Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239753839
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 535 e-152
gi|239748402 PREDICTED: hypothetical protein [Homo sapiens] 147 9e-36
gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo ... 147 9e-36
gi|110832843 TBP-associated factor 4 [Homo sapiens] 64 1e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 61 8e-10
gi|134142824 forkhead box D2 [Homo sapiens] 58 7e-09
gi|163965366 nascent polypeptide-associated complex alpha subuni... 58 7e-09
gi|117938759 GNAS complex locus XLas [Homo sapiens] 57 2e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 57 2e-08
gi|122937321 UNC homeobox [Homo sapiens] 57 2e-08
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 56 3e-08
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 56 4e-08
gi|18641360 collectin sub-family member 12 [Homo sapiens] 55 6e-08
gi|48762934 alpha 2 type I collagen [Homo sapiens] 55 8e-08
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 54 1e-07
gi|19924097 synapsin I isoform Ib [Homo sapiens] 53 2e-07
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 53 3e-07
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 53 3e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 52 4e-07
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 52 4e-07
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 52 4e-07
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 52 4e-07
gi|4758392 forkhead box D1 [Homo sapiens] 52 4e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 52 5e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 52 5e-07
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 52 5e-07
gi|55750053 atrophin-1 [Homo sapiens] 52 5e-07
gi|55750041 atrophin-1 [Homo sapiens] 52 5e-07
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 52 5e-07
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 52 5e-07
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 535 bits (1377), Expect = e-152
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MAYSRQRKIRPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPA 60
MAYSRQRKIRPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPA
Sbjct: 1 MAYSRQRKIRPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPA 60
Query: 61 ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP 120
ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP
Sbjct: 61 ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP 120
Query: 121 APGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPR 180
APGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPR
Sbjct: 121 APGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPR 180
Query: 181 SPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240
SPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV
Sbjct: 181 SPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240
Query: 241 AAPDPGCTPGTENAPAS 257
AAPDPGCTPGTENAPAS
Sbjct: 241 AAPDPGCTPGTENAPAS 257
>gi|239748402 PREDICTED: hypothetical protein [Homo sapiens]
Length = 67
Score = 147 bits (371), Expect = 9e-36
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 191 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250
MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG
Sbjct: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
Query: 251 TENAPAS 257
TENAPAS
Sbjct: 61 TENAPAS 67
Score = 28.9 bits (63), Expect = 4.6
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 69 PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGT 124
P G P +P A PPA A+ A AG P A RG AA PGT
Sbjct: 7 PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGT 61
>gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo
sapiens]
Length = 67
Score = 147 bits (371), Expect = 9e-36
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 191 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250
MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG
Sbjct: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
Query: 251 TENAPAS 257
TENAPAS
Sbjct: 61 TENAPAS 67
Score = 28.9 bits (63), Expect = 4.6
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 69 PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGT 124
P G P +P A PPA A+ A AG P A RG AA PGT
Sbjct: 7 PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGT 61
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 64.3 bits (155), Expect = 1e-10
Identities = 80/229 (34%), Positives = 92/229 (40%), Gaps = 36/229 (15%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GPA G P AP + PG GGP GPP + R AGPA P
Sbjct: 74 GPAAPAEG--APGAAPEPPPAGRARPGGGGP-------QRPGPP--SPRRPLVPAGPAPP 122
Query: 104 PC--RAPGRGRAAATRRSPAPGTARG----SPAG-VERAGGATAASSAGTRSVPARRL-P 155
R P G A + PA +PAG + AG A A+ AG P P
Sbjct: 123 AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGP 182
Query: 156 PPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAM--PGPGA----PRPGAPGT---WP 206
P G G G+ A GSAAL S ++ ++ GP A P+P APGT P
Sbjct: 183 GPGPGKPAGPGA-AQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTP 241
Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255
AAPPA AA P PA A APAA A P P P T P
Sbjct: 242 PFVGAAAPPAPAAPSPPAAPAPA-APAA------APPPPPPAPATLARP 283
Score = 61.6 bits (148), Expect = 6e-10
Identities = 73/242 (30%), Positives = 89/242 (36%), Gaps = 54/242 (22%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP RR P AP A+ G+ G C P PA A+ AAG PAGP
Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGS-CAPV-------PAAAAVAAGPEPAPAGP 157
Query: 104 PCRAPGRGRAAATRRS---------PAPGTARGSPAG---VERAGGATAASSAGTRSVPA 151
A G AA R+ P PG G PAG + G+ A ++ + PA
Sbjct: 158 ---AKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPA 214
Query: 152 RRL------------PPPCGGTSLG----AGSRALRRPGSAALPRSPSSSRRWAAMPGPG 195
L P GT + G+ A P + + P +P+ + AA P P
Sbjct: 215 VSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274
Query: 196 ------APRPGAPGTWPVGFAVAAPPAAA-----ASVAPPPPAVAGAPAAAFRGWVAAPD 244
A PG P P PPAAA A AP P AG PA G P
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA----GVSGQPG 330
Query: 245 PG 246
PG
Sbjct: 331 PG 332
Score = 59.7 bits (143), Expect = 2e-09
Identities = 60/207 (28%), Positives = 78/207 (37%), Gaps = 28/207 (13%)
Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
+PP V AA P A P PA +A P A A P G P P
Sbjct: 240 TPPFVGAAAPPA----PAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAP 295
Query: 113 A----------AATRRSPAPGTARGSPAGVE---RAGGATAASSAGTRSVPARRL---PP 156
A + +PAP A G PAGV G A AA + G ++ +R+ P
Sbjct: 296 AVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAP 355
Query: 157 PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPA 216
P T +G + +A++ P+ A+P P A P APGT P G A A
Sbjct: 356 PAAQTLAASGPAST----AASMVIGPTMQ---GALPSPAAVPPPAPGT-PTGLPKGAAGA 407
Query: 217 AAASVAPPPPAVAGAPAAAFRGWVAAP 243
S++ P A A V AP
Sbjct: 408 VTQSLSRTPTATTSGIRATLTPTVLAP 434
Score = 49.3 bits (116), Expect = 3e-06
Identities = 55/173 (31%), Positives = 59/173 (34%), Gaps = 18/173 (10%)
Query: 90 ASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSV 149
AS A P P RA G GSPAG AG A A A
Sbjct: 35 ASAAHHHHLAPRTPEVRAAAAGALGNH-------VVSGSPAGAAGAGPAAPAEGAPG--- 84
Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTW---P 206
A PPP G G G P S P P+ AA P P G+ G+ P
Sbjct: 85 -AAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRP--PPEGSAGSCAPVP 141
Query: 207 VGFAVAA--PPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
AVAA PA A P PA A A G P PG PG P +
Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGA 194
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 61.2 bits (147), Expect = 8e-10
Identities = 68/218 (31%), Positives = 83/218 (38%), Gaps = 17/218 (7%)
Query: 44 GPAGARRGHSPP----TVAPAASAGSQEHPGAGGPLCFPA-RSAAWGPPARASRAAGRRA 98
GPAG R + P A + G+ GA G P R AA P + R
Sbjct: 692 GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPK 751
Query: 99 GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPP-P 157
G G P + RG T PG A G+P +G + A G R P R P P
Sbjct: 752 GADGSPGKDGVRG---LTGPIGPPGPA-GAPGDKGESGPSGPAGPTGARGAPGDRGEPGP 807
Query: 158 CGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAA 217
G A +PG+ P + ++ A PGP P G PG P+G V AP A
Sbjct: 808 PGPAGFAGPPGADGQPGAKGEP-GDAGAKGDAGPPGPAGPA-GPPG--PIG-NVGAPGAK 862
Query: 218 AASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255
A + PP G P AA G V P P G P
Sbjct: 863 GARGSAGPPGATGFPGAA--GRVGPPGPSGNAGPPGPP 898
Score = 55.8 bits (133), Expect = 4e-08
Identities = 70/218 (32%), Positives = 78/218 (35%), Gaps = 47/218 (21%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRA---------- 93
G GAR PP G+ PGA G + P S GPP A
Sbjct: 860 GAKGARGSAGPP--------GATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG 911
Query: 94 ----AGR--RAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATA-ASSAGT 146
AGR GP GPP A +G A + APGT P G+ G G
Sbjct: 912 ETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTP--GPQGIAGQRGVVGLPGQRGE 969
Query: 147 RSVPARRLPPPCG-----GTSLGAGSRALRRP-GSAALPRSPSSSRRWAAMPGPGAP-RP 199
R P LP P G G S +G R P G L P S R A G+P R
Sbjct: 970 RGFPG--LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRD 1027
Query: 200 GAPG-------TWPVGFAVAAPPAAAASVAPPPPAVAG 230
G+PG T P G P A A AP P AG
Sbjct: 1028 GSPGAKGDRGETGPAG----PPGAPGAPGAPGPVGPAG 1061
Score = 54.7 bits (130), Expect = 8e-08
Identities = 69/234 (29%), Positives = 80/234 (34%), Gaps = 49/234 (20%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAA-WGPPARASRAAGRRAGPAG 102
GP G + PP PA G + G GP P GP +R A AGP G
Sbjct: 452 GPVGVQ---GPP--GPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKG 506
Query: 103 PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTS 162
P A R SP P +GSP R G A + G P P P G T
Sbjct: 507 P----------AGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGS--PGPDGKTG 554
Query: 163 LGAGSRALRRPGSAALPRSPSSSRRWAAM---PGP----GAP----RPGAPGTWPVGFAV 211
+ RPG P P +R A + PGP G P G PG P
Sbjct: 555 PPGPAGQDGRPG----PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP-PGAVGP 609
Query: 212 AAPPAAAASVAPPPPA----------VAGAPAAAFRGWVAAPDPGCTPGTENAP 255
A A + PP PA AG+P G+ P P PG P
Sbjct: 610 AGKDGEAGAQGPPGPAGPAGERGEQGPAGSP-----GFQGLPGPAGPPGEAGKP 658
Score = 48.9 bits (115), Expect = 4e-06
Identities = 68/228 (29%), Positives = 79/228 (34%), Gaps = 33/228 (14%)
Query: 54 PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRA 113
P + P+ G PGA GP F G P AS G R GP GPP + G A
Sbjct: 178 PGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPG-ASGPMGPR-GPPGPPGKNGDDGEA 235
Query: 114 A-----ATRRSPAPGTARGSP--------------AGVERA-GGATAASSAGTRSVPARR 153
R P P ARG P +G++ A G A A G P
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN 295
Query: 154 LPPPCGGTSLGAGSRALRRPGS--AALPRSPSSSRRWAAMPGPGAPR--PGAPGTWPVGF 209
P G G R RPG+ A R + A PGP P PG PG VG
Sbjct: 296 GAPGQMGPRGLPGERG--RPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGA--VGA 351
Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
A P + P V G P G A P PG + P +
Sbjct: 352 KGEAGPQGPRG-SEGPQGVRGEPGPP--GPAGAAGPAGNPGADGQPGA 396
Score = 48.1 bits (113), Expect = 7e-06
Identities = 79/290 (27%), Positives = 86/290 (29%), Gaps = 93/290 (32%)
Query: 44 GPAGARRGHSPP-TVAPAAS---AGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAG 99
G AG R PP V PA AG+Q PG GP G P G
Sbjct: 593 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP-----G 647
Query: 100 PAGPPCRA--PGRGRAAATRRSPAPGTARG--------------SPAGVERAGGATAASS 143
PAGPP A PG +P P ARG PAG A GA
Sbjct: 648 PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDG 707
Query: 144 A----------------GTRSVPARR----LPPPCG-----------GTSLGAGSRALRR 172
A G + +P R LP P G G+ G R L
Sbjct: 708 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTG 767
Query: 173 PGSAALPRSPSSSRRWAAMPGPGAP-----------RPGAPGTWPVGFA----------- 210
P P + + GP P PG PG P GFA
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG--PAGFAGPPGADGQPGA 825
Query: 211 -----------VAAPPAAAASVAPPPP-AVAGAPAAAFRGWVAAPDPGCT 248
A PP A PP P GAP A A P PG T
Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGP-PGAT 874
Score = 47.8 bits (112), Expect = 1e-05
Identities = 66/238 (27%), Positives = 77/238 (32%), Gaps = 43/238 (18%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR-----------ASR 92
G GA+ P P S G Q G GP P + A GP A+
Sbjct: 347 GAVGAKGEAGPQ--GPRGSEGPQGVRGEPGP---PGPAGAAGPAGNPGADGQPGAKGANG 401
Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSP--------APGT-----ARGSPAGVERAGGAT 139
A G P P R P + P APG+ A+G P V G
Sbjct: 402 APGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG 461
Query: 140 AASSAGTRSVPARRLPPPCG-----GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP 194
A G R AR P P G G G GSR A P+ P+ R PGP
Sbjct: 462 PAGEEGKRG--ARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER---GSPGP 516
Query: 195 GAPR--PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250
P+ PG G A + +P P G P A G P P PG
Sbjct: 517 AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPA--GQDGRPGPPGPPG 572
Score = 45.1 bits (105), Expect = 6e-05
Identities = 66/226 (29%), Positives = 72/226 (31%), Gaps = 31/226 (13%)
Query: 44 GPAGARRGHSPPTV-APAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAA--GRR--- 97
GP G R PP AG PG GP P A G P A G R
