69), Expect = 2.5
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 283 TGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQD-----------ILPGGSG 331
TG++ GEP D P A GEK P G +LPG G
Sbjct: 1527 TGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPG 1586
Query: 332 GHGEPRARAILNVHAPRGRWGAVG-GGEKGE 361
G+P R + + G G G GEKG+
Sbjct: 1587 PKGDPGDRGPIGLTGRAGPPGDSGPPGEKGD 1617
Score = 31.2 bits (69), Expect = 2.5
Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 290 GEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 347
GEP P P P RG G + + P G PG GGHG+P + P
Sbjct: 2141 GEPGPRGQ-DGNPGLPGERGMAGPEGKPGLQGPRGP---PGPVGGHGDPGPPGAPGLAGP 2196
Query: 348 RGRWGAVG-GGEKGE 361
G G G GE GE
Sbjct: 2197 AGPQGPSGLKGEPGE 2211
Score = 31.2 bits (69), Expect = 2.5
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 279 QEQATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPW----------GQDILPG 328
++ A+G++ G P V +P P P G + + AP G+ PG
Sbjct: 2261 RDGASGKDGDRGSP----GVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPG 2316
Query: 329 GSGGH--GEPRARAILNVHAPRGRWGAVG-GGEKGE 361
G G GEP A+ + PRG G G GE G+
Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGD 2352
Score = 30.8 bits (68), Expect = 3.2
Identities = 69/266 (25%), Positives = 89/266 (33%), Gaps = 40/266 (15%)
Query: 114 VEVAQVDQPLEGRLRDVFQPLELAQVQAPQRGHAVEGVGGDALDGVVPQPELPQLGQTPP 173
V V VD+PL G D+F P+ AQ G+ L PE QL + P
Sbjct: 1160 VMVLLVDEPLRG---DIFSPIREAQAS---------GLNVVMLGMAGADPE--QLRRLAP 1205
Query: 174 GLPSALGKFSLYWKPCLGICLSPHSPLHGPSLAALTRIHLPEPLRHPRLLLTPPAALERN 233
G+ S F++ P L +S G + A +P P + P
Sbjct: 1206 GMDSVQTFFAVDDGPSLDQAVS------GLATALCQASFTTQPRPEPCPVYCPKGQKGEP 1259
Query: 234 GSRFYDGDVATAWGCWFRYRVLTGMLAGTSARSLRVQITRLAWLLQEQATGQEVAGGEP- 292
G G V R TG + + G G P
Sbjct: 1260 GEMGLRGQVGPPGDPGLPGR--TGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPG 1317
Query: 293 -PPAADVTATPPPPAPRG--GEKSQR----KSNAPWGQDI------LPGGSGG---HGEP 336
P A + +P P PRG GE+ R + AP GQ I LPG G G P
Sbjct: 1318 TPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAP-GQVIGGEGPGLPGRKGDPGPSGPP 1376
Query: 337 RARAILNVHAPRGRWGAVGGGEKGER 362
R L PRG G G KG++
Sbjct: 1377 GPRGPLGDPGPRGPPGLPGTAMKGDK 1402
Score = 30.4 bits (67), Expect = 4.2
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 284 GQEVAGGEPPPAADVTATPPP-----PAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEP 336
GQ + GE P A P P P G GEK +R P G LPG + G P
Sbjct: 1459 GQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVA---GRP 1515
Query: 337 RARAILNVHAPRGRWGAVGGGEKGE 361
A+ P GR GEKGE
Sbjct: 1516 GAKGPEGPPGPTGR-----QGEKGE 1535
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 35.8 bits (81), Expect = 0.10
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 21/139 (15%)
Query: 278 LQEQATGQEVAGGEPPPAADVTATP--PPPAPRGGEK-----------SQRKSNAPWG-- 322
++++AT E PP+ADV + P PPP GG K ++ + +PW
Sbjct: 33 MEQKATAPEAPS---PPSADVNSPPPLPPPTSPGGPKELEGQEPEPRPTEEEPGSPWSGP 89
Query: 323 QDILPGGSGGHGEPRARAILNVHAPRGRW-GAVGGGEKGERLARVTATQHLMLGD--LFL 379
++ P G RAR L G + G+V R A + L+L D +L
Sbjct: 90 DELEPVVQDGQRRIRARLSLATGLSWGPFHGSVQTRASSPRQAEPSPALTLLLVDEACWL 149
Query: 380 RSLPAFLLRGEPLRALPRR 398
R+LP L E + R+
Sbjct: 150 RTLPQALTEAEANTEIHRK 168
Score = 30.0 bits (66), Expect = 5.5
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 285 QEVAGGEPP-PAADVTATPPPPAP-----RGGEKSQRKSNAPWGQDILPGGS 330
QE G PP PAA A PPPPAP +G + + + AP LP G+
Sbjct: 926 QEPPPGPPPSPAAAPEAVPPPPAPPSYSDKGVQTPSKGTPAP-----LPNGN 972
