BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] (257 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 535 e-152 gi|239748402 PREDICTED: hypothetical protein [Homo sapiens] 147 9e-36 gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo ... 147 9e-36 gi|110832843 TBP-associated factor 4 [Homo sapiens] 64 1e-10 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 61 8e-10 gi|134142824 forkhead box D2 [Homo sapiens] 58 7e-09 gi|163965366 nascent polypeptide-associated complex alpha subuni... 58 7e-09 gi|117938759 GNAS complex locus XLas [Homo sapiens] 57 2e-08 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 57 2e-08 gi|122937321 UNC homeobox [Homo sapiens] 57 2e-08 gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 56 3e-08 gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 56 4e-08 gi|18641360 collectin sub-family member 12 [Homo sapiens] 55 6e-08 gi|48762934 alpha 2 type I collagen [Homo sapiens] 55 8e-08 gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 54 1e-07 gi|19924097 synapsin I isoform Ib [Homo sapiens] 53 2e-07 gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 53 3e-07 gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 53 3e-07 gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 52 4e-07 gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 52 4e-07 gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 52 4e-07 gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 52 4e-07 gi|4758392 forkhead box D1 [Homo sapiens] 52 4e-07 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 52 5e-07 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 52 5e-07 gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 52 5e-07 gi|55750053 atrophin-1 [Homo sapiens] 52 5e-07 gi|55750041 atrophin-1 [Homo sapiens] 52 5e-07 gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 52 5e-07 gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 52 5e-07 >gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] Length = 257 Score = 535 bits (1377), Expect = e-152 Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MAYSRQRKIRPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPA 60 MAYSRQRKIRPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPA Sbjct: 1 MAYSRQRKIRPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPA 60 Query: 61 ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP 120 ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP Sbjct: 61 ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP 120 Query: 121 APGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPR 180 APGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPR Sbjct: 121 APGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPR 180 Query: 181 SPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240 SPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV Sbjct: 181 SPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240 Query: 241 AAPDPGCTPGTENAPAS 257 AAPDPGCTPGTENAPAS Sbjct: 241 AAPDPGCTPGTENAPAS 257 >gi|239748402 PREDICTED: hypothetical protein [Homo sapiens] Length = 67 Score = 147 bits (371), Expect = 9e-36 Identities = 67/67 (100%), Positives = 67/67 (100%) Query: 191 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG Sbjct: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60 Query: 251 TENAPAS 257 TENAPAS Sbjct: 61 TENAPAS 67 Score = 28.9 bits (63), Expect = 4.6 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 69 PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGT 124 P G P +P A PPA A+ A AG P A RG AA PGT Sbjct: 7 PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGT 61 >gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo sapiens] Length = 67 Score = 147 bits (371), Expect = 9e-36 Identities = 67/67 (100%), Positives = 67/67 (100%) Query: 191 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG Sbjct: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60 Query: 251 TENAPAS 257 TENAPAS Sbjct: 