Sbjct: 215 GPMGPRGPPGPPGKNGDDGEAGKPGRPGERGP---PGPQGARGLPGTAGLPGMKGHRGFS 271
Query: 98 --------AGPAGPPCR--APGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTR 147
AGPAGP +PG A RG P AG + G
Sbjct: 272 GLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAA 331
Query: 148 SVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAPRP-GAPGTW 205
P P G G++ P P R PGP GA P G PG
Sbjct: 332 GPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPG-- 389
Query: 206 PVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPG 250
A P A A+ A P +AGAP RG PG PG
Sbjct: 390 ----ADGQPGAKGANGA---PGIAGAPGFPGARGPSGPQGPGGPPG 428
Score = 43.1 bits (100), Expect = 2e-04
Identities = 57/194 (29%), Positives = 68/194 (35%), Gaps = 30/194 (15%)
Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGR----RAGPAGPPCRAP 108
SP + G + G GP P A GP A ++ R AGPAGP
Sbjct: 1023 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVG 1082
Query: 109 GRGRAAAT-RRSPAPGTARGSPAGVE-RAGGATAASSAGTRSVPARRLPPPCGGTSLGAG 166
RG A R T G++ G + G P + P G S AG
Sbjct: 1083 ARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP---SGASGPAG 1139
Query: 167 SRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG----TWPVGFAVAAPPAAAASVA 222
R PGSA P + +PGP P PG G PVG PP
Sbjct: 1140 PRG--PPGSAGAPGKDGLN----GLPGPIGP-PGPRGRTGDAGPVG-----PPG-----P 1182
Query: 223 PPPPAVAGAPAAAF 236
P PP G P+A F
Sbjct: 1183 PGPPGPPGPPSAGF 1196
Score = 38.5 bits (88), Expect = 0.006
Identities = 51/174 (29%), Positives = 56/174 (32%), Gaps = 28/174 (16%)
Query: 44 GPAGARRGHSPP-TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
GP GA P V PA +G + G GP A GP AGP G
Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGP-----------AGPQG 1091
Query: 103 PPCRAPGRGRAAATRRSPAPGTA--RG-----SPAGVERAGGATAASSAGTRSVPARRLP 155
P RG T G RG P G + G S A + P R P
Sbjct: 1092 P------RGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGP--RGP 1143
Query: 156 PPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGF 209
P G G L P PR + PGP P PG PG GF
Sbjct: 1144 PGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP-PGPPGPPSAGF 1196
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 58.2 bits (139), Expect = 7e-09
Identities = 66/214 (30%), Positives = 81/214 (37%), Gaps = 36/214 (16%)
Query: 54 PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPA-GPPCRAPGRGR 112
P AP HP P F +AA P + S GR A P GPP + G
Sbjct: 275 PAYGAPPPGPAPHPHPH---PHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGA 331
Query: 113 AAATRRSPAPGTARG-SPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALR 171
+A +PA G+ G PAG+ GA + ++ A L PP GT+ G + LR
Sbjct: 332 GSAPAPAPASGSGPGPGPAGLPAFLGAELGCA---KAFYAASLSPPAAGTAAGLPTALLR 388
Query: 172 R-----------PGSAALPRSPSSS--------RRWAAMPGPGAPRPGAPGTWPVGFAVA 212
+ G A + PS S AA PG G PG P FA A
Sbjct: 389 QGLKTDAGGGAGGGGAGAGQRPSFSIDHIMGHGGGGAAPPGAGEGSPGPP------FAAA 442
Query: 213 APPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPG 246
A P A V A A AP A G + PG
Sbjct: 443 AGPGGQAQVLAMLTAPALAPVA---GHIRLSHPG 473
Score = 36.2 bits (82), Expect = 0.029
Identities = 31/78 (39%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 190 AMPGPGAPRPGA---PGTWPVGFAVAAPPAAAA---SVAP-----PPPAVAGAPAAAFRG 238
A+P GAP PG P P FA AA AAA SV P PPP A A G
Sbjct: 273 ALPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGAG 332
Query: 239 WVAAPDPGCTPGTENAPA 256
AP P G PA
Sbjct: 333 SAPAPAPASGSGPGPGPA 350
Score = 33.5 bits (75), Expect = 0.19
Identities = 30/90 (33%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 44 GPAGAR----RGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAG 99
GP R GH PP A E G C P A ASR A AG
Sbjct: 44 GPRAPRDVLPHGHEPPAEEAEADLAEDEEESGG---CSDGE-----PRALASRGAAAAAG 95
Query: 100 PAGPPCRAPGRGRAAATRRSPAPGTARGSP 129
GP A RG A P+ G A SP
Sbjct: 96 SPGPGA-AAARGAAGPGPGPPSGGAATRSP 124
Score = 32.3 bits (72), Expect = 0.42
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 148 SVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPG---APRPGAPGT 204
++PA PPP G P + A + +++ ++P PG AP PG P
Sbjct: 273 ALPAYGAPPP------GPAPHPHPHPHAFAFAAAAAAAPCQLSVP-PGRAAAPPPGPPTA 325
Query: 205 WPVGFAVAAPPAAAASVAPPPPAVAGAPA 233
A +AP A AS + P P AG PA
Sbjct: 326 SVFAGAGSAPAPAPASGSGPGPGPAGLPA 354
Score = 31.6 bits (70), Expect = 0.71
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 159 GGTSLGAGSRALRRPGSAALPRSP---SSSRRWAAMPGPGAPRPGAPGTWPV 207
GG S G RAL G+AA SP +++ R AA PGPG P GA P+
Sbjct: 75 GGCSDGE-PRALASRGAAAAAGSPGPGAAAARGAAGPGPGPPSGGAATRSPL 125
Score = 30.0 bits (66), Expect = 2.1
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 87 PARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146
PAR+ A R P G A A + G + G P + G A AA S G
Sbjct: 40 PARSGPRAPRDVLPHGHEPPAEEAEADLAEDEEESGGCSDGEPRALASRGAAAAAGSPGP 99
Query: 147 RSVPARRLPPPCGGTSLGAGSRALRRP 173
+ AR P G +G A R P
Sbjct: 100 GAAAARGAAGP--GPGPPSGGAATRSP 124
Score = 29.6 bits (65), Expect = 2.7
Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 189 AAMPGPGAPRPG--APGTWPVGFAVAA------PPAAAASVAPPPPAVAGAPAAAFR--- 237
AA PGA PG A G + G+ +A PP A P P A A A AAA
Sbjct: 248 AAAGDPGAFLPGFAAYGAYGYGYGLALPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQ 307
Query: 238 -----GWVAAPDPG 246
G AAP PG
Sbjct: 308 LSVPPGRAAAPPPG 321
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 58.2 bits (139), Expect = 7e-09
Identities = 69/220 (31%), Positives = 76/220 (34%), Gaps = 36/220 (16%)
Query: 54 PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRA 113
P AP A + P GG P + A P A G A P PP AP
Sbjct: 1121 PHKGAPTTPAATPPSP-KGGLATPPPKGAPTTPAATPPSPKGGLATP--PPKGAPTT--P 1175
Query: 114 AATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCGGTSLG 164
AAT SP G A SP G GG S G + PA P P GG +
Sbjct: 1176 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATP 1235
Query: 165 AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGA-------------PGTWPVGFAV 211
+ A P AA P SP A P GAP P A P AV
Sbjct: 1236 SPKGAPTTP--AATPPSPKGGP--ATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAV 1291
Query: 212 AAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251
PP+ A PP A P AA P P +PGT
Sbjct: 1292 VTPPSPKGGPATSPPKGAPTPPAA-----TPPSPKGSPGT 1326
Score = 55.5 bits (132), Expect = 5e-08
Identities = 71/218 (32%), Positives = 77/218 (35%), Gaps = 36/218 (16%)
Query: 54 PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRA 113
PP AP A + P GG P + A P A G A P+ P AP
Sbjct: 1144 PPKGAPTTPAATPPSP-KGGLATPPPKGAPTTPAATPPSPKGGLATPS--PKGAPTT--P 1198
Query: 114 AATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCGGTSLG 164
AAT SP G A SP G GG S G + PA P P GG +
Sbjct: 1199 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATP 1258
Query: 165 AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP-----RP----GAPGTWPVGFA----V 211
A P AA P PS A P GAP P G P T P A
Sbjct: 1259 PPKGAPTPP--AATP--PSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPA 1314
Query: 212 AAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTP 249
A PP+ S PPP A P A V P P TP
Sbjct: 1315 ATPPSPKGSPGTPPPKGAPTPPA-----VTPPSPKGTP 1347
Score = 53.9 bits (128), Expect = 1e-07
Identities = 61/220 (27%), Positives = 72/220 (32%), Gaps = 20/220 (9%)
Query: 54 PPTVAPAASAGS----QEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP-PCRAP 108
PP P S + +E P P PA S P +A + PA P P AP
Sbjct: 881 PPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAP 940
Query: 109 GRGRAAATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCG 159
AAT SP G A SP GG S G + PA P P G
Sbjct: 941 TP--PAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKG 998
Query: 160 GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAA 219
G + + A P A P SP S P + P A P G A P A
Sbjct: 999 GPATPSPKGAPTPP--AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGA 1056
Query: 220 SVAPPP--PAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
P P+ G PA P P + PA+
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096
Score = 52.8 bits (125), Expect = 3e-07
Identities = 61/219 (27%), Positives = 76/219 (34%), Gaps = 33/219 (15%)
Query: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP 104
P GA +PP P + GS P P A P A+ + GPA P
Sbjct: 1029 PKGAS---TPPAATPPSPKGS--------PAATPLPKGA--PTTPAATLPSPKGGPATPS 1075
Query: 105 CRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLG 164
+ AAT SP G A SP G AT S G + P + P +
Sbjct: 1076 LKGAPTP-PAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPP 1134
Query: 165 AGSRALRRPGSAALPRSPSSSRRWAAMPGPGA-----PRPGAPGTWPVGFAVAAPPAAAA 219
+ L P P +P+ A P P P GAP T A PP+
Sbjct: 1135 SPKGGLATPPPKGAPTTPA-----ATPPSPKGGLATPPPKGAPTT-----PAATPPSPKG 1184
Query: 220 SVAPPPPAVAGAPAAAF----RGWVAAPDPGCTPGTENA 254
+A P P A AA +G +A P P P T A
Sbjct: 1185 GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAA 1223
Score = 48.9 bits (115), Expect = 4e-06
Identities = 69/213 (32%), Positives = 78/213 (36%), Gaps = 25/213 (11%)
Query: 55 PTVAPAASAGSQEHPGAGG---PLCFPARSAAWGPPAR-ASRAAGRRAGPAGP-PCRAPG 109
P APA S S A P PA + G P A+ + GPA P P AP
Sbjct: 905 PKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPT 964
Query: 110 RGRAAATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCGG 160
AAT SP G A SP G GG S G + PA P P G
Sbjct: 965 P--PAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGS 1022
Query: 161 TSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAPRPGAPGTWPVGFAVAAPPAAAA 219
+ + P AA P SP S AA P P GAP A T P A P+
Sbjct: 1023 PAATPFPKGASTP-PAATPPSPKGSP--AATPLPKGAPTTPA-ATLPSPKGGPATPSLKG 1078
Query: 220 SVAPP---PPAVAGAPAAAFRGWVAAPDPGCTP 249
+ PP PP+ G PA P P TP
Sbjct: 1079 APTPPAATPPSPKGGPATPSPKGAPMP-PAATP 1110
Score = 43.5 bits (101), Expect = 2e-04
Identities = 59/227 (25%), Positives = 77/227 (33%), Gaps = 37/227 (16%)
Query: 53 SPPTVAPAASAG---SQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPG 109
+PP P + G + H GA P S GP S G PA P G
Sbjct: 1265 TPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPAT--SPPKGAPTPPAATPPSPKG 1322
Query: 110 RGRAAATRRSPAP-GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSR 168
+ +P P SP G T +S G + ++ P P T G
Sbjct: 1323 SPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGP 1382
Query: 169 ALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVA-APPAAAASVAPP--- 224
A+ +P S +R A+P P P +P P+ A A P A P
Sbjct: 1383 AM----------TPPSPKRGPAIPSPKGD-PTSPAVIPLSPKKAPATPVTREGAATPSKG 1431
Query: 225 ---PPAVA-----GAPA-AAFRGWVAAPD-------PGCTPGTENAP 255
PPAV APA +A +G A P P TP + P
Sbjct: 1432 DLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEP 1478
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 57.0 bits (136), Expect = 2e-08
Identities = 59/176 (33%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 85 GPPARASRAAGRRAGPAGPPCR---APGRGRAAATRRSPAPGTARGSPAGVERAGGATAA 141
GPP + S A +R PP A G A A P GSPA AG A+A
Sbjct: 334 GPPIKVSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPA----AGAASAD 389
Query: 142 SSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGA 201
++A R+ PA P G T P S P P S +AA P GA P A
Sbjct: 390 TAA--RAAPAAPADPDSGATP--------EDPDSGTAPADPDSGA-FAADPDSGAA-PAA 437
Query: 202 PGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
P A P + AA AP P AP A A PD G P APA+
Sbjct: 438 P---------ADPDSGAAPDAPADPDSGAAPDAP-----ADPDAGAAPEAPAAPAA 479
Score = 52.0 bits (123), Expect = 5e-07
Identities = 56/197 (28%), Positives = 71/197 (36%), Gaps = 20/197 (10%)
Query: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP 104
P R PP AA GG + P + A A AA RA PA
Sbjct: 343 PDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASADTAA--RAAPA--- 397
Query: 105 CRAPGRGRAAATRRSPAPGTARGSP-AGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
AP + AT P GTA P +G A + A+ A + P
Sbjct: 398 --APADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAAPAAPADPDSGAAPDAPADPDS 455
Query: 164 GAGSRALRRPGSAALPRSPSS---SRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAAS 220
GA A P + A P +P++ + AA P AP GAP AP A+A
Sbjct: 456 GAAPDAPADPDAGAAPEAPAAPAAAETRAAHVAPAAPDAGAP---------TAPAASATR 506
Query: 221 VAPPPPAVAGAPAAAFR 237
A A + APA+ R
Sbjct: 507 AAQVRRAASAAPASGAR 523
Score = 40.4 bits (93), Expect = 0.002
Identities = 49/170 (28%), Positives = 65/170 (38%), Gaps = 21/170 (12%)
Query: 69 PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP-----CRAPGRGRAAATRRSPAPG 123
PGA G P P A AG R G + PP G G SP PG
Sbjct: 189 PGAAGVPGAPPEE----PQALRPAKAGSRGGYSPPPEETMPFELDGEGFGDD---SPPPG 241
Query: 124 TARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPS 183
+R + A A+S+ R PA PP ++G+ S+ RP P + +
Sbjct: 242 LSRVIAQVDGSSQFAAVAASSAVRLTPAANAPPLWVPGAIGSPSQEAVRP-----PSNFT 296
Query: 184 SSRRWAAMPGPGAPRPGAP-GTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232
S W + GP AP G + +PP A + PP V+GAP
Sbjct: 297 GSSPWMEISGPPFEIGSAPAGVDDTPVNMDSPPIA---LDGPPIKVSGAP 343
Score = 36.6 bits (83), Expect = 0.022
Identities = 64/234 (27%), Positives = 79/234 (33%), Gaps = 22/234 (9%)
Query: 46 AGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAW--GPPARASRAAGR--RAGPA 101
AG+R G+SPP E G P +R A G A+ AA R PA
Sbjct: 210 AGSRGGYSPPPEETMPFELDGEGFGDDSPPPGLSRVIAQVDGSSQFAAVAASSAVRLTPA 269
Query: 102 G--PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSA--GTRSVPARRLPPP 157
PP PG + + P GS +E +G SA G P PP
Sbjct: 270 ANAPPLWVPGAIGSPSQEAVRPPSNFTGSSPWMEISGPPFEIGSAPAGVDDTPVNMDSPP 329