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 35.4 bits (80), Expect = 0.13
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 288 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 347
AG E PP P PA + G + R P G+ LPG +G G P P
Sbjct: 1395 AGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP------GPMGP 1448
Query: 348 RGRWGAVGG-GEKGER 362
G G G G KGE+
Sbjct: 1449 PGLPGLKGDPGSKGEK 1464
Score = 34.7 bits (78), Expect = 0.22
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 343
G E A G P P + P P GEK + P G PG G G
Sbjct: 1195 GDEGARGFPGPPGPIGLQGLPGPP--GEKGENGDVGPMGP---PGPPGPRGPQGPNGADG 1249
Query: 344 VHAPRGRWGAVGG-GEKGE 361
P G G+VGG GEKGE
Sbjct: 1250 PQGPPGSVGSVGGVGEKGE 1268
Score = 33.5 bits (75), Expect = 0.50
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRK---------SNAPWGQDILPGGSGGHG 334
G E G P D P P+ + GEK + P G PG G +G
Sbjct: 823 GPEGPKGRAGPTGD-----PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 877
Query: 335 EPRARAILNVHAPRGRWGAVG-GGEKGER 362
E AR + PRG+ G G G +G R
Sbjct: 878 EKGARGVAGKPGPRGQRGPTGPRGSRGAR 906
Score = 30.8 bits (68), Expect = 3.2
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 288 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGE---------PRA 338
+GG+ PP P P G + P G+D LPG G GE P
Sbjct: 918 SGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGP 977
Query: 339 RAILNVHAPRGRWGAVG 355
++ P G G +G
Sbjct: 978 GGVVGPQGPTGETGPIG 994
Score = 30.8 bits (68), Expect = 3.2
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 284 GQEVAGGEP-PPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL 342
G++ G+P PP A PP P + G + G+ G +G G P +
Sbjct: 1348 GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV 1407
Query: 343 NVHAPRGRWGAVG----GGEKGERLARVTATQHLMLGDLFLRSLPAFLLRGEP 391
P G+ G G G GE+ A Q G + LP L+G+P
Sbjct: 1408 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPG--LKGDP 1458
Score = 30.4 bits (67), Expect = 4.2
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 302 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGE 361
P PP PRG + ++ P G G GG GE P G G GG KGE
Sbjct: 1233 PGPPGPRGPQ-GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV--GGPKGE 1289
Query: 362 R 362
R
Sbjct: 1290 R 1290
Score = 29.3 bits (64), Expect = 9.4
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 282 ATGQE-VAGGEPPPAADVTATP---PPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPR 337
A GQ +AG + PP P P P + G + P G PG G G+P
Sbjct: 674 APGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG 733
Query: 338 ARAILNVHAPRGRWGAVG-GGEKG 360
+ P G G G GEKG
Sbjct: 734 LAGLPGADGPPGHPGKEGQSGEKG 757
Score = 29.3 bits (64), Expect = 9.4
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 279 QEQATGQEVAGGEPPPAADVTATPPPPAPRG-----GEKSQRKSNAPWGQDILPGGSGGH 333
+E +G++ A G P P + P PRG G + + S G+D PG G
Sbjct: 749 KEGQSGEKGALGPPGPQGPIGY----PGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDM 804
Query: 334 GEPRARAILNVHAPRGRWGAVG 355
G R + PRG G G
Sbjct: 805 GLKGDRGEVGQIGPRGEDGPEG 826
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 35.4 bits (80), Expect = 0.13
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 288 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 347
AG E PP P PA + G + R P G+ LPG +G G P P
Sbjct: 1344 AGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP------GPMGP 1397
Query: 348 RGRWGAVGG-GEKGER 362
G G G G KGE+
Sbjct: 1398 PGLPGLKGDPGSKGEK 1413
Score = 34.7 bits (78), Expect = 0.22
