Guide to the Human Genome
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Name: GGN Sequence: fasta or formatted (652aa) NCBI GI: 33286436
Description:

gametogenetin

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         88           3
 C cysteine            0.9          6           1
 D aspartate           2.3         15           1
 E glutamate           4.3         28           2
 F phenylalanine       1.7         11           1
 G glycine            10.6         69           7
 H histidine           2.0         13           2
 I isoleucine          1.4          9           1
 K lysine              2.9         19           1
 L leucine             8.1         53           2
 M methionine          1.1          7           1
 N asparagine          1.5         10           1
 P proline            19.6        128           5
 Q glutamine           3.8         25           1
 R arginine            7.2         47           3
 S serine              8.6         56           3
 T threonine           5.5         36           2
 V valine              3.1         20           1
 W tryptophan          1.2          8           1
 Y tyrosine            0.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gametogenetin 
FLJ22184              0.067   PREDICTED: hypothetical protein FLJ22184 
FMN2                  0.067   formin 2 
NACA                  0.065   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.058   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.056   PREDICTED: hypothetical protein FLJ22184 
CASKIN1               0.055   CASK interacting protein 1 
MLL2                  0.055   myeloid/lymphoid or mixed-lineage leukemia 2 
PRB2                  0.051   proline-rich protein BstNI subfamily 2 
SRCAP                 0.047   Snf2-related CBP activator protein 
RAPH1                 0.047   Ras association and pleckstrin homology domains 1 is...
COL3A1                0.045   collagen type III alpha 1 preproprotein 
COL2A1                0.044   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.044   collagen, type II, alpha 1 isoform 2 precursor [Hom...
TAF4                  0.044   TBP-associated factor 4 
PRR12                 0.044   proline rich 12 
COL1A1                0.044   alpha 1 type I collagen preproprotein 
WIPF3                 0.043   WAS/WASL interacting protein family, member 3 [Homo...
CIC                   0.043   capicua homolog 
CPSF6                 0.043   cleavage and polyadenylation specific factor 6, 68 ...
PTPN23                0.042   protein tyrosine phosphatase, non-receptor type 23 [...
GLTSCR1               0.042   glioma tumor suppressor candidate region gene 1 [Ho...
WIPF2                 0.042   WIRE protein 
ATN1                  0.041   atrophin-1 
ATN1                  0.041   atrophin-1 
COL5A1                0.041   alpha 1 type V collagen preproprotein 
COL4A5                0.040   type IV collagen alpha 5 isoform 2 precursor 
WIPF1                 0.040   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.040   WAS/WASL interacting protein family, member 1 
MLL4                  0.040   myeloid/lymphoid or mixed-lineage leukemia 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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