Query: 158 CG--GTSLGAGSRALRRPGSAALPRSPSSSRRWAAM----------PGPGAPRPGAPGTW 205
G + +R + P ++ A PG G+P GA
Sbjct: 330 IALDGPPIKVSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASAD 389
Query: 206 PVGFAVAAPPAAAASVAPPPPAVAG-APAAAFRGWVAA-PDPGCTPGTENAPAS 257
A A PA S A P +G APA G AA PD G P P S
Sbjct: 390 TAARAAPAAPADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAAPAAPADPDS 443
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 56.6 bits (135), Expect = 2e-08
Identities = 71/230 (30%), Positives = 84/230 (36%), Gaps = 35/230 (15%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEH------PGAGGPLCFPARSAAWGPPARASRAAGRR 97
GP G PP PA G + PG GP P GPP
Sbjct: 759 GPRGPTGPIGPP--GPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP---------- 806
Query: 98 AGPAGPPCRAPGR-GRAAATRRSPAPG-TARGSPAGVE-RAGGATAASSAGTRSVPARRL 154
GPAG P APG+ G APG G P GV GG+ A G + V R
Sbjct: 807 -GPAGFP-GAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERG 864
Query: 155 PPPCGGTSLGAGSRALRRPGSA---ALPRSPSSSRRWAAMPGP--GAPRPGAPG-TWPVG 208
P G + G+R L P + P PS S PGP PG+PG + P G
Sbjct: 865 SPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKG 924
Query: 209 FA-----VAAPPAAAASVAPPPPAVAGAPAA-AFRGWVAAPDPGCTPGTE 252
A +P A AP P +AG A G P P +PG +
Sbjct: 925 DAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQ 974
Score = 56.2 bits (134), Expect = 3e-08
Identities = 71/218 (32%), Positives = 84/218 (38%), Gaps = 28/218 (12%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G+ PP P+ S G PG G P GP A + + + A
Sbjct: 882 GPPGSNGNPGPP--GPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQG 939
Query: 104 PCRAPG----RGRAAATRRSPAPGT--ARGSPA--GVERAGGATAASS-AGTRSVPARRL 154
P APG G A + PG RGSP GV+ G A+ +G R P +
Sbjct: 940 PPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQG 999
Query: 155 PPPCGGTSLGAGSRALRRPGSAALPRSPSS-----SRRWAAMPG-PGAP-RPGAPGTWPV 207
P GT+ G PGS LP S R PG PGAP PG PG PV
Sbjct: 1000 LPGLAGTAGEPGRDG--NPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPG--PV 1055
Query: 208 GFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP 245
G A + + A P AGAP A G AP P
Sbjct: 1056 GPAGKSGDRGESGPAGP----AGAPGPA--GSRGAPGP 1087
Score = 50.4 bits (119), Expect = 1e-06
Identities = 63/215 (29%), Positives = 72/215 (33%), Gaps = 25/215 (11%)
Query: 57 VAPAASAGSQEHPGAGGPLCFPARSAAWGPPA----RASRAAGRRAGPAGPPCRAPGRGR 112
V PA S GS PG G + A GPP S GPAG P APG
Sbjct: 353 VGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIP-GAPG--- 408
Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR-------LPPPCGGTSLGA 165
R P P A G+P GGA G + P R +P G
Sbjct: 409 LMGARGPPGPAGANGAPG---LRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465
Query: 166 GSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-TWPVGFAVAAPPAAAASVAPP 224
+ PG+ LP + R GP P G PG P G A PA A
Sbjct: 466 KDGSPGEPGANGLP-GAAGERGAPGFRGPAGPN-GIPGEKGPAGERGAPGPAGPRGAAGE 523
Query: 225 P--PAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
P V G P RG +P + G P S
Sbjct: 524 PGRDGVPGGP--GMRGMPGSPGGPGSDGKPGPPGS 556
Score = 50.1 bits (118), Expect = 2e-06
Identities = 59/222 (26%), Positives = 75/222 (33%), Gaps = 30/222 (13%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G++ P P +G + PG G FP G P + G R GP GP
Sbjct: 552 GPPGSQGESGRP--GPPGPSGPRGQPGVMG---FPGPKGNDGAPGKN----GERGGPGGP 602
Query: 104 -PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTS 162
P PG+ + P P G G G + +P PP G
Sbjct: 603 GPQGPPGKNGETGPQGPPGPTGPGGD------KGDTGPPGPQGLQGLPGTGGPPGENGKP 656
Query: 163 LGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP--RPGAPGTWPVGFAVAAPPAAAAS 220
G + G A P +P + A PG P GAPG G P +
Sbjct: 657 GEPGPK-----GDAGAPGAP-GGKGDAGAPGERGPPGLAGAPGL-RGGAGPPGPEGGKGA 709
Query: 221 VAPP-PPAVAGAPA----AAFRGWVAAPDPGCTPGTENAPAS 257
PP PP AG P RG + +P P G P +
Sbjct: 710 AGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGA 751
Score = 49.7 bits (117), Expect = 3e-06
Identities = 68/237 (28%), Positives = 79/237 (33%), Gaps = 43/237 (18%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GPAG PP + GS PG GP P ++ GPP GP+GP
Sbjct: 174 GPAGPPGPPGPP--GTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPG-----AIGPSGP 226
Query: 104 PCR--APGRGRAAATRRSPAPGTARGSPAGVE----------------RAGGATAASSAG 145
+ GR R P P +G PAG+ G A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKG-PAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKG 285
Query: 146 TRSVPARRLPPPCGGTSLGAGSRALRRPG--SAALPRSPSSSRRWAAMPGPGAPRPGAPG 203
+P P G G R RPG AA R +R PGP PG PG
Sbjct: 286 ENGLPGENGAPGPMGPRGAPGERG--RPGLPGAAGARGNDGARGSDGQPGP----PGPPG 339
Query: 204 TWPVGFAVAAPPAAAASVAPP-PPAVAGAPA----AAFRGWVAAPDPGCTPGTENAP 255
T GF P A V P P GAP +G A P PG +P
Sbjct: 340 T--AGF--PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSP 392
Score = 47.0 bits (110), Expect = 2e-05
Identities = 51/181 (28%), Positives = 59/181 (32%), Gaps = 14/181 (7%)
Query: 64 GSQEHPGAGGPLCFPARSAAWGPPARASRAAGR-RAGPAGPPCRAPGRGRAAATRRSPAP 122
G PGA G P GP A ++ R +GPAGP APG A +R +P P
Sbjct: 1035 GENGSPGAPGA---PGHPGPPGPVGPAGKSGDRGESGPAGP-AGAPG---PAGSRGAPGP 1087
Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182
RG G A G P P G GS P P P
Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147
Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAP-----PAAAASVAPPPPAVAGAPAAAFR 237
+ PGP P PG G + +P P P P G AAA
Sbjct: 1148 PGKDGTSGHPGPIGP-PGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIA 1206
Query: 238 G 238
G
Sbjct: 1207 G 1207
Score = 32.3 bits (72), Expect = 0.42
Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
+P + PA G+ PG GP S GPP + + GP GPP RG
Sbjct: 1117 APGSPGPAGQQGAIGSPGPAGPRGPVGPS---GPPGKDGTSG--HPGPIGPPGPRGNRGE 1171
Query: 113 AAATRRSPAPGTARGSPAGVERA-----GGATAASSAGTRSVPARRLPPPCG 159
+ PG + P G A GG AA+ AG A P G
Sbjct: 1172 RGSEGSPGHPG--QPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYYG 1221
Score = 30.0 bits (66), Expect = 2.1
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 172 RPGSAALPRSPSSSRRWAAMPG----PGAP-RPGAPGT-WPVGFAVAAPPAAAASVAPP- 224
RP + P+ P +PG PG P +PG+PG+ P G + P + +P
Sbjct: 97 RPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCP-TGPQNYSPQY 155
Query: 225 -----PPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
VA A + G P P PGT P S
Sbjct: 156 DSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGS 193
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 56.6 bits (135), Expect = 2e-08
Identities = 70/267 (26%), Positives = 88/267 (32%), Gaps = 63/267 (23%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G + AP G PG P +P++ + GP R R A + A GP
Sbjct: 256 GPGAHASGAAGTAPAPP---GEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADKDAASCGP 312
Query: 104 PCR--APGRGRAAATRRSP--APGTARGSPAGVERAGGATAASSAGTRSVPARRLPP--- 156
A RG A + SP SP + A A AA++AG P P
Sbjct: 313 GAAVAAVERGAAGLPKASPFSVESLLSDSPPRRKAASNAAAAAAAGLDFAPGLPCAPRTL 372
Query: 157 -------------------PCGGTSLGAGSRALRR--PGSAALPRSPSSSRRWAAMPGPG 195
P GAG + P + A+P +P + + A GPG
Sbjct: 373 IGKGHFLLYPITQPLGFLVPQAALKGGAGLEPAPKDAPPAPAVPPAPPAQASFGAFSGPG 432
Query: 196 -AP-------------RPGAPGTWPVGFAVAAPPAAA------------ASVAPPPPAVA 229
AP PGAP P F A AA A APPPPA +
Sbjct: 433 GAPDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGPAPPPPAPS 492
Query: 230 GAPA------AAFRGWVAAPDPGCTPG 250
P A P+PG G
Sbjct: 493 PRPGPRPPSPAEEPATCGVPEPGAAAG 519
Score = 51.2 bits (121), Expect = 9e-07
Identities = 73/266 (27%), Positives = 95/266 (35%), Gaps = 68/266 (25%)
Query: 38 RYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRR 97
+++K L + R HSP ++ ++ S G GG + PP
Sbjct: 206 KHEKKLLKSQGRHLHSPGGLSLHSAPSSDSDSGGGG--------LSPEPPE--------- 248
Query: 98 AGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPP 157
P P + PG + A +PAP +P + A + S AG + P R
Sbjct: 249 --PPPPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADKD 306
Query: 158 CGGTSLGAGSRALRRPGSAALPR----------SPSSSRRWAAMPGPGAPRPG---APG- 203
GA A+ R G+A LP+ S S RR AA A G APG
Sbjct: 307 AASCGPGAAVAAVER-GAAGLPKASPFSVESLLSDSPPRRKAASNAAAAAAAGLDFAPGL 365
Query: 204 ------------------TWPVGFAVAAPPAA---------AASVAPPPPAVAGAPAA-- 234
T P+GF V P AA A APP PAV AP A
Sbjct: 366 PCAPRTLIGKGHFLLYPITQPLGFLV--PQAALKGGAGLEPAPKDAPPAPAVPPAPPAQA 423
Query: 235 ---AFRGWVAAPDPGCTPGTENAPAS 257
AF G APD + +A AS
Sbjct: 424 SFGAFSGPGGAPDSAFARRSPDAVAS 449
Score = 41.6 bits (96), Expect = 7e-04
Identities = 50/149 (33%), Positives = 60/149 (40%), Gaps = 36/149 (24%)
Query: 78 PARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGG 137
PA + PPA+AS G +GP G P +A RRSP A SP G
Sbjct: 411 PAPAVPPAPPAQAS--FGAFSGPGGAP-------DSAFARRSP---DAVASP-------G 451
Query: 138 ATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP 197
A A + A R + + GG AG+ G A P +PS P PG P
Sbjct: 452 APAPAPAPFRDLASAAATEGGGGDCADAGT-----AGPAPPPPAPS--------PRPG-P 497
Query: 198 RPGAPGTWPVGFAVAAPPAAAASVAPPPP 226
RP +P P V P AAA P PP
Sbjct: 498 RPPSPAEEPATCGVPEPGAAA---GPSPP 523
Score = 30.4 bits (67), Expect = 1.6
Identities = 34/103 (33%), Positives = 36/103 (34%), Gaps = 18/103 (17%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPAR---SAAWGPPARASRAAGRRAGP 100
GP GA P + S + PGA P P R SAA A AGP
Sbjct: 430 GPGGA-----PDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGP 484
Query: 101 AGPP--------CRAPGRGRAAATRRSPAPGTARG--SPAGVE 133
A PP R P AT P PG A G P G E
Sbjct: 485 APPPPAPSPRPGPRPPSPAEEPATCGVPEPGAAAGPSPPEGEE 527
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 56.2 bits (134), Expect = 3e-08
Identities = 62/189 (32%), Positives = 74/189 (39%), Gaps = 31/189 (16%)
Query: 80 RSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGAT 139
R+ AW P A+ A R AGPP AP AA S A A PA V A
Sbjct: 92 RAVAWRP---AAAPAAVRPPAAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPAA---- 144
Query: 140 AASSAGTRSVPARRLPPPCG--GTSLGAGSRALRRPGSAAL-PRSPSSSRRWAAMPG--- 193
VPA PP G +L A A P +A+L SP ++ AA P
Sbjct: 145 ---------VPAAVRPPAAGPPAAALAAVYPAAADPSAASLCAASPLAAVPAAASPAAVA 195
Query: 194 -----PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 248
PGA P A A P AA+ + A P +A PAAA R AAP C
Sbjct: 196 PAAVCPGAAGPSAASLCAASQPAAVPAAASPAAAAP---LAVNPAAAARA-AAAPAAACV 251
Query: 249 PGTENAPAS 257
+PA+
Sbjct: 252 QSVAESPAT 260
Score = 50.1 bits (118), Expect = 2e-06
Identities = 63/244 (25%), Positives = 85/244 (34%), Gaps = 30/244 (12%)
Query: 4 SRQRKIRPPHSDKDRDFRAVVPQ-----VNELQRKGLFWRYQKTLGPAGARRGHSPPTVA 58
+++RK R R+ + P V + + WR PA A PP
Sbjct: 58 TKERKTRGDSCGNTRNLYPLTPWSAPVVVPSALTRAVAWR------PAAAPAAVRPPAAG 111
Query: 59 PAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPC--RAPGRGRAAAT 116
P A+A + P A P A A PPA A PA P R P G AA
Sbjct: 112 PPAAAPAAVCPAAADPSA--ASLCAASPPA---------AVPAAVPAAVRPPAAGPPAAA 160
Query: 117 RRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSA 176
+ P A S A + A A +A + + A P A A +P +
Sbjct: 161 LAAVYPAAADPSAASLCAASPLAAVPAAASPAAVAPAAVCPGAAGPSAASLCAASQPAAV 220
Query: 177 ALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVA-----PPPPAVAGA 231
SP+++ A P A AP V +VA PA ++A PP P
Sbjct: 221 PAAASPAAAAPLAVNPAAAARAAAAPAAACVQ-SVAESPATPLAIAQPVSFPPAPVPCAV 279
Query: 232 PAAA 235
P A
Sbjct: 280 PPLA 283
Score = 34.7 bits (78), Expect = 0.084
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 178 LPRSPSSSRRWAAMPGPGAPRP---GAPGTWPVGFAVAA--PPAAAASVAPPPPAVAGAP 232
+P + + + W P A RP G P P AA P AA+ A PP AV A
Sbjct: 86 VPSALTRAVAWRPAAAPAAVRPPAAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPAAV 145
Query: 233 AAAFRGWVAAP 243
AA R A P
Sbjct: 146 PAAVRPPAAGP 156
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 55.8 bits (133), Expect = 4e-08
Identities = 64/216 (29%), Positives = 82/216 (37%), Gaps = 31/216 (14%)
Query: 38 RYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRR 97
RY+ LG G +R PP AP+A G C P + PP + R R
Sbjct: 76 RYRDLLGEEGLQRPREPPAAAPSA---------GGAAPCSPRGARRGEPPQQQPRRRRRE 126
Query: 98 AGPAGPPCRAPGRGRAAA--------TRRSPAP-GTARGSPAGVERAGGATAASSAGTRS 148
P P A R AA +RR+P G ++GSP A AA + S
Sbjct: 127 KEPEEEPAGAAARAADAACNGLPGSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARAS 186
Query: 149 VPARRLPPPCGGTSLGAGSRALRRPGS-AALPRSPSSSRRWA-AMPGP---GAPRPGAPG 203
A + C L L PG ALP S ++ + A A+P GA R G
Sbjct: 187 CAAAKTQGRCCWECLQNNLAVL--PGELGALPHSATAEEKPARALPAQDDRGASREREEG 244
Query: 204 TW----PVGFAVAAPPAA--AASVAPPPPAVAGAPA 233
PV +PPA AA+ PPA+ PA
Sbjct: 245 ALAEPAPVPAVAHSPPATVEAATSRASPPALLPGPA 280
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 55.1 bits (131), Expect = 6e-08
Identities = 59/192 (30%), Positives = 72/192 (37%), Gaps = 35/192 (18%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G R PP P + G + G GP P + GP GPAGP
Sbjct: 449 GPRGDRGSQGPP--GPTGNKGQKGEKGEPGP---PGPAGERGP-----------IGPAGP 492
Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPA--GVE-RAGGATAASSAGTRSVPARRLPPPCGG 160
P G+G ++ S P +RGSP G + +G G +P + PP G
Sbjct: 493 PGERGGKG----SKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPPGFQG 548
Query: 161 TSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAAS 220
G + PG LP P MPGP P PG PG P G A P A +
Sbjct: 549 LQGTVGEPGV--PGPRGLPGLPGV----PGMPGPKGP-PGPPG--PSG---AVVPLALQN 596
Query: 221 VAPPPPAVAGAP 232
P P G P
Sbjct: 597 EPTPAPEDNGCP 608
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 54.7 bits (130), Expect = 8e-08