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 343
G E A G P P + P P GEK + P G PG G G
Sbjct: 1144 GDEGARGFPGPPGPIGLQGLPGPP--GEKGENGDVGPMGP---PGPPGPRGPQGPNGADG 1198
Query: 344 VHAPRGRWGAVGG-GEKGE 361
P G G+VGG GEKGE
Sbjct: 1199 PQGPPGSVGSVGGVGEKGE 1217
Score = 33.5 bits (75), Expect = 0.50
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRK---------SNAPWGQDILPGGSGGHG 334
G E G P D P P+ + GEK + P G PG G +G
Sbjct: 772 GPEGPKGRAGPTGD-----PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 826
Query: 335 EPRARAILNVHAPRGRWGAVG-GGEKGER 362
E AR + PRG+ G G G +G R
Sbjct: 827 EKGARGVAGKPGPRGQRGPTGPRGSRGAR 855
Score = 30.8 bits (68), Expect = 3.2
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 288 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGE---------PRA 338
+GG+ PP P P G + P G+D LPG G GE P
Sbjct: 867 SGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGP 926
Query: 339 RAILNVHAPRGRWGAVG 355
++ P G G +G
Sbjct: 927 GGVVGPQGPTGETGPIG 943
Score = 30.8 bits (68), Expect = 3.2
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 284 GQEVAGGEP-PPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL 342
G++ G+P PP A PP P + G + G+ G +G G P +
Sbjct: 1297 GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV 1356
Query: 343 NVHAPRGRWGAVG----GGEKGERLARVTATQHLMLGDLFLRSLPAFLLRGEP 391
P G+ G G G GE+ A Q G + LP L+G+P
Sbjct: 1357 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPG--LKGDP 1407
Score = 30.4 bits (67), Expect = 4.2
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 302 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGE 361
P PP PRG + ++ P G G GG GE P G G GG KGE
Sbjct: 1182 PGPPGPRGPQ-GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV--GGPKGE 1238
Query: 362 R 362
R
Sbjct: 1239 R 1239
Score = 29.3 bits (64), Expect = 9.4
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 282 ATGQE-VAGGEPPPAADVTATP---PPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPR 337
A GQ +AG + PP P P P + G + P G PG G G+P
Sbjct: 623 APGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG 682
Query: 338 ARAILNVHAPRGRWGAVG-GGEKG 360
+ P G G G GEKG
Sbjct: 683 LAGLPGADGPPGHPGKEGQSGEKG 706
Score = 29.3 bits (64), Expect = 9.4
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 279 QEQATGQEVAGGEPPPAADVTATPPPPAPRG-----GEKSQRKSNAPWGQDILPGGSGGH 333
+E +G++ A G P P + P PRG G + + S G+D PG G
Sbjct: 698 KEGQSGEKGALGPPGPQGPIGY----PGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDM 753
Query: 334 GEPRARAILNVHAPRGRWGAVG 355
G R + PRG G G
Sbjct: 754 GLKGDRGEVGQIGPRGEDGPEG 775
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 35.4 bits (80), Expect = 0.13
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 288 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 347
AG E PP P PA + G + R P G+ LPG +G G P P
Sbjct: 1383 AGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP------GPMGP 1436
Query: 348 RGRWGAVGG-GEKGER 362
G G G G KGE+
Sbjct: 1437 PGLPGLKGDPGSKGEK 1452
Score = 34.7 bits (78), Expect = 0.22
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 343
G E A G P P + P P GEK + P G PG G G
Sbjct: 1183 GDEGARGFPGPPGPIGLQGLPGPP--GEKGENGDVGPMGP---PGPPGPRGPQGPNGADG 1237
Query: 344 VHAPRGRWGAVGG-GEKGE 361
P G G+VGG GEKGE
Sbjct: 1238 PQGPPGSVGSVGGVGEKGE 1256
Score = 33.5 bits (75), Expect = 0.50
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRK---------SNAPWGQDILPGGSGGHG 334
G E G P D P P+ + GEK + P G PG G +G