61 TENAPAS 67 Score = 28.9 bits (63), Expect = 4.6 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 69 PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGT 124 P G P +P A PPA A+ A AG P A RG AA PGT Sbjct: 7 PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGT 61 >gi|110832843 TBP-associated factor 4 [Homo sapiens] Length = 1085 Score = 64.3 bits (155), Expect = 1e-10 Identities = 80/229 (34%), Positives = 92/229 (40%), Gaps = 36/229 (15%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GPA G P AP + PG GGP GPP + R AGPA P Sbjct: 74 GPAAPAEG--APGAAPEPPPAGRARPGGGGP-------QRPGPP--SPRRPLVPAGPAPP 122 Query: 104 PC--RAPGRGRAAATRRSPAPGTARG----SPAG-VERAGGATAASSAGTRSVPARRL-P 155 R P G A + PA +PAG + AG A A+ AG P P Sbjct: 123 AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGP 182 Query: 156 PPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAM--PGPGA----PRPGAPGT---WP 206 P G G G+ A GSAAL S ++ ++ GP A P+P APGT P Sbjct: 183 GPGPGKPAGPGA-AQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTP 241 Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255 AAPPA AA P PA A APAA A P P P T P Sbjct: 242 PFVGAAAPPAPAAPSPPAAPAPA-APAA------APPPPPPAPATLARP 283 Score = 61.6 bits (148), Expect = 6e-10 Identities = 73/242 (30%), Positives = 89/242 (36%), Gaps = 54/242 (22%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP RR P AP A+ G+ G C P PA A+ AAG PAGP Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGS-CAPV-------PAAAAVAAGPEPAPAGP 157 Query: 104 PCRAPGRGRAAATRRS---------PAPGTARGSPAG---VERAGGATAASSAGTRSVPA 151 A G AA R+ P PG G PAG + G+ A ++ + PA Sbjct: 158 ---AKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPA 214 Query: 152 RRL------------PPPCGGTSLG----AGSRALRRPGSAALPRSPSSSRRWAAMPGPG 195 L P GT + G+ A P + + P +P+ + AA P P Sbjct: 215 VSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274 Query: 196 ------APRPGAPGTWPVGFAVAAPPAAA-----ASVAPPPPAVAGAPAAAFRGWVAAPD 244 A PG P P PPAAA A AP P AG PA G P Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA----GVSGQPG 330 Query: 245 PG 246 PG Sbjct: 331 PG 332 Score = 59.7 bits (143), Expect = 2e-09 Identities = 60/207 (28%), Positives = 78/207 (37%), Gaps = 28/207 (13%) Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112 +PP V AA P A P PA +A P A A P G P P Sbjct: 240 TPPFVGAAAPPA----PAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAP 295 Query: 113 A----------AATRRSPAPGTARGSPAGVE---RAGGATAASSAGTRSVPARRL---PP 156 A + +PAP A G PAGV G A AA + G ++ +R+ P Sbjct: 296 AVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAP 355 Query: 157 PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPA 216 P T +G + +A++ P+ A+P P A P APGT P G A A Sbjct: 356 PAAQTLAASGPAST----AASMVIGPTMQ---GALPSPAAVPPPAPGT-PTGLPKGAAGA 407 Query: 217 AAASVAPPPPAVAGAPAAAFRGWVAAP 243 S++ P A A V AP Sbjct: 408 VTQSLSRTPTATTSGIRATLTPTVLAP 434 Score = 49.3 bits (116), Expect = 3e-06 Identities = 55/173 (31%), Positives = 59/173 (34%), Gaps = 18/173 (10%) Query: 90 ASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSV 149 AS A P P RA G GSPAG AG A A A Sbjct: 35 ASAAHHHHLAPRTPEVRAAAAGALGNH-------VVSGSPAGAAGAGPAAPAEGAPG--- 84 Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTW---P 206 A PPP G G G P S P P+ AA P P G+ G+ P Sbjct: 85 -AAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRP--PPEGSAGSCAPVP 141 Query: 207 VGFAVAA--PPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 AVAA PA A P PA A A G P PG PG P + Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGA 194 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 61.2 bits (147), Expect = 8e-10 Identities = 68/218 (31%), Positives = 83/218 (38%), Gaps = 17/218 (7%) Query: 44 GPAGARRGHSPP----TVAPAASAGSQEHPGAGGPLCFPA-RSAAWGPPARASRAAGRRA 98 GPAG R + P A + G+ GA G P R AA P + R Sbjct: 692 GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPK 751 Query: 99 GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPP-P 157 G G P + RG T PG A G+P +G + A G R