Identities = 69/219 (31%), Positives = 77/219 (35%), Gaps = 33/219 (15%)
Query: 43 LGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
+GP GAR P T G + H G G P G P A G P
Sbjct: 159 VGPQGARG--FPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPG----APGENGTPGQ 212
Query: 103 PPCRA-PG-RGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGG 160
R PG RGR A P P ARGS V G A SAG P P P G
Sbjct: 213 TGARGLPGERGRVGA----PGPAGARGSDGSVGPVGPAGPIGSAGPPGFPG--APGPKG- 265
Query: 161 TSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP-----RPGAPGTWPVGFAVAAPP 215
+GA G+A P P+ R +PG P PGA G A P
Sbjct: 266 -EIGA-------VGNAG-PAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPG 316
Query: 216 AAAASVAPPPPAVAG----APAAAFRGWVAAPDPGCTPG 250
A A P P + G A A RG V P P + G
Sbjct: 317 VAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKG 355
Score = 50.1 bits (118), Expect = 2e-06
Identities = 62/224 (27%), Positives = 77/224 (34%), Gaps = 25/224 (11%)
Query: 44 GPAGARR-----GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWG--------PPARA 90
GPAG R G S P V P + G+ GA G P + A G P A
Sbjct: 277 GPAGPRGEVGLPGLSGP-VGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGA 335
Query: 91 SRAAGRRA-----GPAGPPCRAPGRGR--AAATRRSPAPGTARGSPAGVERAGGATAASS 143
+ A G R GPAG + +G +A + P P G AG A
Sbjct: 336 AGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP 395
Query: 144 AGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR--PGA 201
G R P R P G + G R A R P+ PG PR PG+
Sbjct: 396 PGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGS 455
Query: 202 PGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP 245
PG +G A P + P + A A G + P P
Sbjct: 456 PGN--IGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGP 497
Score = 45.4 bits (106), Expect = 5e-05
Identities = 58/186 (31%), Positives = 65/186 (34%), Gaps = 11/186 (5%)
Query: 51 GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR-ASRAAGRRAGPAGPPCRAPG 109
G S P+ P G+ PG G P G P R +R A G GP
Sbjct: 634 GPSGPSGLPG-ERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGD 692
Query: 110 RGRAAATRRSPA-PGTARGSP---AGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGA 165
RG A A PA P RGSP V AG A AG P + G
Sbjct: 693 RGEAGAA--GPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGEN 750
Query: 166 GSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPP- 224
G P AA P P+ A G G P PG G +P PP + PP
Sbjct: 751 GVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGP-PGMTG-FPGAAGRTGPPGPSGISGPPG 808
Query: 225 PPAVAG 230
PP AG
Sbjct: 809 PPGPAG 814
Score = 43.1 bits (100), Expect = 2e-04
Identities = 61/216 (28%), Positives = 73/216 (33%), Gaps = 46/216 (21%)
Query: 59 PAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP-----PCRAPGRGRA 113
PA + G + GA GP + GP R S GPAGP P A G+ A
Sbjct: 686 PAGATGDRGEAGAAGP------AGPAGP--RGSPGERGEVGPAGPNGFAGPAGAAGQPGA 737
Query: 114 AATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP 173
R + P +G V G AA AG P P G G P
Sbjct: 738 KGERGAKGP---KGENGVVGPTGPVGAAGPAGPNGPPG-----PAGSRGDGGPPGMTGFP 789
Query: 174 GSAALPRSPSSSRRWAAMPGPGAP-----------------RPGAPGT-WPVGFAVAAPP 215
G+A P S + PGP P R G G P GFA P
Sbjct: 790 GAAGRTGPPGPSGI-SGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGP 848
Query: 216 AAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251
+ A A PP G P +G + AP PG+
Sbjct: 849 SGEAGTAGPP----GTPGP--QGLLGAPGILGLPGS 878
Score = 38.5 bits (88), Expect = 0.006
Identities = 62/217 (28%), Positives = 71/217 (32%), Gaps = 49/217 (22%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS-RAAGRRAGPAG 102
GP+G PP PA G + G GP+ A GPP A + AG AG
Sbjct: 799 GPSGISGPPGPP--GPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAG 856
Query: 103 PP--------CRAPG----------RGRAAATRRSPAPGT--------ARGSPAGVERAG 136
PP APG RG PG ARG P V G
Sbjct: 857 PPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPG 916
Query: 137 GATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGA 196
A AG P PP G G R PG+ P + A PGP
Sbjct: 917 VNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGY--PGNI----GPVGA---AGAPGPHG 967
Query: 197 P-----RPGAPG-TWPVGFAVAAPPAAAASVAPPPPA 227
P + G G T P G P A +V P P+
Sbjct: 968 PVGPAGKHGNRGETGPSG-----PVGPAGAVGPRGPS 999
Score = 37.4 bits (85), Expect = 0.013
Identities = 39/125 (31%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 43 LGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPA---RSAAWGPPARASRAAGRRA- 98
+GPAGA P P G + PG GP P + G P A + A
Sbjct: 987 VGPAGAVGPRGPS--GPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAP 1044
Query: 99 ---GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155
GPAGP A G A R+ PGT PAG+ G AG P P
Sbjct: 1045 GSVGPAGPRGPAGPSGPAGKDGRTGHPGTV--GPAGIR--GPQGHQGPAGPPGPPGPPGP 1100
Query: 156 PPCGG 160
P G
Sbjct: 1101 PGVSG 1105
Score = 33.5 bits (75), Expect = 0.19
Identities = 56/225 (24%), Positives = 66/225 (29%), Gaps = 48/225 (21%)
Query: 59 PAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRR 118
PA G + G GP GPP GP GPP G AA
Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPP-----------GPPGPPGPPGLGGNFAAQYD 82
Query: 119 SPAPGTARG-----SPAGVERAGGATAASS----AGTRSVPARRLPPPCGGTSLGAGSRA 169
G G P G A GA AG P + P G + G
Sbjct: 83 GKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAG 142
Query: 170 L-RRPGSAALPR-----SPSSSRRWAAMPG-PG-------------APRPGAPGTWPVGF 209
PG P P +R + PG PG +PGAPG
Sbjct: 143 EDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPG------ 196
Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENA 254
P A + P G P RG V AP P G++ +
Sbjct: 197 VKGEPGAPGENGTPGQTGARGLPGE--RGRVGAPGPAGARGSDGS 239
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 54.3 bits (129), Expect = 1e-07
Identities = 56/221 (25%), Positives = 81/221 (36%), Gaps = 36/221 (16%)
Query: 40 QKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS-------- 91
Q T P G SP T +P S P P P+R++ P+RAS
Sbjct: 461 QSTASPTG-----SPSTASPTGS------PSTASPTGSPSRASLTRTPSRASLTKMESTA 509
Query: 92 ---RAAGRR--------AGPAGPPCRAPGRGRA--AATRRSPAPGTARGSPAGVERAGGA 138
R R A P G P A G AA R+P+ + +P+ +
Sbjct: 510 SITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTPS 569
Query: 139 TAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWA----AMPGP 194
A+ + +V R+PP T + + + P SA L + S++ A P
Sbjct: 570 RASLTRTPSTVLLTRMPPSASPTGMPSRTSPTGMPSSALLTKMDSTASITRTPPRASPTE 629
Query: 195 GAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235
PR GT P PP A+ + PP + G P+ A
Sbjct: 630 TPPRASPTGTPPRASPTGTPPRASPTGTPPRASPTGTPSRA 670
Score = 45.8 bits (107), Expect = 4e-05
Identities = 57/223 (25%), Positives = 82/223 (36%), Gaps = 31/223 (13%)
Query: 38 RYQKTLGPAGARRGHSPPTVAPA---ASAGSQEHPGAGGPLCFPARSAAWGPPARAS-RA 93
R T P+ A PP +P + + P P R++ G P RAS
Sbjct: 391 RASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTG 450
Query: 94 AGRRAGPAGPPCRAPGRGRAAATRRSPAPGTA--RGSPAGV------ERAGGATAASSAG 145
RA P G A G + + +P TA GSP+ RA S+A
Sbjct: 451 TPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTAS 510
Query: 146 TRSVPARRLP-----------PPCGGTSLGAGSRA--LRRPGSAALPRSPSSSRRWAAMP 192
P+R P P ++G+ SRA R P A+L R+PS A++
Sbjct: 511 ITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSR----ASLT 566
Query: 193 GPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235
P R T PP+A+ + P + G P++A
Sbjct: 567 TPS--RASLTRTPSTVLLTRMPPSASPTGMPSRTSPTGMPSSA 607
Score = 45.4 bits (106), Expect = 5e-05
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS-RAAGRRAGPAGPPCRAPGRG 111
+PPT P+ ++ ++ P P+R++ G P+ AS RA G P RA +G
Sbjct: 2 APPTRTPSRASPTRT-PSTASLTGTPSRASLTGTPSTASLMGTPSRASLTGTPPRASLKG 60
Query: 112 RAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALR 171
+ +P +R S ++ + T S + +R+PP T + +R
Sbjct: 61 TTSMASLMVSP--SRASLTRMQSSSLLTRTPSMAS----LKRMPPRASRTRTLPRASLMR 114
Query: 172 RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGA 231
RP +A+L RSPS R + P R T A+ P A+ + PP ++
Sbjct: 115 RPSTASLTRSPS---RASLTTTPS--RASLSMTPSTAAALTMPSRASLTRTPPRASLTMT 169
Query: 232 PAAA 235
P+ A
Sbjct: 170 PSTA 173
Score = 41.2 bits (95), Expect = 9e-04
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 7/157 (4%)
Query: 86 PPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTAR--GSPAGVERAGGATAASS 143
PP + RA P G P A G + + +P TA G + G AS
Sbjct: 335 PPRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRASP 394
Query: 144 AGTRSVPA-RRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMP---GPGAPRP 199
GT S + R PP T + + + + +A+ R+P + P G P
Sbjct: 395 TGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSR 454
Query: 200 GAP-GTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235
+P GT +P A+ + +P + G+P+ A
Sbjct: 455 ASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRA 491
Score = 38.1 bits (87), Expect = 0.008
Identities = 57/236 (24%), Positives = 84/236 (35%), Gaps = 40/236 (16%)
Query: 45 PAGARRGHSPP----TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAG----- 95
P+ A +PP T+ P+ ++ ++ P A P P+R++ G P+ AS
Sbjct: 152 PSRASLTRTPPRASLTMTPSTASLTRTPPRAS-PTGMPSRTSPTGMPSTASLTKMDSTAS 210
Query: 96 -----RRAGPAGPPCRAPGRGRAAATRRSPAPGTA-------RGSPAG-VERAGGATAAS 142
RA P G P RA G S P TA R SP G + R S
Sbjct: 211 ITRTLSRASPTGTPPRASPTGSPPRASLSMMPSTALLIRTPPRASPTGMLSRTSLTKMDS 270
Query: 143 SAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAP 202
+A P+R GT P A+L +PS++ + PR
Sbjct: 271 TASITRTPSRPSTASPTGT-----------PSRASLSMTPSTASLMRML-----PRASPT 314
Query: 203 GTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGTENAPAS 257
G A+ S PP ++ P+ A+ G + P TP + S
Sbjct: 315 GMLSRTSLTKMDSTASISRTPPRASITRTPSRASPTGKPSTASPTGTPSRASPTGS 370
Score = 37.0 bits (84), Expect = 0.017
Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 8/150 (5%)
Query: 91 SRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVP 150
S A+ R P R P R A+ P+ + G+P+ G + AS G S
Sbjct: 327 STASISRTPPRASITRTPSR---ASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTA 383
Query: 151 A-RRLPPPCGGTSLGAGSRALRRPGSAA----LPRSPSSSRRWAAMPGPGAPRPGAPGTW 205
+ PP T + + R+P A+ L R+ + A P PR GT
Sbjct: 384 SPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTP 443
Query: 206 PVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235
P P A+ + + G+P+ A
Sbjct: 444 PRASPTGTPSRASPTGTQSTASPTGSPSTA 473
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 53.1 bits (126), Expect = 2e-07
Identities = 57/208 (27%), Positives = 79/208 (37%), Gaps = 27/208 (12%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQE----HPGAGGPLCFPARSAAWGPPARASRAA----- 94
GP R+G PP G Q P AG PL S P AS+AA
Sbjct: 471 GPGPQRQG--PPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528
Query: 95 -GRRA-----GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRS 148
GR++ GP PP P + + P T + S +G + A R
Sbjct: 529 QGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQ 588
Query: 149 VPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAPRPGAPGTWPV 207
P ++ P P G T + + + R G P++ + + PGP G P+P
Sbjct: 589 GPPQKPPGPAGPTRQASQAGPVPRTG------PPTTQQPRPSGPGPAGRPKPQLA---QK 639
Query: 208 GFAVAAPPAAAASVAPPPPAVAGAPAAA 235
PPA AA+ PP P + +PA A
Sbjct: 640 PSQDVPPPATAAAGGPPHPQLKASPAQA 667
Score = 50.8 bits (120), Expect = 1e-06
Identities = 56/187 (29%), Positives = 70/187 (37%), Gaps = 45/187 (24%)
Query: 78 PARSAAWGPPARASRAAGRRAG--PAGPPC--RAPGRGRAAATRRSPAPGTARGSPAGVE 133
P R + P+ + GR+ PAGPP R P +G P PG R P
Sbjct: 428 PGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPP----QPGPGPQRQGP---- 479
Query: 134 RAGGATAASSAGTRSVPARRLPPPCGGTSLG-----AGSRALRR-PGSAALPRSPSSSRR 187
P ++ PPP G L AGS +R P + P+ P+S
Sbjct: 480 ----------------PLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQ-- 521
Query: 188 WAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP-- 245
AA P G R P V APPAA +P P AG P A + V+ P P
Sbjct: 522 -AAPPTQGQGRQSRP----VAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPK 576
Query: 246 --GCTPG 250
G PG
Sbjct: 577 ASGAPPG 583
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 52.8 bits (125), Expect = 3e-07
Identities = 73/249 (29%), Positives = 81/249 (32%), Gaps = 59/249 (23%)
Query: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAG--------- 95
PAG PP A AS +E PG G PP+R S G
Sbjct: 828 PAGPSEPPGPPAPAGPASDTEEEEPGPEGT-----------PPSRGSSGEGLPFAEEGNL 876
Query: 96 ---RRAGPAGPPCRAPGRGRAAATRRSPAP----------GTARGSPAGVERAGGATAAS 142
+R PAGPP R +P P T + P ER TA
Sbjct: 877 TIKQRPKPAGPP-----------PRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALL 925
Query: 143 SAGTRSV---PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP 199
+ G S PA LP P G S A S P S P+ AM P P P
Sbjct: 926 AFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCP 985
Query: 200 G------APGTWPVGFAVAAPPAA-----AASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 248
G A W A PAA A AP P +VA AF G AP G
Sbjct: 986 GPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVA-CTQLAFSGPKLAPRLGPR 1044
Query: 249 PGTENAPAS 257
P P S
Sbjct: 1045 PVPPPRPES 1053
Score = 41.6 bits (96), Expect = 7e-04
Identities = 49/180 (27%), Positives = 66/180 (36%), Gaps = 23/180 (12%)
Query: 47 GARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCR 106
G RR P + + E P GP + + P +A+ A G PP R
Sbjct: 553 GGRRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPAR 612