Sbjct: 811 GPEGPKGRAGPTGD-----PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 865
Query: 335 EPRARAILNVHAPRGRWGAVG-GGEKGER 362
E AR + PRG+ G G G +G R
Sbjct: 866 EKGARGVAGKPGPRGQRGPTGPRGSRGAR 894
Score = 30.8 bits (68), Expect = 3.2
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 288 AGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGE---------PRA 338
+GG+ PP P P G + P G+D LPG G GE P
Sbjct: 906 SGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGP 965
Query: 339 RAILNVHAPRGRWGAVG 355
++ P G G +G
Sbjct: 966 GGVVGPQGPTGETGPIG 982
Score = 30.8 bits (68), Expect = 3.2
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 284 GQEVAGGEP-PPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAIL 342
G++ G+P PP A PP P + G + G+ G +G G P +
Sbjct: 1336 GEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV 1395
Query: 343 NVHAPRGRWGAVG----GGEKGERLARVTATQHLMLGDLFLRSLPAFLLRGEP 391
P G+ G G G GE+ A Q G + LP L+G+P
Sbjct: 1396 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPG--LKGDP 1446
Score = 30.4 bits (67), Expect = 4.2
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 302 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGE 361
P PP PRG + ++ P G G GG GE P G G GG KGE
Sbjct: 1221 PGPPGPRGPQ-GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV--GGPKGE 1277
Query: 362 R 362
R
Sbjct: 1278 R 1278
Score = 29.3 bits (64), Expect = 9.4
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 282 ATGQE-VAGGEPPPAADVTATP---PPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPR 337
A GQ +AG + PP P P P + G + P G PG G G+P
Sbjct: 662 APGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG 721
Query: 338 ARAILNVHAPRGRWGAVG-GGEKG 360
+ P G G G GEKG
Sbjct: 722 LAGLPGADGPPGHPGKEGQSGEKG 745
Score = 29.3 bits (64), Expect = 9.4
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 279 QEQATGQEVAGGEPPPAADVTATPPPPAPRG-----GEKSQRKSNAPWGQDILPGGSGGH 333
+E +G++ A G P P + P PRG G + + S G+D PG G
Sbjct: 737 KEGQSGEKGALGPPGPQGPIGY----PGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDM 792
Query: 334 GEPRARAILNVHAPRGRWGAVG 355
G R + PRG G G
Sbjct: 793 GLKGDRGEVGQIGPRGEDGPEG 814
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.0 bits (79), Expect = 0.17
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 290 GEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 347
GEP D+ PP P+G GE+ R G+ PG G GEP P
Sbjct: 107 GEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP 166
Query: 348 RGRWGAVG-GGEKGERLA 364
G G G GG ++A
Sbjct: 167 PGPPGPPGLGGNFAAQMA 184
Score = 33.9 bits (76), Expect = 0.38
Identities = 38/117 (32%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 300 ATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVG-GGE 358
A PP PA GE+ ++ + P G LPG G GE V G G VG GE
Sbjct: 641 AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGE 700
Query: 359 KGERLARVTATQHLMLGDLFLRSLPAFLLRGEPLRALPRRPRLHPQGRPTALAPPSL 415
+G R + + G R LP G P P+ P G P A PP L
Sbjct: 701 RGFPGERGSPGAQGLQGP---RGLP-----GTPGTDGPKGAS-GPAGPPGAQGPPGL 748
Score = 32.0 bits (71), Expect = 1.5
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 292 PPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRG 349
P A P PP P+G G+ P G + PG +G G P A + + G
Sbjct: 577 PSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG 636
Query: 350 RWGAVG-------GGEKGER 362
GA G GE+GE+
Sbjct: 637 ETGAAGPPGPAGPAGERGEQ 656
Score = 32.0 bits (71), Expect = 1.5
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 279 QEQATGQEVAGGEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEP 336