P R P P Sbjct: 752 GADGSPGKDGVRG---LTGPIGPPGPA-GAPGDKGESGPSGPAGPTGARGAPGDRGEPGP 807 Query: 158 CGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAA 217 G A +PG+ P + ++ A PGP P G PG P+G V AP A Sbjct: 808 PGPAGFAGPPGADGQPGAKGEP-GDAGAKGDAGPPGPAGPA-GPPG--PIG-NVGAPGAK 862 Query: 218 AASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255 A + PP G P AA G V P P G P Sbjct: 863 GARGSAGPPGATGFPGAA--GRVGPPGPSGNAGPPGPP 898 Score = 55.8 bits (133), Expect = 4e-08 Identities = 70/218 (32%), Positives = 78/218 (35%), Gaps = 47/218 (21%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRA---------- 93 G GAR PP G+ PGA G + P S GPP A Sbjct: 860 GAKGARGSAGPP--------GATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG 911 Query: 94 ----AGR--RAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATA-ASSAGT 146 AGR GP GPP A +G A + APGT P G+ G G Sbjct: 912 ETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTP--GPQGIAGQRGVVGLPGQRGE 969 Query: 147 RSVPARRLPPPCG-----GTSLGAGSRALRRP-GSAALPRSPSSSRRWAAMPGPGAP-RP 199 R P LP P G G S +G R P G L P S R A G+P R Sbjct: 970 RGFPG--LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRD 1027 Query: 200 GAPG-------TWPVGFAVAAPPAAAASVAPPPPAVAG 230 G+PG T P G P A A AP P AG Sbjct: 1028 GSPGAKGDRGETGPAG----PPGAPGAPGAPGPVGPAG 1061 Score = 54.7 bits (130), Expect = 8e-08 Identities = 69/234 (29%), Positives = 80/234 (34%), Gaps = 49/234 (20%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAA-WGPPARASRAAGRRAGPAG 102 GP G + PP PA G + G GP P GP +R A AGP G Sbjct: 452 GPVGVQ---GPP--GPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKG 506 Query: 103 PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTS 162 P A R SP P +GSP R G A + G P P P G T Sbjct: 507 P----------AGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGS--PGPDGKTG 554 Query: 163 LGAGSRALRRPGSAALPRSPSSSRRWAAM---PGP----GAP----RPGAPGTWPVGFAV 211 + RPG P P +R A + PGP G P G PG P Sbjct: 555 PPGPAGQDGRPG----PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP-PGAVGP 609 Query: 212 AAPPAAAASVAPPPPA----------VAGAPAAAFRGWVAAPDPGCTPGTENAP 255 A A + PP PA AG+P G+ P P PG P Sbjct: 610 AGKDGEAGAQGPPGPAGPAGERGEQGPAGSP-----GFQGLPGPAGPPGEAGKP 658 Score = 48.9 bits (115), Expect = 4e-06 Identities = 68/228 (29%), Positives = 79/228 (34%), Gaps = 33/228 (14%) Query: 54 PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRA 113 P + P+ G PGA GP F G P AS G R GP GPP + G A Sbjct: 178 PGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPG-ASGPMGPR-GPPGPPGKNGDDGEA 235 Query: 114 A-----ATRRSPAPGTARGSP--------------AGVERA-GGATAASSAGTRSVPARR 153 R P P ARG P +G++ A G A A G P Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN 295 Query: 154 LPPPCGGTSLGAGSRALRRPGS--AALPRSPSSSRRWAAMPGPGAPR--PGAPGTWPVGF 209 P G G R RPG+ A R + A PGP P PG PG VG Sbjct: 296 GAPGQMGPRGLPGERG--RPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGA--VGA 351 Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 A P + P V G P G A P PG + P + Sbjct: 352 KGEAGPQGPRG-SEGPQGVRGEPGPP--GPAGAAGPAGNPGADGQPGA 396 Score = 48.1 bits (113), Expect = 7e-06 Identities = 79/290 (27%), Positives = 86/290 (29%), Gaps = 93/290 (32%) Query: 44 GPAGARRGHSPP-TVAPAAS---AGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAG 99 G AG R PP V PA AG+Q PG GP G P G Sbjct: 593 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP-----G 647 Query: 100 PAGPPCRA--PGRGRAAATRRSPAPGTARG--------------SPAGVERAGGATAASS 143 PAGPP A PG +P P ARG PAG A GA Sbjct: 648 PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDG 707 Query: 144 A----------------GTRSVPARR----LPPPCG-----------GTSLGAGSRALRR 172 A G + +P R LP P G G+ G R L Sbjct: 708 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTG 767 Query: 173 PGSAALPRSPSSSRRWAAMPGPGAP-----------RPGAPGTWPVGFA----------- 210 P P + + GP P PG PG P GFA Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG--PAGFAGPPGADGQPGA 825 Query: 211 -----------VAAPPAAAASVAPPPP-AVAGAPAAAFRGWVAAPDPGCT 