Query: 107 APGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAG 166
+P + A RS G ++ PA G S R++P PP +SL
Sbjct: 613 SPSQESIGA--RSRGSGHSQEQPAPQPSGGD---PSPPQERNLPEGTERPPKLCSSL--- 664
Query: 167 SRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPP 226
PG P + + P PG P PGAP W + +A PPA PP P
Sbjct: 665 ------PGQGPPPYVFMYPQGSPSSPAPGPP-PGAP--WAFSY-LAGPPA-----TPPDP 709
Score = 39.7 bits (91), Expect = 0.003
Identities = 70/249 (28%), Positives = 74/249 (29%), Gaps = 71/249 (28%)
Query: 51 GHSPPTVAPAASAGSQEHPGAGGPLCFP-ARSAAWGPPA------RASR----------- 92
G PP GS P G P P A S GPPA R R
Sbjct: 666 GQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPT 725
Query: 93 ---AAGRRAGPAGPPC-------RAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAAS 142
A G GP G R PGR T S P ARG+P A A
Sbjct: 726 EGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTP---RSQSFALRAR 782
Query: 143 SAGTRSVPARRL---------PPPCG---GTSLGAGSRALRRPGSAALPRSPSSSRRWAA 190
G P +RL PPP G GA R A P P
Sbjct: 783 RKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEP-------- 834
Query: 191 MPGPGAP----------RPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240
PGP AP PG GT PP+ +S P A G R
Sbjct: 835 -PGPPAPAGPASDTEEEEPGPEGT---------PPSRGSSGEGLPFAEEGNLTIKQRPKP 884
Query: 241 AAPDPGCTP 249
A P P TP
Sbjct: 885 AGPPPRETP 893
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 52.8 bits (125), Expect = 3e-07
Identities = 73/249 (29%), Positives = 81/249 (32%), Gaps = 59/249 (23%)
Query: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAG--------- 95
PAG PP A AS +E PG G PP+R S G
Sbjct: 910 PAGPSEPPGPPAPAGPASDTEEEEPGPEGT-----------PPSRGSSGEGLPFAEEGNL 958
Query: 96 ---RRAGPAGPPCRAPGRGRAAATRRSPAP----------GTARGSPAGVERAGGATAAS 142
+R PAGPP R +P P T + P ER TA
Sbjct: 959 TIKQRPKPAGPP-----------PRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALL 1007
Query: 143 SAGTRSV---PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP 199
+ G S PA LP P G S A S P S P+ AM P P P
Sbjct: 1008 AFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCP 1067
Query: 200 G------APGTWPVGFAVAAPPAA-----AASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 248
G A W A PAA A AP P +VA AF G AP G
Sbjct: 1068 GPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVA-CTQLAFSGPKLAPRLGPR 1126
Query: 249 PGTENAPAS 257
P P S
Sbjct: 1127 PVPPPRPES 1135
Score = 41.6 bits (96), Expect = 7e-04
Identities = 49/180 (27%), Positives = 66/180 (36%), Gaps = 23/180 (12%)
Query: 47 GARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCR 106
G RR P + + E P GP + + P +A+ A G PP R
Sbjct: 635 GGRRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPAR 694
Query: 107 APGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAG 166
+P + A RS G ++ PA G S R++P PP +SL
Sbjct: 695 SPSQESIGA--RSRGSGHSQEQPAPQPSGGD---PSPPQERNLPEGTERPPKLCSSL--- 746
Query: 167 SRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPP 226
PG P + + P PG P PGAP W + +A PPA PP P
Sbjct: 747 ------PGQGPPPYVFMYPQGSPSSPAPGPP-PGAP--WAFSY-LAGPPA-----TPPDP 791
Score = 39.7 bits (91), Expect = 0.003
Identities = 70/249 (28%), Positives = 74/249 (29%), Gaps = 71/249 (28%)
Query: 51 GHSPPTVAPAASAGSQEHPGAGGPLCFP-ARSAAWGPPA------RASR----------- 92
G PP GS P G P P A S GPPA R R
Sbjct: 748 GQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPT 807
Query: 93 ---AAGRRAGPAGPPC-------RAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAAS 142
A G GP G R PGR T S P ARG+P A A
Sbjct: 808 EGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTP---RSQSFALRAR 864
Query: 143 SAGTRSVPARRL---------PPPCG---GTSLGAGSRALRRPGSAALPRSPSSSRRWAA 190
G P +RL PPP G GA R A P P
Sbjct: 865 RKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEP-------- 916
Query: 191 MPGPGAP----------RPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240
PGP AP PG GT PP+ +S P A G R
Sbjct: 917 -PGPPAPAGPASDTEEEEPGPEGT---------PPSRGSSGEGLPFAEEGNLTIKQRPKP 966
Query: 241 AAPDPGCTP 249
A P P TP
Sbjct: 967 AGPPPRETP 975
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 52.4 bits (124), Expect = 4e-07
Identities = 73/247 (29%), Positives = 79/247 (31%), Gaps = 52/247 (21%)
Query: 44 GPAGAR--RGHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPA----- 88
GP G R RG + + A S G H PG GP FP GPP
Sbjct: 758 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 817
Query: 89 -----RASRAAGRRAGPAGPPCRAPGRGRAAAT-----RRSPA----------PGTA--R 126
R + GP GPP +G A T R P PGTA
Sbjct: 818 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 877
Query: 127 GSPAGVERAGGATAASSAGTRSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185
G+ G AG R P R LP GG L PG A P
Sbjct: 878 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP----GE 933
Query: 186 RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA--AFRGWVAAP 243
R A GP P PG PG P G PP AA P P +G V P
Sbjct: 934 RGAAGSGGPIGP-PGRPG--PQG-----PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 985
Query: 244 DPGCTPG 250
P PG
Sbjct: 986 GPAGPPG 992
Score = 51.2 bits (121), Expect = 9e-07
Identities = 64/237 (27%), Positives = 78/237 (32%), Gaps = 47/237 (19%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-ARASRAAGRRAGPAG 102
GP+G PP PA S G + G+GGP+ P R GPP A + GP G
Sbjct: 920 GPSG------PP--GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 971
Query: 103 PPCRAPGRGRAAATRRSPAPGTA-----------------------RGSPAGVERAGGAT 139
P R +G + PG A G P G
Sbjct: 972 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1031
Query: 140 AASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP----GSAALPRSPSSSRRWAAMPGPG 195
+AG P R P G G+R P G LP PS + GP
Sbjct: 1032 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP-GPSGEKGETGDVGPM 1090
Query: 196 APRPGAPG-TWPVGFAVA----APPAAAASVAPP----PPAVAGAPAAAFRGWVAAP 243
P PG PG P G A PP ++ PP P +G+P V P
Sbjct: 1091 GP-PGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGP 1146
Score = 43.5 bits (101), Expect = 2e-04
Identities = 66/231 (28%), Positives = 77/231 (33%), Gaps = 43/231 (18%)
Query: 44 GPAGARRGHSPPTVAPAASA-----------GSQEHPGAGGP---LCFPARSAAWGPPAR 89
GP G + G + PT P G +PG GP L FP A G +
Sbjct: 683 GPEGPK-GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGE--K 739
Query: 90 ASRAAGRRAGPAG---PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146
+R ++GP G P RG AT +S A GT+ G G
Sbjct: 740 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD----------------GP 783
Query: 147 RSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-T 204
P R LP P G PG LP P R G P PG PG
Sbjct: 784 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGP-PGPPGVV 841
Query: 205 WPVGFA-VAAPPAAAASVAPP-PPAVAGAPAAAFR-GWVAAPDPGCTPGTE 252
P G A P PP PP G P A + G P P PG +
Sbjct: 842 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD 892
Score = 39.7 bits (91), Expect = 0.003
Identities = 52/199 (26%), Positives = 60/199 (30%), Gaps = 48/199 (24%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G R PA S GS+ G G P A G + GP GP
Sbjct: 1229 GPLGKR--------GPAGSPGSEGRQGGKGAKGDPGAIGAPG-----------KTGPVGP 1269
Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
A P P RG P V + G A AG P PP G
Sbjct: 1270 ----------AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRG 1316
Query: 164 GAGSRALR----------------RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207
AG++ + G LP S + M PGA P PG P
Sbjct: 1317 DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1376
Query: 208 GFAVAAPPAAAASVAPPPP 226
A P A + P P
Sbjct: 1377 LPGPAGPKGAKGATGPGGP 1395
Score = 38.9 bits (89), Expect = 0.004
Identities = 40/159 (25%), Positives = 50/159 (31%), Gaps = 17/159 (10%)
Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
+P P AG PG G P G P +A GP GPP RG
Sbjct: 1260 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP--PGPVGPPGLPGLRGD 1317
Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
A A +G P + G G R +P + P G G+
Sbjct: 1318 AGAKGE-------KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1370
Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPR--------PGAPG 203
PG P+ + GPG P+ PG PG
Sbjct: 1371 PGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1409
Score = 33.5 bits (75), Expect = 0.19
Identities = 55/201 (27%), Positives = 65/201 (32%), Gaps = 50/201 (24%)
Query: 42 TLGPAGARRGHSPPTVAPAAS--AGSQEHPG-------AGGPLCFPARSAAWGPPARASR 92
T G G + PP AP AG + PG AGGP GPP A
Sbjct: 873 TAGKEGTKGDPGPPG-APGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGS 930
Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152
R A +G P PGR P P +G P +AG + VP
Sbjct: 931 PGERGAAGSGGPIGPPGR---------PGP---QGPP------------GAAGEKGVPGE 966
Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP----------RPGAP 202
+ P G T + PG A P + PG PG P
Sbjct: 967 K--GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPP 1024
Query: 203 GTWPVGFAVAAPPAAAASVAP 223
G P+G V P AA A P
Sbjct: 1025 G--PIG-PVGQPGAAGADGEP 1042
Score = 33.1 bits (74), Expect = 0.24
Identities = 50/193 (25%), Positives = 60/193 (31%), Gaps = 23/193 (11%)
Query: 64 GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRA-GPAGPPCRAPGRGRAAATRRSPAP 122
G + G GPL P G R G GPP +A RGRA A
Sbjct: 404 GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGA------- 456
Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182
ARG P G G +P LP G G++ L P R
Sbjct: 457 DGARGMP------GDPGVKGDRGFDGLPG--LPGEKGHRG-DTGAQGLPGPPGEDGERGD 507
Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 242
+PG PR P G + PP P P + P +G
Sbjct: 508 DGEIGPRGLPGESGPRGLLGPKGPPG--IPGPPGVRGMDGPQGPKGSLGP----QGEPGP 561
Query: 243 PDPGCTPGTENAP 255
P TPGT+ P
Sbjct: 562 PGQQGTPGTQGLP 574
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 52.4 bits (124), Expect = 4e-07
Identities = 73/247 (29%), Positives = 79/247 (31%), Gaps = 52/247 (21%)
Query: 44 GPAGAR--RGHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPA----- 88
GP G R RG + + A S G H PG GP FP GPP
Sbjct: 737 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 796
Query: 89 -----RASRAAGRRAGPAGPPCRAPGRGRAAAT-----RRSPA----------PGTA--R 126
R + GP GPP +G A T R P PGTA
Sbjct: 797 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 856
Query: 127 GSPAGVERAGGATAASSAGTRSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185
G+ G AG R P R LP GG L PG A P
Sbjct: 857 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP----GE 912
Query: 186 RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA--AFRGWVAAP 243
R A GP P PG PG P G PP AA P P +G V P
Sbjct: 913 RGAAGSGGPIGP-PGRPG--PQG-----PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 964
Query: 244 DPGCTPG 250
P PG
Sbjct: 965 GPAGPPG 971
Score = 51.2 bits (121), Expect = 9e-07
Identities = 64/237 (27%), Positives = 78/237 (32%), Gaps = 47/237 (19%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-ARASRAAGRRAGPAG 102
GP+G PP PA S G + G+GGP+ P R GPP A + GP G
Sbjct: 899 GPSG------PP--GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 950
Query: 103 PPCRAPGRGRAAATRRSPAPGTA-----------------------RGSPAGVERAGGAT 139
P R +G + PG A G P G
Sbjct: 951 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1010
Query: 140 AASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP----GSAALPRSPSSSRRWAAMPGPG 195
+AG P R P G G+R P G LP PS + GP
Sbjct: 1011 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP-GPSGEKGETGDVGPM 1069
Query: 196 APRPGAPG-TWPVGFAVA----APPAAAASVAPP----PPAVAGAPAAAFRGWVAAP 243
P PG PG P G A PP ++ PP P +G+P V P
Sbjct: 1070 GP-PGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGP 1125
Score = 43.5 bits (101), Expect = 2e-04
Identities = 66/231 (28%), Positives = 77/231 (33%), Gaps = 43/231 (18%)
Query: 44 GPAGARRGHSPPTVAPAASA-----------GSQEHPGAGGP---LCFPARSAAWGPPAR 89
GP G + G + PT P G +PG GP L FP A G +
Sbjct: 662 GPEGPK-GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGE--K 718
Query: 90 ASRAAGRRAGPAG---PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146
+R ++GP G P RG AT +S A GT+ G G
Sbjct: 719 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD----------------GP 762
Query: 147 RSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-T 204
P R LP P G PG LP P R G P PG PG
Sbjct: 763 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGP-PGPPGVV 820
Query: 205 WPVGFA-VAAPPAAAASVAPP-PPAVAGAPAAAFR-GWVAAPDPGCTPGTE 252
P G A P PP PP G P A + G P P PG +
Sbjct: 821 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD 871
Score = 39.7 bits (91), Expect = 0.003
Identities = 52/199 (26%), Positives = 60/199 (30%), Gaps = 48/199 (24%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G R PA S GS+ G G P A G + GP GP
Sbjct: 1208 GPLGKR--------GPAGSPGSEGRQGGKGAKGDPGAIGAPG-----------KTGPVGP 1248
Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
A P P RG P V + G A AG P PP G
Sbjct: 1249 ----------AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRG 1295
Query: 164 GAGSRALR----------------RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207
AG++ + G LP S + M PGA P PG P
Sbjct: 1296 DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1355
Query: 208 GFAVAAPPAAAASVAPPPP 226
A P A + P P
Sbjct: 1356 LPGPAGPKGAKGATGPGGP 1374
Score = 38.9 bits (89), Expect = 0.004
Identities = 40/159 (25%), Positives = 50/159 (31%), Gaps = 17/159 (10%)
Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