++ GQ+ G P P + P P P G G K R + P G PG +G G P
Sbjct: 850 EQGEAGQKGDAGAPGPQGP-SGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 908
Query: 337 RARAILNVHAPRGRWGAVGGGEKGER 362
+ P G G G KG R
Sbjct: 909 GSNGNPGPPGPPGPSGK--DGPKGAR 932
Score = 31.6 bits (70), Expect = 1.9
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 282 ATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAI 341
A G+ G P PA A PP + G K ++ G PG G G P +
Sbjct: 820 APGERGETGPPGPAG--FAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP 877
Query: 342 LNVHAPRGRWGAVG 355
V P+G GA G
Sbjct: 878 TGVTGPKGARGAQG 891
Score = 31.2 bits (69), Expect = 2.5
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 288 AGGEPPPAADVTATPP-PPAP--RGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNV 344
AG PP ++ PP PP P + G K R + P G+ PG G G P +
Sbjct: 902 AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD 961
Query: 345 HAPRGRWGAVG----GGEKG 360
P G G G G++G
Sbjct: 962 DGPSGAEGPPGPQGLAGQRG 981
Score = 30.0 bits (66), Expect = 5.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 285 QEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEP 336
+++ G + PP A P G+K ++ + P G+D PG G G P
Sbjct: 113 KDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPP 164
Score = 29.3 bits (64), Expect = 9.4
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 302 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG-GEKG 360
PP PA GEK + P G G G GE P G G G GE+G
Sbjct: 793 PPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQG 852
Query: 361 E 361
E
Sbjct: 853 E 853
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 35.0 bits (79), Expect = 0.17
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 290 GEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAP 347
GEP D+ PP P+G GE+ R G+ PG G GEP P
Sbjct: 38 GEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP 97
Query: 348 RGRWGAVG-GGEKGERLA 364
G G G GG ++A
Sbjct: 98 PGPPGPPGLGGNFAAQMA 115
Score = 33.9 bits (76), Expect = 0.38
Identities = 38/117 (32%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 300 ATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVG-GGE 358
A PP PA GE+ ++ + P G LPG G GE V G G VG GE
Sbjct: 572 AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGE 631
Query: 359 KGERLARVTATQHLMLGDLFLRSLPAFLLRGEPLRALPRRPRLHPQGRPTALAPPSL 415
+G R + + G R LP G P P+ P G P A PP L
Sbjct: 632 RGFPGERGSPGAQGLQGP---RGLP-----GTPGTDGPKGAS-GPAGPPGAQGPPGL 679
Score = 32.0 bits (71), Expect = 1.5
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 292 PPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRG 349
P A P PP P+G G+ P G + PG +G G P A + + G
Sbjct: 508 PSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG 567
Query: 350 RWGAVG-------GGEKGER 362
GA G GE+GE+
Sbjct: 568 ETGAAGPPGPAGPAGERGEQ 587
Score = 32.0 bits (71), Expect = 1.5
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 279 QEQATGQEVAGGEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEP 336
++ GQ+ G P P + P P P G G K R + P G PG +G G P
Sbjct: 781 EQGEAGQKGDAGAPGPQGP-SGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 839
Query: 337 RARAILNVHAPRGRWGAVGGGEKGER 362
+ P G G G KG R
Sbjct: 840 GSNGNPGPPGPPGPSGK--DGPKGAR 863
Score = 31.6 bits (70), Expect = 1.9
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 282 ATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAI 341
A G+ G P PA A PP + G K ++ G PG G G P +