248 A PP A PP P GAP A A P PG T Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGP-PGAT 874 Score = 47.8 bits (112), Expect = 1e-05 Identities = 66/238 (27%), Positives = 77/238 (32%), Gaps = 43/238 (18%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR-----------ASR 92 G GA+ P P S G Q G GP P + A GP A+ Sbjct: 347 GAVGAKGEAGPQ--GPRGSEGPQGVRGEPGP---PGPAGAAGPAGNPGADGQPGAKGANG 401 Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSP--------APGT-----ARGSPAGVERAGGAT 139 A G P P R P + P APG+ A+G P V G Sbjct: 402 APGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG 461 Query: 140 AASSAGTRSVPARRLPPPCG-----GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP 194 A G R AR P P G G G GSR A P+ P+ R PGP Sbjct: 462 PAGEEGKRG--ARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER---GSPGP 516 Query: 195 GAPR--PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250 P+ PG G A + +P P G P A G P P PG Sbjct: 517 AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPA--GQDGRPGPPGPPG 572 Score = 45.1 bits (105), Expect = 6e-05 Identities = 66/226 (29%), Positives = 72/226 (31%), Gaps = 31/226 (13%) Query: 44 GPAGARRGHSPPTV-APAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAA--GRR--- 97 GP G R PP AG PG GP P A G P A G R Sbjct: 215 GPMGPRGPPGPPGKNGDDGEAGKPGRPGERGP---PGPQGARGLPGTAGLPGMKGHRGFS 271 Query: 98 --------AGPAGPPCR--APGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTR 147 AGPAGP +PG A RG P AG + G Sbjct: 272 GLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAA 331 Query: 148 SVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAPRP-GAPGTW 205 P P G G++ P P R PGP GA P G PG Sbjct: 332 GPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPG-- 389 Query: 206 PVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPG 250 A P A A+ A P +AGAP RG PG PG Sbjct: 390 ----ADGQPGAKGANGA---PGIAGAPGFPGARGPSGPQGPGGPPG 428 Score = 43.1 bits (100), Expect = 2e-04 Identities = 57/194 (29%), Positives = 68/194 (35%), Gaps = 30/194 (15%) Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGR----RAGPAGPPCRAP 108 SP + G + G GP P A GP A ++ R AGPAGP Sbjct: 1023 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVG 1082 Query: 109 GRGRAAAT-RRSPAPGTARGSPAGVE-RAGGATAASSAGTRSVPARRLPPPCGGTSLGAG 166 RG A R T G++ G + G P + P G S AG Sbjct: 1083 ARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP---SGASGPAG 1139 Query: 167 SRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG----TWPVGFAVAAPPAAAASVA 222 R PGSA P + +PGP P PG G PVG PP Sbjct: 1140 PRG--PPGSAGAPGKDGLN----GLPGPIGP-PGPRGRTGDAGPVG-----PPG-----P 1182 Query: 223 PPPPAVAGAPAAAF 236 P PP G P+A F Sbjct: 1183 PGPPGPPGPPSAGF 1196 Score = 38.5 bits (88), Expect = 0.006 Identities = 51/174 (29%), Positives = 56/174 (32%), Gaps = 28/174 (16%) Query: 44 GPAGARRGHSPP-TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102 GP GA P V PA +G + G GP A GP AGP G Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGP-----------AGPQG 1091 Query: 103 PPCRAPGRGRAAATRRSPAPGTA--RG-----SPAGVERAGGATAASSAGTRSVPARRLP 155 P RG T G RG P G + G S A + P R P Sbjct: 1092 P------RGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGP--RGP 1143 Query: 156 PPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGF 209 P G G L P PR + PGP P PG PG GF Sbjct: 1144 PGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP-PGPPGPPSAGF 1196 >gi|134142824 forkhead box D2 [Homo sapiens] Length = 495 Score = 58.2 bits (139), Expect = 7e-09 Identities = 66/214 (30%), Positives = 81/214 (37%), Gaps = 36/214 (16%) Query: 54 PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPA-GPPCRAPGRGR 112 P AP HP P F +AA P + S GR A P GPP + G Sbjct: 275 PAYGAPPPGPAPHPHPH---PHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGA 331 Query: 113 AAATRRSPAPGTARG-SPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALR 171 +A +PA G+ G PAG+ GA + ++ A L PP GT+ G + LR Sbjct: 332 GSAPAPAPASGSGPGPGPAGLPAFLGAELGCA---KAFYAASLSPPAAGTAAGLPTALLR 388 Query: 