+P P AG PG G P G P +A GP GPP RG
Sbjct: 1239 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP--PGPVGPPGLPGLRGD 1296
Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
A A +G P + G G R +P + P G G+
Sbjct: 1297 AGAKGE-------KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1349
Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPR--------PGAPG 203
PG P+ + GPG P+ PG PG
Sbjct: 1350 PGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1388
Score = 33.5 bits (75), Expect = 0.19
Identities = 55/201 (27%), Positives = 65/201 (32%), Gaps = 50/201 (24%)
Query: 42 TLGPAGARRGHSPPTVAPAAS--AGSQEHPG-------AGGPLCFPARSAAWGPPARASR 92
T G G + PP AP AG + PG AGGP GPP A
Sbjct: 852 TAGKEGTKGDPGPPG-APGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGS 909
Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152
R A +G P PGR P P +G P +AG + VP
Sbjct: 910 PGERGAAGSGGPIGPPGR---------PGP---QGPP------------GAAGEKGVPGE 945
Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP----------RPGAP 202
+ P G T + PG A P + PG PG P
Sbjct: 946 K--GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPP 1003
Query: 203 GTWPVGFAVAAPPAAAASVAP 223
G P+G V P AA A P
Sbjct: 1004 G--PIG-PVGQPGAAGADGEP 1021
Score = 33.1 bits (74), Expect = 0.24
Identities = 50/193 (25%), Positives = 60/193 (31%), Gaps = 23/193 (11%)
Query: 64 GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRA-GPAGPPCRAPGRGRAAATRRSPAP 122
G + G GPL P G R G GPP +A RGRA A
Sbjct: 383 GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGA------- 435
Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182
ARG P G G +P LP G G++ L P R
Sbjct: 436 DGARGMP------GDPGVKGDRGFDGLPG--LPGEKGHRG-DTGAQGLPGPPGEDGERGD 486
Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 242
+PG PR P G + PP P P + P +G
Sbjct: 487 DGEIGPRGLPGESGPRGLLGPKGPPG--IPGPPGVRGMDGPQGPKGSLGP----QGEPGP 540
Query: 243 PDPGCTPGTENAP 255
P TPGT+ P
Sbjct: 541 PGQQGTPGTQGLP 553
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 52.4 bits (124), Expect = 4e-07
Identities = 73/247 (29%), Positives = 79/247 (31%), Gaps = 52/247 (21%)
Query: 44 GPAGAR--RGHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPA----- 88
GP G R RG + + A S G H PG GP FP GPP
Sbjct: 844 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 903
Query: 89 -----RASRAAGRRAGPAGPPCRAPGRGRAAAT-----RRSPA----------PGTA--R 126
R + GP GPP +G A T R P PGTA
Sbjct: 904 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 963
Query: 127 GSPAGVERAGGATAASSAGTRSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185
G+ G AG R P R LP GG L PG A P
Sbjct: 964 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP----GE 1019
Query: 186 RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA--AFRGWVAAP 243
R A GP P PG PG P G PP AA P P +G V P
Sbjct: 1020 RGAAGSGGPIGP-PGRPG--PQG-----PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 1071
Query: 244 DPGCTPG 250
P PG
Sbjct: 1072 GPAGPPG 1078
Score = 51.2 bits (121), Expect = 9e-07
Identities = 64/237 (27%), Positives = 78/237 (32%), Gaps = 47/237 (19%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-ARASRAAGRRAGPAG 102
GP+G PP PA S G + G+GGP+ P R GPP A + GP G
Sbjct: 1006 GPSG------PP--GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 1057
Query: 103 PPCRAPGRGRAAATRRSPAPGTA-----------------------RGSPAGVERAGGAT 139
P R +G + PG A G P G
Sbjct: 1058 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1117
Query: 140 AASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP----GSAALPRSPSSSRRWAAMPGPG 195
+AG P R P G G+R P G LP PS + GP
Sbjct: 1118 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP-GPSGEKGETGDVGPM 1176
Query: 196 APRPGAPG-TWPVGFAVA----APPAAAASVAPP----PPAVAGAPAAAFRGWVAAP 243
P PG PG P G A PP ++ PP P +G+P V P
Sbjct: 1177 GP-PGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGP 1232
Score = 43.5 bits (101), Expect = 2e-04
Identities = 66/231 (28%), Positives = 77/231 (33%), Gaps = 43/231 (18%)
Query: 44 GPAGARRGHSPPTVAPAASA-----------GSQEHPGAGGP---LCFPARSAAWGPPAR 89
GP G + G + PT P G +PG GP L FP A G +
Sbjct: 769 GPEGPK-GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGE--K 825
Query: 90 ASRAAGRRAGPAG---PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146
+R ++GP G P RG AT +S A GT+ G G
Sbjct: 826 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD----------------GP 869
Query: 147 RSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-T 204
P R LP P G PG LP P R G P PG PG
Sbjct: 870 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGP-PGPPGVV 927
Query: 205 WPVGFA-VAAPPAAAASVAPP-PPAVAGAPAAAFR-GWVAAPDPGCTPGTE 252
P G A P PP PP G P A + G P P PG +
Sbjct: 928 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD 978
Score = 39.7 bits (91), Expect = 0.003
Identities = 52/199 (26%), Positives = 60/199 (30%), Gaps = 48/199 (24%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G R PA S GS+ G G P A G + GP GP
Sbjct: 1315 GPLGKR--------GPAGSPGSEGRQGGKGAKGDPGAIGAPG-----------KTGPVGP 1355
Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
A P P RG P V + G A AG P PP G
Sbjct: 1356 ----------AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRG 1402
Query: 164 GAGSRALR----------------RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207
AG++ + G LP S + M PGA P PG P
Sbjct: 1403 DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1462
Query: 208 GFAVAAPPAAAASVAPPPP 226
A P A + P P
Sbjct: 1463 LPGPAGPKGAKGATGPGGP 1481
Score = 38.9 bits (89), Expect = 0.004
Identities = 40/159 (25%), Positives = 50/159 (31%), Gaps = 17/159 (10%)
Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
+P P AG PG G P G P +A GP GPP RG
Sbjct: 1346 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP--PGPVGPPGLPGLRGD 1403
Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
A A +G P + G G R +P + P G G+
Sbjct: 1404 AGAKGE-------KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1456
Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPR--------PGAPG 203
PG P+ + GPG P+ PG PG
Sbjct: 1457 PGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1495
Score = 33.5 bits (75), Expect = 0.19
Identities = 55/201 (27%), Positives = 65/201 (32%), Gaps = 50/201 (24%)
Query: 42 TLGPAGARRGHSPPTVAPAAS--AGSQEHPG-------AGGPLCFPARSAAWGPPARASR 92
T G G + PP AP AG + PG AGGP GPP A
Sbjct: 959 TAGKEGTKGDPGPPG-APGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGS 1016
Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152
R A +G P PGR P P +G P +AG + VP
Sbjct: 1017 PGERGAAGSGGPIGPPGR---------PGP---QGPP------------GAAGEKGVPGE 1052
Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP----------RPGAP 202
+ P G T + PG A P + PG PG P
Sbjct: 1053 K--GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPP 1110
Query: 203 GTWPVGFAVAAPPAAAASVAP 223
G P+G V P AA A P
Sbjct: 1111 G--PIG-PVGQPGAAGADGEP 1128
Score = 33.1 bits (74), Expect = 0.24
Identities = 50/193 (25%), Positives = 60/193 (31%), Gaps = 23/193 (11%)
Query: 64 GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRA-GPAGPPCRAPGRGRAAATRRSPAP 122
G + G GPL P G R G GPP +A RGRA A
Sbjct: 490 GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGA------- 542
Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182
ARG P G G +P LP G G++ L P R
Sbjct: 543 DGARGMP------GDPGVKGDRGFDGLPG--LPGEKGHRG-DTGAQGLPGPPGEDGERGD 593
Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 242
+PG PR P G + PP P P + P +G
Sbjct: 594 DGEIGPRGLPGESGPRGLLGPKGPPG--IPGPPGVRGMDGPQGPKGSLGP----QGEPGP 647
Query: 243 PDPGCTPGTENAP 255
P TPGT+ P
Sbjct: 648 PGQQGTPGTQGLP 660
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 52.4 bits (124), Expect = 4e-07
Identities = 70/238 (29%), Positives = 80/238 (33%), Gaps = 41/238 (17%)
Query: 44 GPAGARRGHSPPTVAPA----ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAG 99
GPAG R GH P+ P S G Q PG GP P SA P G
Sbjct: 66 GPAGPR-GHPGPSGPPGKPGYGSPGLQGEPGLPGP---PGPSAVGKPGVPGLPGKPGERG 121
Query: 100 PAGP-----PCRAPGRGRAAATRRSPAPGTARGSPAGVE---RAGGATAASSAGTRSVPA 151
P GP P PG R P P G PAG+ + G + G R P
Sbjct: 122 PYGPKGDVGPAGLPG------PRGPPGPPGIPG-PAGISVPGKPGQQGPTGAPGPRGFPG 174
Query: 152 RRLPPPCGGTSLGAGSR---ALRRPGSAALPRSPSSSRRWAAMPGPGAPR----PGAPG- 203
+ P G + G A RPG LP P + PG G PG PG
Sbjct: 175 EKGAPGVPGMNGQKGEMGYGAPGRPGERGLP-GPQGPTGPSGPPGVGKRGENGVPGQPGI 233
Query: 204 TWPVGFAVAAPPAAAASVAPP----PPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
GF P + PP PP G G AP PGT+ P +
Sbjct: 234 KGDRGF-----PGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGA 286
Score = 48.9 bits (115), Expect = 4e-06
Identities = 56/225 (24%), Positives = 69/225 (30%), Gaps = 18/225 (8%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G P ++ G Q GA GP FP A G P + G G
Sbjct: 139 GPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGR 198
Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR---LPPPCGG 160
P G T S PG + GV G G R P PP G
Sbjct: 199 PGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGI-----KGDRGFPGEMGPIGPPGPQG 253
Query: 161 TSLGAGSRALRRPGSAALPRSPS--SSRRWAAMPG-------PGAPRPGAPGTWPVGFAV 211
G + +PG+A P P ++ PG PG +PG PG
Sbjct: 254 PPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPA 313
Query: 212 AAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGTENAP 255
P A P + G P G + P PG+ P
Sbjct: 314 GLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLP 358
Score = 47.4 bits (111), Expect = 1e-05
Identities = 56/208 (26%), Positives = 69/208 (33%), Gaps = 27/208 (12%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G G + P P A G + PG+ G +P + GP GP G
Sbjct: 359 GPKG-ETGPAGPAGYPGAK-GERGSPGSDGKPGYPGKPGLDGPKGNPG-----LPGPKGD 411
Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTR---------SVPARRL 154
PG G P A+G P AG A GTR P +
Sbjct: 412 ----PGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKG 467
Query: 155 PPPCGGT--SLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG--TWPVGFA 210
P G G ++ L P P P +PGP P PG PG P GF
Sbjct: 468 DPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGP-PGPPGQAVMPEGFI 526
Query: 211 VAA--PPAAAASVAPPPPAVAGAPAAAF 236
A P + + V G P +AF
Sbjct: 527 KAGQRPSLSGTPLVSANQGVTGMPVSAF 554
Score = 41.6 bits (96), Expect = 7e-04
Identities = 60/235 (25%), Positives = 70/235 (29%), Gaps = 26/235 (11%)
Query: 43 LGPAGARRGHSPP------TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS----- 91
+GP G PP + +AG+ PG G P GPP
Sbjct: 243 MGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPG 302
Query: 92 --RAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSV 149
G R GPAG P +G PG G P + G S G
Sbjct: 303 LPGLKGER-GPAGLPGGPGAKGEQGPAGLPGKPGLT-GPPGNMGPQGPKGIPGSHGLPGP 360
Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP-GAPGT-WPV 207
P G G R PGS P P PG P P G PG P
Sbjct: 361 KGETGPAGPAGYPGAKGERG--SPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPP 418
Query: 208 GFAVAAPPAAAASV-----APPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
G PA A + P G P RG + P PG++ P S
Sbjct: 419 GLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGT--RGPIGPPGIPGFPGSKGDPGS 471
Score = 32.7 bits (73), Expect = 0.32
Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 32/168 (19%)
Query: 43 LGPAGARR--GHSPPTVAPAASAGSQEHPGAGGPLC------FPARSA---AWGPPARAS 91
+GPAGA+ GH+ A G+ PG GP+ FP + GPP A
Sbjct: 424 VGPAGAKGMPGHN----GEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAG 479
Query: 92 RAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151
A GP GPP PG + P P G P G AG R
Sbjct: 480 IATKGLNGPTGPP-GPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFI---KAGQR---- 531
Query: 152 RRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP 199
P GT L + ++ G +P S + A P G P P
Sbjct: 532 ----PSLSGTPLVSANQ-----GVTGMPVSAFTVILSKAYPAIGTPIP 570
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 52.4 bits (124), Expect = 4e-07
Identities = 73/251 (29%), Positives = 93/251 (37%), Gaps = 31/251 (12%)
Query: 10 RPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPAASAGSQEHP 69
R P + ++ + P+ ++ G F R +K R+ PP A A S
Sbjct: 188 REPGNPGKGNYWTLDPESADMFDNGSFLRRRKRF----KRQPLLPPNAAAAESL-LLRGA 242
Query: 70 GAGGPLCFPARSAAWGPPARASRAAGRRAGPAG-------PPCRAPGRGRAAATRRSPAP 122
GA G PA +AA PPA GP G PP P AAA + A
Sbjct: 243 GAAGGAGDPAAAAALFPPAPPPPPHAYGYGPYGCGYGLQLPPYAPPSALFAAAAAAAAAA 302
Query: 123 GTARGSPAGVERAGGATAA---SSAGTRSVP-ARRLPPPCGGTSLGAGSRALRRPGSAAL 178
SP GA A ++ G R P LP P ++ AG PG++AL
Sbjct: 303 AFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAGG-----PGASAL 357
Query: 179 PRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRG 238
RSP S + + G P A A AA AAAA +P P VA PA G
Sbjct: 358 ARSPFSIE--SIIGGSLGPAAAA--------AAAAQAAAAAQASPSPSPVAAPPAPGSSG 407
Query: 239 WVAAPDPGCTP 249
A P
Sbjct: 408 GGCAAQAAVGP 418
Score = 43.1 bits (100), Expect = 2e-04
Identities = 56/200 (28%), Positives = 72/200 (36%), Gaps = 16/200 (8%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-----ARASRAAGRRA 98
G A PP P A G G L P + PP A A+ AA
Sbjct: 249 GDPAAAAALFPPAPPPPPHAYGYGPYGCGYGLQLPP----YAPPSALFAAAAAAAAAAAF 304
Query: 99 GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGG--ATAASSAGTRSVPARRLP- 155
P PP P G AA R+ R P G G A+AA + G + R P
Sbjct: 305 HPHSPPPPPPPHGAAAELARTAFG--YRPHPLGAALPGPLPASAAKAGGPGASALARSPF 362
Query: 156 --PPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAA 213
