Guide to the Human Genome
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Name: LOC100291533 Sequence: fasta or formatted (400aa) NCBI GI: 239749538
Description:

PREDICTED: hypothetical protein XP_002347080

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         55           3
 C cysteine            1.0          4           1
 D aspartate           1.2          5           1
 E glutamate           6.2         25           2
 F phenylalanine       2.2          9           1
 G glycine            16.2         65           4
 H histidine           1.8          7           2
 I isoleucine          1.0          4           1
 K lysine              2.0          8           1
 L leucine             7.2         29           2
 M methionine          0.5          2           1
 N asparagine          1.5          6           1
 P proline            11.5         46           3
 Q glutamine           2.8         11           1
 R arginine           13.8         55           4
 S serine              8.8         35           2
 T threonine           3.0         12           1
 V valine              3.8         15           1
 W tryptophan          1.8          7           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          1.000   PREDICTED: hypothetical protein XP_002342946 
LOC100294035          0.361   PREDICTED: hypothetical protein 
COL1A1                0.047   alpha 1 type I collagen preproprotein 
SRRM2                 0.039   splicing coactivator subunit SRm300 
COL3A1                0.038   collagen type III alpha 1 preproprotein 
LOC100292370          0.036   PREDICTED: hypothetical protein 
LOC645321             0.035   PREDICTED: hypothetical protein 
LOC645321             0.035   PREDICTED: hypothetical protein 
TAF4                  0.034   TBP-associated factor 4 
FLJ31945              0.034   PREDICTED: hypothetical protein 
LOC100288606          0.033   PREDICTED: hypothetical protein XP_002342652 
LOC100290372          0.031   PREDICTED: hypothetical protein XP_002346788 
TRNP1                 0.031   TMF regulated nuclear protein 
FLJ31945              0.031   PREDICTED: hypothetical protein 
FLJ31945              0.031   PREDICTED: hypothetical protein 
COL2A1                0.031   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.031   collagen, type II, alpha 1 isoform 2 precursor [Hom...
ZNF469                0.030   zinc finger protein 469 
LOC645602             0.030   PREDICTED: hypothetical protein 
LOC645602             0.030   PREDICTED: hypothetical protein 
LOC645602             0.030   PREDICTED: hypothetical protein 
UNCX                  0.030   UNC homeobox 
COL5A2                0.029   alpha 2 type V collagen preproprotein 
LOC100289721          0.029   PREDICTED: hypothetical protein XP_002347280 
LOC100289284          0.029   PREDICTED: hypothetical protein XP_002342335 
LOC646509             0.028   PREDICTED: hypothetical protein 
ZNF318                0.028   zinc finger protein 318 
SHANK1                0.028   SH3 and multiple ankyrin repeat domains 1 
RPH3A                 0.028   rabphilin 3A homolog isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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