172 R-----------PGSAALPRSPSSS--------RRWAAMPGPGAPRPGAPGTWPVGFAVA 212 + G A + PS S AA PG G PG P FA A Sbjct: 389 QGLKTDAGGGAGGGGAGAGQRPSFSIDHIMGHGGGGAAPPGAGEGSPGPP------FAAA 442 Query: 213 APPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPG 246 A P A V A A AP A G + PG Sbjct: 443 AGPGGQAQVLAMLTAPALAPVA---GHIRLSHPG 473 Score = 36.2 bits (82), Expect = 0.029 Identities = 31/78 (39%), Positives = 32/78 (41%), Gaps = 11/78 (14%) Query: 190 AMPGPGAPRPGA---PGTWPVGFAVAAPPAAAA---SVAP-----PPPAVAGAPAAAFRG 238 A+P GAP PG P P FA AA AAA SV P PPP A A G Sbjct: 273 ALPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGAG 332 Query: 239 WVAAPDPGCTPGTENAPA 256 AP P G PA Sbjct: 333 SAPAPAPASGSGPGPGPA 350 Score = 33.5 bits (75), Expect = 0.19 Identities = 30/90 (33%), Positives = 31/90 (34%), Gaps = 13/90 (14%) Query: 44 GPAGAR----RGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAG 99 GP R GH PP A E G C P A ASR A AG Sbjct: 44 GPRAPRDVLPHGHEPPAEEAEADLAEDEEESGG---CSDGE-----PRALASRGAAAAAG 95 Query: 100 PAGPPCRAPGRGRAAATRRSPAPGTARGSP 129 GP A RG A P+ G A SP Sbjct: 96 SPGPGA-AAARGAAGPGPGPPSGGAATRSP 124 Score = 32.3 bits (72), Expect = 0.42 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 10/89 (11%) Query: 148 SVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPG---APRPGAPGT 204 ++PA PPP G P + A + +++ ++P PG AP PG P Sbjct: 273 ALPAYGAPPP------GPAPHPHPHPHAFAFAAAAAAAPCQLSVP-PGRAAAPPPGPPTA 325 Query: 205 WPVGFAVAAPPAAAASVAPPPPAVAGAPA 233 A +AP A AS + P P AG PA Sbjct: 326 SVFAGAGSAPAPAPASGSGPGPGPAGLPA 354 Score = 31.6 bits (70), Expect = 0.71 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Query: 159 GGTSLGAGSRALRRPGSAALPRSP---SSSRRWAAMPGPGAPRPGAPGTWPV 207 GG S G RAL G+AA SP +++ R AA PGPG P GA P+ Sbjct: 75 GGCSDGE-PRALASRGAAAAAGSPGPGAAAARGAAGPGPGPPSGGAATRSPL 125 Score = 30.0 bits (66), Expect = 2.1 Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 2/87 (2%) Query: 87 PARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146 PAR+ A R P G A A + G + G P + G A AA S G Sbjct: 40 PARSGPRAPRDVLPHGHEPPAEEAEADLAEDEEESGGCSDGEPRALASRGAAAAAGSPGP 99 Query: 147 RSVPARRLPPPCGGTSLGAGSRALRRP 173 + AR P G +G A R P Sbjct: 100 GAAAARGAAGP--GPGPPSGGAATRSP 124 Score = 29.6 bits (65), Expect = 2.7 Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 16/74 (21%) Query: 189 AAMPGPGAPRPG--APGTWPVGFAVAA------PPAAAASVAPPPPAVAGAPAAAFR--- 237 AA PGA PG A G + G+ +A PP A P P A A A AAA Sbjct: 248 AAAGDPGAFLPGFAAYGAYGYGYGLALPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQ 307 Query: 238 -----GWVAAPDPG 246 G AAP PG Sbjct: 308 LSVPPGRAAAPPPG 321 >gi|163965366 nascent polypeptide-associated complex alpha subunit isoform a [Homo sapiens] Length = 2078 Score = 58.2 bits (139), Expect = 7e-09 Identities = 69/220 (31%), Positives = 76/220 (34%), Gaps = 36/220 (16%) Query: 54 PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRA 113 P AP A + P GG P + A P A G A P PP AP Sbjct: 1121 PHKGAPTTPAATPPSP-KGGLATPPPKGAPTTPAATPPSPKGGLATP--PPKGAPTT--P 1175 Query: 114 AATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCGGTSLG 164 AAT SP G A SP G GG S G + PA P P GG + Sbjct: 1176 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATP 1235 Query: 165 AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGA-------------PGTWPVGFAV 211 + A P AA P SP A P GAP P A P AV Sbjct: 1236 SPKGAPTTP--AATPPSPKGGP--ATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAV 1291 Query: 212 AAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251 PP+ A PP A P AA P P +PGT Sbjct: 1292 VTPPSPKGGPATSPPKGAPTPPAA-----TPPSPKGSPGT 1326 Score = 55.5 bits (132), Expect = 5e-08 Identities = 71/218 (32%), Positives = 77/218 (35%), Gaps = 36/218 (16%) Query: 54 PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRA 113 PP AP A + P GG P + A P A G A P+ P AP Sbjct: 1144 PPKGAPTTPAATPPSP-KGGLATPPPKGAPTTPAATPPSPKGGLATPS--PKGAPTT--P 1198 Query: 114 AATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCGGTSLG 164 