G SLG + A +AA ++ S AA P PG+ G VG A A
Sbjct: 363 SIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAAL 422
Query: 214 PPAAAASVAPPPPAVAGAPA 233
+ A+ A +V+ + A
Sbjct: 423 TRSLVAAAAAAASSVSSSAA 442
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 52.0 bits (123), Expect = 5e-07
Identities = 66/226 (29%), Positives = 73/226 (32%), Gaps = 39/226 (17%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G PP PA + G Q G G P S GP GP GP
Sbjct: 201 GPMGPMGPRGPP--GPAGAPGPQGFQGNPGEPGEPGVSGPMGP-----------RGPPGP 247
Query: 104 PCRAPGRGRA-----AATRRSPAPGTARGSPA-----GVERAGGAT----AASSAGTRSV 149
P + G A A R P P ARG P GV+ G A AG V
Sbjct: 248 PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV 307
Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGF 209
P G+ G R L P + +R PGP P PG PVG
Sbjct: 308 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP----PG--PVG- 360
Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255
PA P A A RG A P PGT +P
Sbjct: 361 -----PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 401
Score = 52.0 bits (123), Expect = 5e-07
Identities = 65/228 (28%), Positives = 74/228 (32%), Gaps = 36/228 (15%)
Query: 44 GPAGARRGHSPP-------TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPA-RASRAAG 95
GP G R PP AG + PG G FP G R
Sbjct: 237 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD 296
Query: 96 RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155
G AG P G + SP P RG P R G A AA + G P P
Sbjct: 297 GAKGEAGAP-GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 355
Query: 156 P----PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGAPRP----GAPGTWP 206
P P GG A G R P ++ PG PG+P P G PGT
Sbjct: 356 PGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 414
Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENA 254
+ P A S P +AGAP P P PG + A
Sbjct: 415 I-------PGAKGSAG--APGIAGAP--------GFPGPRGPPGPQGA 445
Score = 48.1 bits (113), Expect = 7e-06
Identities = 67/228 (29%), Positives = 77/228 (33%), Gaps = 27/228 (11%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
G G PP PA AG + GA GP F GPP G + G G
Sbjct: 633 GKDGETGAAGPP--GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE-----GGKPGDQGV 685
Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
P A G PG RGSP G + GT P G
Sbjct: 686 PGEAGAPGLVGPRGERGFPG-ERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG 744
Query: 164 GAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAP-RPGAPG-TWPVGFAVAAPPAAAAS 220
G + + AA P R GP GAP + G G T P+G PP A +
Sbjct: 745 PPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG-----PPGPAGA 799
Query: 221 ------VAPPPPA-VAGAPAA-AFRGWVAAPDP---GCTPGTENAPAS 257
V PP PA AGA A RG P P PG + P +
Sbjct: 800 NGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 847
Score = 48.1 bits (113), Expect = 7e-06
Identities = 68/246 (27%), Positives = 80/246 (32%), Gaps = 42/246 (17%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR--ASRAAGRRA--G 99
GP+GA P +A G PG G FP G P + A A+G R G
Sbjct: 963 GPSGAEGPPGPQGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG 1020
Query: 100 PAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCG 159
P GPP G A R +PG A G P AG G P PP
Sbjct: 1021 PVGPPGLT---GPAGEPGREGSPG-ADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1076
Query: 160 GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR--------------------- 198
G + G + R A P PS + GP PR
Sbjct: 1077 GPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFT 1136
Query: 199 -----PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGA---PAAAFRGWVAAPDPGCTPG 250
PG PG P G A+ PA + PP V + A G + P P G
Sbjct: 1137 GLQGLPGPPG--PSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSG 1194
Query: 251 TENAPA 256
E PA
Sbjct: 1195 -ETGPA 1199
Score = 44.7 bits (104), Expect = 8e-05
Identities = 59/202 (29%), Positives = 70/202 (34%), Gaps = 22/202 (10%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GPAGA +P T + GS PG G FP GP + G G
Sbjct: 402 GPAGA--SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK--GQTGE 457
Query: 104 PCRAPGRGRAAATRRSPAPGTARGSP--AGVE-------RAGGATAASSAGTRSVPARRL 154
P A +G + P P +G+P AG E GG G R P R
Sbjct: 458 PGIAGFKGEQGP-KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRG 516
Query: 155 PPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGA----PRPGAPGTWPVGF 209
P G + G+ R P A P+ + PG PGA RPG G P G
Sbjct: 517 FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG--PQG- 573
Query: 210 AVAAPPAAAASVAPPPPAVAGA 231
V A P PP GA
Sbjct: 574 KVGPSGAPGEDGRPGPPGPQGA 595
Score = 44.7 bits (104), Expect = 8e-05
Identities = 62/220 (28%), Positives = 69/220 (31%), Gaps = 37/220 (16%)
Query: 44 GPAGARRGHSPPTVAPAASA-GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
G G+ PP AA G + GA G A GPP GPAG
Sbjct: 1035 GREGSPGADGPPGRDGAAGVKGDRGETGAVG------APGAPGPPG--------SPGPAG 1080
Query: 103 PPCRAPGRGRAAA--TRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR------- 153
P + RG A A P ARG G A G R + R
Sbjct: 1081 PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG 1140
Query: 154 LPPPCG-----GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVG 208
LP P G G S AG R P P + GP PR + T P G
Sbjct: 1141 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG 1200
Query: 209 FAVAAPPAAAASVAPPPPAVAGAPAAAFRGW---VAAPDP 245
PP PP P G +AF G PDP
Sbjct: 1201 -----PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1235
Score = 43.9 bits (102), Expect = 1e-04
Identities = 71/261 (27%), Positives = 87/261 (33%), Gaps = 57/261 (21%)
Query: 44 GPAGARR--GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAA------WGPPARASRAAG 95
GP G R G P AP G G GP+ P + A GPP A A
Sbjct: 762 GPKGDRGDVGEKGPEGAPGKDGGR----GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 817
Query: 96 RRA----GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151
R A G GPP A G A PG A+G + G A A G P
Sbjct: 818 RGAPGERGETGPPGPA---GFAGPPGADGQPG-AKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 152 RRLPPPCGGTSLGAGSRALRRPGSAALPRS-----PSSSRRWAAMPGPGAPR-----PGA 201
+ P G G++ PG+ P + P S PGP P GA
Sbjct: 874 PQGPTGVTGPKGARGAQG--PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGA 931
Query: 202 PG-TWPVGFA-------VAAPP---------AAAASVAPPPP-------AVAGAPA-AAF 236
G + P G A A PP + + PP P + G P
Sbjct: 932 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991
Query: 237 RGWVAAPDPGCTPGTENAPAS 257
RG+ P P PG + AP +
Sbjct: 992 RGFPGLPGPSGEPGKQGAPGA 1012
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 52.0 bits (123), Expect = 5e-07
Identities = 66/226 (29%), Positives = 73/226 (32%), Gaps = 39/226 (17%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GP G PP PA + G Q G G P S GP GP GP
Sbjct: 132 GPMGPMGPRGPP--GPAGAPGPQGFQGNPGEPGEPGVSGPMGP-----------RGPPGP 178
Query: 104 PCRAPGRGRA-----AATRRSPAPGTARGSPA-----GVERAGGAT----AASSAGTRSV 149
P + G A A R P P ARG P GV+ G A AG V
Sbjct: 179 PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV 238
Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGF 209
P G+ G R L P + +R PGP P PG PVG
Sbjct: 239 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP----PG--PVG- 291
Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255
PA P A A RG A P PGT +P
Sbjct: 292 -----PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 332
Score = 52.0 bits (123), Expect = 5e-07
Identities = 65/228 (28%), Positives = 74/228 (32%), Gaps = 36/228 (15%)
Query: 44 GPAGARRGHSPP-------TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPA-RASRAAG 95
GP G R PP AG + PG G FP G R
Sbjct: 168 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD 227
Query: 96 RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155
G AG P G + SP P RG P R G A AA + G P P
Sbjct: 228 GAKGEAGAP-GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 286
Query: 156 P----PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGAPRP----GAPGTWP 206
P P GG A G R P ++ PG PG+P P G PGT
Sbjct: 287 PGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 345
Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENA 254
+ P A S P +AGAP P P PG + A
Sbjct: 346 I-------PGAKGSAG--APGIAGAP--------GFPGPRGPPGPQGA 376
Score = 48.1 bits (113), Expect = 7e-06
Identities = 67/228 (29%), Positives = 77/228 (33%), Gaps = 27/228 (11%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
G G PP PA AG + GA GP F GPP G + G G
Sbjct: 564 GKDGETGAAGPP--GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE-----GGKPGDQGV 616
Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
P A G PG RGSP G + GT P G
Sbjct: 617 PGEAGAPGLVGPRGERGFPG-ERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG 675
Query: 164 GAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAP-RPGAPG-TWPVGFAVAAPPAAAAS 220
G + + AA P R GP GAP + G G T P+G PP A +
Sbjct: 676 PPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG-----PPGPAGA 730
Query: 221 ------VAPPPPA-VAGAPAA-AFRGWVAAPDP---GCTPGTENAPAS 257
V PP PA AGA A RG P P PG + P +
Sbjct: 731 NGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 778
Score = 48.1 bits (113), Expect = 7e-06
Identities = 68/246 (27%), Positives = 80/246 (32%), Gaps = 42/246 (17%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR--ASRAAGRRA--G 99
GP+GA P +A G PG G FP G P + A A+G R G
Sbjct: 894 GPSGAEGPPGPQGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG 951
Query: 100 PAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCG 159
P GPP G A R +PG A G P AG G P PP
Sbjct: 952 PVGPPGLT---GPAGEPGREGSPG-ADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1007
Query: 160 GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR--------------------- 198
G + G + R A P PS + GP PR
Sbjct: 1008 GPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFT 1067
Query: 199 -----PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGA---PAAAFRGWVAAPDPGCTPG 250
PG PG P G A+ PA + PP V + A G + P P G
Sbjct: 1068 GLQGLPGPPG--PSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSG 1125
Query: 251 TENAPA 256
E PA
Sbjct: 1126 -ETGPA 1130
Score = 44.7 bits (104), Expect = 8e-05
Identities = 59/202 (29%), Positives = 70/202 (34%), Gaps = 22/202 (10%)
Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
GPAGA +P T + GS PG G FP GP + G G
Sbjct: 333 GPAGA--SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK--GQTGE 388
Query: 104 PCRAPGRGRAAATRRSPAPGTARGSP--AGVE-------RAGGATAASSAGTRSVPARRL 154
P A +G + P P +G+P AG E GG G R P R
Sbjct: 389 PGIAGFKGEQGP-KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRG 447
Query: 155 PPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGA----PRPGAPGTWPVGF 209
P G + G+ R P A P+ + PG PGA RPG G P G
Sbjct: 448 FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG--PQG- 504
Query: 210 AVAAPPAAAASVAPPPPAVAGA 231
V A P PP GA
Sbjct: 505 KVGPSGAPGEDGRPGPPGPQGA 526
Score = 44.7 bits (104), Expect = 8e-05
Identities = 62/220 (28%), Positives = 69/220 (31%), Gaps = 37/220 (16%)
Query: 44 GPAGARRGHSPPTVAPAASA-GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
G G+ PP AA G + GA G A GPP GPAG
Sbjct: 966 GREGSPGADGPPGRDGAAGVKGDRGETGAVG------APGAPGPPG--------SPGPAG 1011
Query: 103 PPCRAPGRGRAAA--TRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR------- 153
P + RG A A P ARG G A G R + R
Sbjct: 1012 PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG 1071
Query: 154 LPPPCG-----GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVG 208
LP P G G S AG R P P + GP PR + T P G
Sbjct: 1072 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG 1131
Query: 209 FAVAAPPAAAASVAPPPPAVAGAPAAAFRGW---VAAPDP 245
PP PP P G +AF G PDP
Sbjct: 1132 -----PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1166
Score = 43.9 bits (102), Expect = 1e-04
Identities = 71/261 (27%), Positives = 87/261 (33%), Gaps = 57/261 (21%)
Query: 44 GPAGARR--GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAA------WGPPARASRAAG 95
GP G R G P AP G G GP+ P + A GPP A A
Sbjct: 693 GPKGDRGDVGEKGPEGAPGKDGGR----GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 748
Query: 96 RRA----GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151
R A G GPP A G A PG A+G + G A A G P
Sbjct: 749 RGAPGERGETGPPGPA---GFAGPPGADGQPG-AKGEQGEAGQKGDAGAPGPQGPSGAPG 804
Query: 152 RRLPPPCGGTSLGAGSRALRRPGSAALPRS-----PSSSRRWAAMPGPGAPR-----PGA 201
+ P G G++ PG+ P + P S PGP P GA
Sbjct: 805 PQGPTGVTGPKGARGAQG--PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGA 862
Query: 202 PG-TWPVGFA-------VAAPP---------AAAASVAPPPP-------AVAGAPA-AAF 236
G + P G A A PP + + PP P + G P
Sbjct: 863 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 922
Query: 237 RGWVAAPDPGCTPGTENAPAS 257
RG+ P P PG + AP +
Sbjct: 923 RGFPGLPGPSGEPGKQGAPGA 943
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 52.0 bits (123), Expect = 5e-07
Identities = 60/182 (32%), Positives = 64/182 (35%), Gaps = 28/182 (15%)
Query: 47 GARRGHSPPTVAPA-----ASAGSQEHPGAGGPLCFPARS--AAWGPPARASRAAGRRAG 99
GARRG P AP + GS P P C P R AA P R R R
Sbjct: 46 GARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRR 105
Query: 100 PAGPPCR----------APGRGRAAATRRSPAPGTAR----GSPAGVERAGGATAASSAG 145
P G P APGR A A APG AR G G GG + G
Sbjct: 106 PGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGG 165
Query: 146 TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALP----RSPSSSRRW--AAMPGPGAPRP 199