Sbjct: 751 APGERGETGPPGPAG--FAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP 808
Query: 342 LNVHAPRGRWGAVG 355
V P+G GA G
Sbjct: 809 TGVTGPKGARGAQG 822
Score = 31.2 bits (69), Expect = 2.5
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 288 AGGEPPPAADVTATPP-PPAP--RGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNV 344
AG PP ++ PP PP P + G K R + P G+ PG G G P +
Sbjct: 833 AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD 892
Query: 345 HAPRGRWGAVG----GGEKG 360
P G G G G++G
Sbjct: 893 DGPSGAEGPPGPQGLAGQRG 912
Score = 30.0 bits (66), Expect = 5.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 285 QEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEP 336
+++ G + PP A P G+K ++ + P G+D PG G G P
Sbjct: 44 KDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPP 95
Score = 29.3 bits (64), Expect = 9.4
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 302 PPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGG-GEKG 360
PP PA GEK + P G G G GE P G G G GE+G
Sbjct: 724 PPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQG 783
Query: 361 E 361
E
Sbjct: 784 E 784
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 35.0 bits (79), Expect = 0.17
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 279 QEQATGQEVAGGEPPPAADV-------TATPPPPAPRGGEKSQRKSNAPWGQDILPGGSG 331
++ A G A G P PA A P PA G +R P G + G +G
Sbjct: 671 RDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730
Query: 332 GHGEPRARAILNVHAPRGRWGAVG 355
G+P A+ P+G G VG
Sbjct: 731 AAGQPGAKGERGAKGPKGENGVVG 754
Score = 32.0 bits (71), Expect = 1.5
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 282 ATGQEVAGGEPPPAADVTATPPP--PAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPR 337
A G GE P+ + PP P P+G G G+ LPG +G GEP
Sbjct: 836 AVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPG 895
Query: 338 ARAILNVHAPRGRWGAVG 355
I RG GAVG
Sbjct: 896 PLGIAGPPGARGPPGAVG 913
Score = 31.6 bits (70), Expect = 1.9
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 282 ATGQEVAGGEPPPAADV----------TATPPPPAPRGGEKSQRKSNAPWGQDILPGGSG 331
ATG GEP PA +A P P GE+ +R N G PG G
Sbjct: 338 ATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPG 397
Query: 332 GHGEPRARAI------LNVHAPRGRWGAVG 355
G P +R + V P G GA G
Sbjct: 398 LRGSPGSRGLPGADGRAGVMGPPGSRGASG 427
Score = 31.2 bits (69), Expect = 2.5
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 288 AGGEPPPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVH 345
A G P P + PP P+G G K ++ P G LPG SG GE +H
Sbjct: 518 ARGAPGPDGN-NGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLH 576
Query: 346 APRGRWGAVG-GGEKGER 362
G +G G G +GER
Sbjct: 577 ---GEFGLPGPAGPRGER 591
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 34.7 bits (78), Expect = 0.22
Identities = 46/182 (25%), Positives = 65/182 (35%), Gaps = 31/182 (17%)
Query: 268 RVQITRLAWLLQEQATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILP 327
RV + W++++ G GG P P P +G E S+R+S
Sbjct: 477 RVSAQQQLWMVEDTLAG---LGGPQKPPPHTEPDSPSPVLQGEESSERES---------- 523
Query: 328 GGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGERLARVTATQHLMLGDLFLRSLPAFLL 387
P + + + +P WG GG+K A+ HL LG R A
Sbjct: 524 -------LPESLELSSPRSPETDWGRPPGGDKD------LASPHLGLGS--PRVSRASSP 568
Query: 388 RGEPLRALPRRPRLHPQGRPTALAPPSLSICCRNERASAPYRQFLCWHPREDTKTCPLHP 447
G L + P+ P RP A L RN+ P+ + PR T L P
Sbjct: 569 EGRHLPS-PQLGTKAPVARPRMSAQEQLERMRRNQECGRPFPR--PTSPRLLTLGRTLSP 625
Query: 448 AR 449
AR
Sbjct: 626 AR 627