T P R P G RA G+AA P P S A GP +PR
Sbjct: 166 TVG-PGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRD 224
Query: 200 GA 201
GA
Sbjct: 225 GA 226
Score = 34.3 bits (77), Expect = 0.11
Identities = 41/132 (31%), Positives = 49/132 (37%), Gaps = 36/132 (27%)
Query: 48 ARRGHSPPTVAPA---ASAGSQEHPGA-----GGPLCFPA----RSAAWGPPARASRAAG 95
A G + P VA A +G + HPG GG P +A G P R RAA
Sbjct: 131 ALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAE 190
Query: 96 RRAGPAGPPCRAPG-----RGRAAATR--RSPAPGTARGS---PAGVERAGGATAASSAG 145
R A PP G G A T+ +SP G G+ P V +GG
Sbjct: 191 TRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGG-------- 242
Query: 146 TRSVPARRLPPP 157
R LPPP
Sbjct: 243 ------RPLPPP 248
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 52.0 bits (123), Expect = 5e-07
Identities = 63/219 (28%), Positives = 78/219 (35%), Gaps = 44/219 (20%)
Query: 51 GHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
G PP P G H P G +P A PP S+ + +AGP G
Sbjct: 508 GPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPH--SQVSYSQAGPNG 565
Query: 103 PPCRA-------------------PGRGRAAATRRSPAPGTARGSPAGVERAGGATAASS 143
PP + P +G A P T S A + A+S
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSP 625
Query: 144 AG--TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSR-------RWAAMP-G 193
AG T S P PPP G + G+ P P SP S R R + P G
Sbjct: 626 AGYKTASPPG---PPPYGKRAPSPGAYKTATPPGYK-PGSPPSFRTGTPPGYRGTSPPAG 681
Query: 194 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232
PG +PG+P P G A P+ S+ PPP A A P
Sbjct: 682 PGTFKPGSPTVGP-GPLPPAGPSGLPSLPPPPAAPASGP 719
Score = 43.5 bits (101), Expect = 2e-04
Identities = 47/195 (24%), Positives = 66/195 (33%), Gaps = 22/195 (11%)
Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
+PPT P G P A P FP + PP A P PG G
Sbjct: 270 APPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASP-------PGLG- 321
Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
P PG A + GG G P+ PP S A + +R
Sbjct: 322 -----AQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPP---ASSSAPAPPMRF 373
Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPRPGAPG--TWPVGFAVAAPPAAAASVAPPPPAVAG 230
P S++ S ++S ++ +P P + ++P F PP + SV+ PP
Sbjct: 374 PYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSF----PPPTSLSVSNQPPKYTQ 429
Query: 231 APAAAFRGWVAAPDP 245
+ W P P
Sbjct: 430 PSLPSQAVWSQGPPP 444
Score = 31.6 bits (70), Expect = 0.71
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 15/113 (13%)
Query: 154 LPPPCGGTSLG-AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWP------ 206
LPPP S AG S+ S S + P P GAP +P
Sbjct: 549 LPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVT 608
Query: 207 --------VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251
V VA+ PA + +PP P G A + + A PG PG+
Sbjct: 609 TSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGS 661
Score = 30.0 bits (66), Expect = 2.1
Identities = 42/158 (26%), Positives = 56/158 (35%), Gaps = 34/158 (21%)
Query: 128 SPAGVERAGGATAASSAGTRSVPARRL-PPPCGGTSLGAGSRALRRPGSAA--------- 177
SP VE + SS+G PAR PPP S R+P ++
Sbjct: 137 SPGSVEN----DSDSSSGLSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT 192
Query: 178 ---LPRSPSSSRRWAAMPGPGAPRPGA-PGTWPVGFAVAAPP------AAAASVA----- 222
P P +SR + A PG P P PG G ++ PP AA+SV
Sbjct: 193 GYHAPMEPPTSRMFQAPPGAPPPHPQLYPG--GTGGVLSGPPMGPKGGGAASSVGGPNGG 250
Query: 223 ---PPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
PPP ++ G P G N P++
Sbjct: 251 KQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSA 288
Score = 29.6 bits (65), Expect = 2.7
Identities = 56/219 (25%), Positives = 71/219 (32%), Gaps = 51/219 (23%)
Query: 43 LGPAGARRGHSPPTVAPAAS----------AGSQEHPGAGGPLCFPARSAAWGPPARASR 92
L AR H PP P+ A + HP A PP
Sbjct: 151 LSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT----GYHAPMEPPTSRMF 206
Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152
A A P P G G G G P G + GG A+S G +
Sbjct: 207 QAPPGAPPPHPQLYPGGTG-----------GVLSGPPMGPK--GGGAASSVGGPNG--GK 251
Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVA 212
+ PPP S+ + S A P P ++ P G P AP P F
Sbjct: 252 QHPPPTTPISVSSSG------ASGAPPTKPPTT------PVGGGNLPSAPP--PANF--- 294
Query: 213 APPAAAASVAPPPPAV--AGAPAAAFRGWVAAPDPGCTP 249
P ++ PPPPA+ +A+ G A P PG P
Sbjct: 295 --PHVTPNL-PPPPALRPLNNASASPPGLGAQPLPGHLP 330
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 52.0 bits (123), Expect = 5e-07
Identities = 63/219 (28%), Positives = 78/219 (35%), Gaps = 44/219 (20%)
Query: 51 GHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
G PP P G H P G +P A PP S+ + +AGP G
Sbjct: 508 GPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPH--SQVSYSQAGPNG 565
Query: 103 PPCRA-------------------PGRGRAAATRRSPAPGTARGSPAGVERAGGATAASS 143
PP + P +G A P T S A + A+S
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSP 625
Query: 144 AG--TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSR-------RWAAMP-G 193
AG T S P PPP G + G+ P P SP S R R + P G
Sbjct: 626 AGYKTASPPG---PPPYGKRAPSPGAYKTATPPGYK-PGSPPSFRTGTPPGYRGTSPPAG 681
Query: 194 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232
PG +PG+P P G A P+ S+ PPP A A P
Sbjct: 682 PGTFKPGSPTVGP-GPLPPAGPSGLPSLPPPPAAPASGP 719
Score = 43.5 bits (101), Expect = 2e-04
Identities = 47/195 (24%), Positives = 66/195 (33%), Gaps = 22/195 (11%)
Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
+PPT P G P A P FP + PP A P PG G
Sbjct: 270 APPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASP-------PGLG- 321
Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
P PG A + GG G P+ PP S A + +R
Sbjct: 322 -----AQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPP---ASSSAPAPPMRF 373
Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPRPGAPG--TWPVGFAVAAPPAAAASVAPPPPAVAG 230
P S++ S ++S ++ +P P + ++P F PP + SV+ PP
Sbjct: 374 PYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSF----PPPTSLSVSNQPPKYTQ 429
Query: 231 APAAAFRGWVAAPDP 245
+ W P P
Sbjct: 430 PSLPSQAVWSQGPPP 444
Score = 31.6 bits (70), Expect = 0.71
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 15/113 (13%)
Query: 154 LPPPCGGTSLG-AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWP------ 206
LPPP S AG S+ S S + P P GAP +P
Sbjct: 549 LPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVT 608
Query: 207 --------VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251
V VA+ PA + +PP P G A + + A PG PG+
Sbjct: 609 TSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGS 661
Score = 30.0 bits (66), Expect = 2.1
Identities = 42/158 (26%), Positives = 56/158 (35%), Gaps = 34/158 (21%)
Query: 128 SPAGVERAGGATAASSAGTRSVPARRL-PPPCGGTSLGAGSRALRRPGSAA--------- 177
SP VE + SS+G PAR PPP S R+P ++
Sbjct: 137 SPGSVEN----DSDSSSGLSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT 192
Query: 178 ---LPRSPSSSRRWAAMPGPGAPRPGA-PGTWPVGFAVAAPP------AAAASVA----- 222
P P +SR + A PG P P PG G ++ PP AA+SV
Sbjct: 193 GYHAPMEPPTSRMFQAPPGAPPPHPQLYPG--GTGGVLSGPPMGPKGGGAASSVGGPNGG 250
Query: 223 ---PPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
PPP ++ G P G N P++
Sbjct: 251 KQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSA 288
Score = 29.6 bits (65), Expect = 2.7
Identities = 56/219 (25%), Positives = 71/219 (32%), Gaps = 51/219 (23%)
Query: 43 LGPAGARRGHSPPTVAPAAS----------AGSQEHPGAGGPLCFPARSAAWGPPARASR 92
L AR H PP P+ A + HP A PP
Sbjct: 151 LSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT----GYHAPMEPPTSRMF 206
Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152
A A P P G G G G P G + GG A+S G +
Sbjct: 207 QAPPGAPPPHPQLYPGGTG-----------GVLSGPPMGPK--GGGAASSVGGPNG--GK 251
Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVA 212
+ PPP S+ + S A P P ++ P G P AP P F
Sbjct: 252 QHPPPTTPISVSSSG------ASGAPPTKPPTT------PVGGGNLPSAPP--PANF--- 294
Query: 213 APPAAAASVAPPPPAV--AGAPAAAFRGWVAAPDPGCTP 249
P ++ PPPPA+ +A+ G A P PG P
Sbjct: 295 --PHVTPNL-PPPPALRPLNNASASPPGLGAQPLPGHLP 330
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 52.0 bits (123), Expect = 5e-07
Identities = 56/232 (24%), Positives = 70/232 (30%), Gaps = 38/232 (16%)
Query: 19 DFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFP 78
DFR+ P + Q +G +GP + G PP P Q+ P P P
Sbjct: 30 DFRSPPPGMGLNQNRG-------PMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQP 82
Query: 79 ARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGA 138
PP + P + ++ P P P + G A
Sbjct: 83 ------------------------PPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPA 118
Query: 139 TAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR 198
SA S A PP G G+G PG P P+ + P P P
Sbjct: 119 PGVGSAPPASSSAPPATPPTSGAPPGSG------PGPTPTP-PPAVTSAPPGAPPPTPPS 171
Query: 199 PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250
G P T P PPAA P P G P PG PG
Sbjct: 172 SGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPG 223
Score = 41.6 bits (96), Expect = 7e-04
Identities = 38/130 (29%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 43 LGPAGARRGHSPPTVAPAASAGSQEHPGAG-GPLCFP---ARSAAWGPPARASRAAG--- 95
+G A +PP P + A PG+G GP P SA G P ++G
Sbjct: 121 VGSAPPASSSAPPATPPTSGAP----PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPT 176
Query: 96 ---RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGS--PAGVERAGGATAASSAGTRSVP 150
+ GP PP PG G ++ P PG +G P G + GG ++ G P
Sbjct: 177 TPPQAGGPPPPPAAVPGPG--PGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPP 234
Query: 151 ARRLPPPCGG 160
R P GG
Sbjct: 235 HRGGGEPRGG 244
Score = 37.0 bits (84), Expect = 0.017
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 179 PRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRG 238
P P S + GPG P PG V + P A++S P P +GAP + G
Sbjct: 100 PPPPQDSSKPVVAQGPG-PAPG----------VGSAPPASSSAPPATPPTSGAPPGSGPG 148
Query: 239 WVAAPDPGCTPGTENAP 255
P P T AP
Sbjct: 149 PTPTPPPAVTSAPPGAP 165
Score = 29.3 bits (64), Expect = 3.5
Identities = 44/169 (26%), Positives = 53/169 (31%), Gaps = 29/169 (17%)
Query: 92 RAAGRRAGPAGPPCRAPGRGRAAATR-RSPAPGTARGSPAGVERAGGATAASSAGTRSVP 150
R R G G R G GR RSP PG G G +S P
Sbjct: 5 RFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPG--------QSGP 56
Query: 151 ARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGA----PRPGAPGTWP 206
+PPP + ++P P + P P P P + P
Sbjct: 57 KPPIPPP-------PPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKP 109
Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255
V VA P A V PPA + AP A P G PG+ P
Sbjct: 110 V---VAQGPGPAPGVGSAPPASSSAPPA------TPPTSGAPPGSGPGP 149
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 52.0 bits (123), Expect = 5e-07
Identities = 63/232 (27%), Positives = 83/232 (35%), Gaps = 24/232 (10%)
Query: 45 PAGARRGHSPPTVAPAASAGSQEH------PGAGGPLCFPARSAAWGPPA-RASRAAGRR 97
P RG + PAASA + + P A +C + AWG P RA +
Sbjct: 34 PGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTIC--SLHQAWGGPGCRAQKGIPAA 91
Query: 98 AGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPP 157
P P AP G A P PG+ G G + A G S P + +P P
Sbjct: 92 LSPGPGPIPAPIPGPAQIP--GPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQ-IPGP 148
Query: 158 CGGTSLGAGSRALRRPGSAALPRS-----PSSSRRWAAMPGP-GAPRPG---APGTWPVG 208
G G S PG + P S P +PGP P PG P P+
Sbjct: 149 FRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIP 208
Query: 209 FAVAAP---PAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
++ P P P P ++G G ++ P+PG PG P S
Sbjct: 209 GPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
Score = 36.2 bits (82), Expect = 0.029
Identities = 58/205 (28%), Positives = 70/205 (34%), Gaps = 26/205 (12%)
Query: 47 GARRGHSP-PTVAPAASAGSQEHPGAG---GPLCFPARSAAWGPPARASRAAGRRAGPAG 102
G RG P P PA G P +G GP+ P GP +G GP
Sbjct: 147 GPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGP------ISGPIPGPIS 200
Query: 103 PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRL-PPPCGGT 161
P P G + P PG G G G G S P L P P G
Sbjct: 201 VPIPGPIPGPISGPISGPNPGPIPGPIPGP--ISGPNPGPIPGPISGPNPGLIPGPIPGP 258
Query: 162 SLGAGSRALRRPGSAALPR-----------SPSSSRRWAAMPGPGAPRPGAPGTWPVGFA 210
G G P A +P SP R ++PG AP G PG+ P +
Sbjct: 259 ISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGL-APILG-PGSGPGSGS 316
Query: 211 VAAPPAAAASVAPPPPAVAGAPAAA 235
V AP S+ P P +P A+
Sbjct: 317 VPAPIPGPGSLPAPAPLWPQSPDAS 341
Score = 33.1 bits (74), Expect = 0.24
Identities = 48/148 (32%), Positives = 58/148 (39%), Gaps = 21/148 (14%)
Query: 44 GP-AGARRGHSP-PTVAPAASAGSQEHPGA-GGPLCFPARSAAWGPPARASRAAGRRAGP 100
GP +G G +P P P S +PG GP+ P GP G GP
Sbjct: 209 GPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGP 268
Query: 101 AGPPCRAPGRGRAAATRRSPAPGTAR--GSPAGVERAGGATAASSAGTRSVPARRLPPPC 158
P + PG GR +PG R GS G+ G S G+ SVPA P P
Sbjct: 269 IPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILG--PGSGPGSGSVPA---PIP- 322
Query: 159 GGTSLGAGSRALRRPGSAAL-PRSPSSS 185
G GS P A L P+SP +S
Sbjct: 323 -----GPGS----LPAPAPLWPQSPDAS 341
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,983,635
Number of Sequences: 37866
Number of extensions: 1196600
Number of successful extensions: 17567
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 2164
Number of HSP's that attempted gapping in prelim test: 8060
Number of HSP's gapped (non-prelim): 7629
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.