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 34.7 bits (78), Expect = 0.22
Identities = 50/197 (25%), Positives = 62/197 (31%), Gaps = 52/197 (26%)
Query: 148 VEGVGGDALDGVVPQPELPQLGQTPPGLPSALGKFSLYWKPCLGICLSPHSPLHGPSLAA 207
++G+G +A P P P PG P P+S G ++
Sbjct: 53 LDGLGAEAAPEPPPPPPPPAFYYPEPGAP------------------PPYSAPAGGLVSE 94
Query: 208 LTRIHLPEPL---RHPRLLLTPPAALERNGSRFYDGDVATAWGCWFRYRVLTGMLAGTSA 264
L R L PL H R LL PP L + DG +GC G+ G
Sbjct: 95 LLRPELDAPLGPALHGRFLLAPPGRLVKAEPPEADG--GGGYGC------APGLTRGPRG 146
Query: 265 RSLRVQITRLAWLLQEQATGQEVA-----GGEPPPAADVTATPPPPAPRGGEKSQRKSNA 319
L +E A G + GG PPP D P R R S
Sbjct: 147 ------------LKREGAPGPAASCMRGPGGRPPPPPDTPPLSPDGPARLPAPGPRASFP 194
Query: 320 PWGQDILPGGSGGHGEP 336
P P G G G P
Sbjct: 195 P------PFGGPGFGAP 205
>gi|13994280 C1q and tumor necrosis factor related protein 7 isoform
b [Homo sapiens]
Length = 289
Score = 34.7 bits (78), Expect = 0.22
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 271 ITRLAWLLQEQATGQEVAGGEPPPA--ADVTATPPPPAPRGGEKSQRKSNAPWGQDILPG 328
+T A Q G ++ G P + P PP P G S P G+ LPG
Sbjct: 7 VTSFAICASGQPRGNQLKGENYSPRYICSIPGLPGPPGPPGANGSP----GPHGRIGLPG 62
Query: 329 GSGGHGEPRARAILNVHAPRGRWGAVG-GGEKGER 362
G G + RG+ G +G GEKG++
Sbjct: 63 RDGRDGRKGEKGEKGTAGLRGKTGPLGLAGEKGDQ 97
>gi|206597454 C1q and tumor necrosis factor related protein 7
isoform b [Homo sapiens]
Length = 289
Score = 34.7 bits (78), Expect = 0.22
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 271 ITRLAWLLQEQATGQEVAGGEPPPA--ADVTATPPPPAPRGGEKSQRKSNAPWGQDILPG 328
+T A Q G ++ G P + P PP P G S P G+ LPG
Sbjct: 7 VTSFAICASGQPRGNQLKGENYSPRYICSIPGLPGPPGPPGANGSP----GPHGRIGLPG 62
Query: 329 GSGGHGEPRARAILNVHAPRGRWGAVG-GGEKGER 362
G G + RG+ G +G GEKG++
Sbjct: 63 RDGRDGRKGEKGEKGTAGLRGKTGPLGLAGEKGDQ 97
>gi|206597452 C1q and tumor necrosis factor related protein 7
isoform a [Homo sapiens]
Length = 296
Score = 34.7 bits (78), Expect = 0.22
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 271 ITRLAWLLQEQATGQEVAGGEPPPA--ADVTATPPPPAPRGGEKSQRKSNAPWGQDILPG 328
+T A Q G ++ G P + P PP P G S P G+ LPG
Sbjct: 14 VTSFAICASGQPRGNQLKGENYSPRYICSIPGLPGPPGPPGANGSP----GPHGRIGLPG 69
Query: 329 GSGGHGEPRARAILNVHAPRGRWGAVG-GGEKGER 362
G G + RG+ G +G GEKG++
Sbjct: 70 RDGRDGRKGEKGEKGTAGLRGKTGPLGLAGEKGDQ 104
>gi|24497460 Shaw-related voltage-gated potassium channel protein 3
[Homo sapiens]
Length = 757
Score = 34.3 bits (77), Expect = 0.29
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 291 EPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNV-HAPRG 349
+P P +PPPP P ++ Q P P G G+ RA + A G
Sbjct: 20 QPAPPPQPPESPPPP-PLPPQQQQPAQPGPAASPAGPPAPRGPGDRRAEPCPGLPAAAMG 78
Query: 350 RWGAVGGGEKGERLARVTATQHLMLGDLFLRSLPAFLLRG 389
R G GGG+ G+ + V +H LR+LP L G
Sbjct: 79 RHGG-GGGDSGKIVINVGGVRHETYRST-LRTLPGTRLAG 116
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 34.3 bits (77), Expect = 0.29
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 282 ATGQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAI 341
A G+ G P+ D P P P G EK + G D PG GG GE R
Sbjct: 378 ADGEAGRPGSSGPSGD-EGQPGEPGPPG-EKGEAGDEGNPGPDGAPGERGGPGERGPRGT 435
Query: 342 LNVHAPRGRWGAVG-GGEKG 360
PRG G G G++G
Sbjct: 436 PGTRGPRGDPGEAGPQGDQG 455
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 34.3 bits (77), Expect = 0.29
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 343
G + G P P P PP PRG K + P G +PG G G+P + ++
Sbjct: 189 GDQGQAGPPGP-------PGPPGPRGPPGDTGK-DGPRG---MPGVPGEPGKPGEQGLMG 237
Query: 344 VHAPRGRWGAVG-------GGEKGE 361
P G+ G++G G+KGE
Sbjct: 238 PLGPPGQKGSIGAPGIPGMNGQKGE 262
Score = 31.6 bits (70), Expect = 1.9
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 302 PPPPAPRG--GEKSQRKSNAPWGQDIL--PGGSGGHGEPRARAILNVHAPRGRWGAVG-- 355
P P G GEK P G I+ PG G HG P + P+G G +G
Sbjct: 502 PGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPH 561
Query: 356 --GGEKGER 362
G KGER
Sbjct: 562 GPAGPKGER 570
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 34.3 bits (77), Expect = 0.29
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 284 GQEVAGGEPPPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILN 343
G + G P P P PP PRG K + P G +PG G G+P + ++
Sbjct: 189 GDQGQAGPPGP-------PGPPGPRGPPGDTGK-DGPRG---MPGVPGEPGKPGEQGLMG 237
Query: 344 VHAPRGRWGAVG-------GGEKGE 361
P G+ G++G G+KGE
Sbjct: 238 PLGPPGQKGSIGAPGIPGMNGQKGE 262
Score = 31.6 bits (70), Expect = 1.9
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 302 PPPPAPRG--GEKSQRKSNAPWGQDIL--PGGSGGHGEPRARAILNVHAPRGRWGAVG-- 355
P P G GEK P G I+ PG G HG P + P+G G +G
Sbjct: 502 PGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPH 561
Query: 356 --GGEKGER 362
G KGER
Sbjct: 562 GPAGPKGER 570
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 33.9 bits (76), Expect = 0.38
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 279 QEQATGQEVAGGEPPPAADVTATP-PPPAPRGGEKSQRKSNAP 320
QEQA AGGE P AA+ A P AP GE+ ++ P
Sbjct: 106 QEQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEP 148
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 33.9 bits (76), Expect = 0.38
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 281 QATGQEVAGGEPPPAADVTATPP----PPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEP 336
Q Q + G PP PP PP P GGEK ++ G+ PG G +G+P
Sbjct: 256 QKGDQGLPGDRGPPG------PPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQP 309
Query: 337 RARAILNVHAPRGRWGAVG-GGEKGER 362
I + G G G GEKG++
Sbjct: 310 ---GIPGLPGDPGYPGEPGRDGEKGQK 333
Score = 32.0 bits (71), Expect = 1.5
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 290 GEP-PPAADVTATPPPPAPRG--GEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHA 346
G+P PP DV P PP RG G P G LPG +G G P + + +
Sbjct: 846 GDPGPPGLDV---PGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMG 902
Query: 347 PRGRWGAVG 355
P G G +G
Sbjct: 903 PPGPPGPLG 911
Score = 31.2 bits (69), Expect = 2.5
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 293 PPAADVTATPPPPAPRGGEKSQRKSNAPWGQDILPGGSGGHGEPRARAILNVHAPRG 349
PP A V P PP GE+ Q+ P G I PG G G+P A + P G
Sbjct: 387 PPGAAVMGPPGPPG-FPGERGQKGDEGPPGISI-PGPPGLDGQPGAPGLPGPPGPAG 441
Score = 30.8 bits (68), Expect = 3.2
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 292 PPPAADVTATPPPPAPRG-----GEKSQRKSNAPWGQDILPGGSGGHGEPRARA----IL 342
PP + P PP G GEK Q + P G +PG G G P ++ IL
Sbjct: 492 PPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDIL 551
Query: 343 NVHAPRGRWGAVG 355
+G G +G
Sbjct: 552 TFPGMKGDKGELG 564
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,307,770
Number of Sequences: 37866
Number of extensions: 1483258
Number of successful extensions: 11198
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 9764
Number of HSP's gapped (non-prelim): 1637
length of query: 535
length of database: 18,247,518
effective HSP length: 107
effective length of query: 428
effective length of database: 14,195,856
effective search space: 6075826368
effective search space used: 6075826368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.