AAT SP G A SP G GG S G + PA P P GG + Sbjct: 1199 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATP 1258 Query: 165 AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP-----RP----GAPGTWPVGFA----V 211 A P AA P PS A P GAP P G P T P A Sbjct: 1259 PPKGAPTPP--AATP--PSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPA 1314 Query: 212 AAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTP 249 A PP+ S PPP A P A V P P TP Sbjct: 1315 ATPPSPKGSPGTPPPKGAPTPPA-----VTPPSPKGTP 1347 Score = 53.9 bits (128), Expect = 1e-07 Identities = 61/220 (27%), Positives = 72/220 (32%), Gaps = 20/220 (9%) Query: 54 PPTVAPAASAGS----QEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP-PCRAP 108 PP P S + +E P P PA S P +A + PA P P AP Sbjct: 881 PPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAP 940 Query: 109 GRGRAAATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCG 159 AAT SP G A SP GG S G + PA P P G Sbjct: 941 TP--PAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKG 998 Query: 160 GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAA 219 G + + A P A P SP S P + P A P G A P A Sbjct: 999 GPATPSPKGAPTPP--AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGA 1056 Query: 220 SVAPPP--PAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 P P+ G PA P P + PA+ Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096 Score = 52.8 bits (125), Expect = 3e-07 Identities = 61/219 (27%), Positives = 76/219 (34%), Gaps = 33/219 (15%) Query: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP 104 P GA +PP P + GS P P A P A+ + GPA P Sbjct: 1029 PKGAS---TPPAATPPSPKGS--------PAATPLPKGA--PTTPAATLPSPKGGPATPS 1075 Query: 105 CRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLG 164 + AAT SP G A SP G AT S G + P + P + Sbjct: 1076 LKGAPTP-PAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPP 1134 Query: 165 AGSRALRRPGSAALPRSPSSSRRWAAMPGPGA-----PRPGAPGTWPVGFAVAAPPAAAA 219 + L P P +P+ A P P P GAP T A PP+ Sbjct: 1135 SPKGGLATPPPKGAPTTPA-----ATPPSPKGGLATPPPKGAPTT-----PAATPPSPKG 1184 Query: 220 SVAPPPPAVAGAPAAAF----RGWVAAPDPGCTPGTENA 254 +A P P A AA +G +A P P P T A Sbjct: 1185 GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAA 1223 Score = 48.9 bits (115), Expect = 4e-06 Identities = 69/213 (32%), Positives = 78/213 (36%), Gaps = 25/213 (11%) Query: 55 PTVAPAASAGSQEHPGAGG---PLCFPARSAAWGPPAR-ASRAAGRRAGPAGP-PCRAPG 109 P APA S S A P PA + G P A+ + GPA P P AP Sbjct: 905 PKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPT 964 Query: 110 RGRAAATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCGG 160 AAT SP G A SP G GG S G + PA P P G Sbjct: 965 P--PAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGS 1022 Query: 161 TSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAPRPGAPGTWPVGFAVAAPPAAAA 219 + + P AA P SP S AA P P GAP A T P A P+ Sbjct: 1023 PAATPFPKGASTP-PAATPPSPKGSP--AATPLPKGAPTTPA-ATLPSPKGGPATPSLKG 1078 Query: 220 SVAPP---PPAVAGAPAAAFRGWVAAPDPGCTP 249 + PP PP+ G PA P P TP Sbjct: 1079 APTPPAATPPSPKGGPATPSPKGAPMP-PAATP 1110 Score = 43.5 bits (101), Expect = 2e-04 Identities = 59/227 (25%), Positives = 77/227 (33%), Gaps = 37/227 (16%) Query: 53 SPPTVAPAASAG---SQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPG 109 +PP P + G + H GA P S GP S G PA P G Sbjct: 1265 TPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPAT--SPPKGAPTPPAATPPSPKG 1322 Query: 110 RGRAAATRRSPAP-GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSR 168 + +P P SP G T +S G + ++ P P T G Sbjct: 1323 SPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGP 1382 Query: 169 ALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVA-APPAAAASVAPP--- 224 A+ +P S +R A+P P P +P P+ A A P A P Sbjct: 1383 AM----------TPPSPKRGPAIPSPKGD-PTSPAVIPLSPKKAPATPVTREGAATPSKG 1431 Query: 225 ---PPAVA-----GAPA-AAFRGWVAAPD-------PGCTPGTENAP 255 PPAV APA +A +G A P P TP + P Sbjct: 1432 DLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEP 1478 >gi|117938759 GNAS complex locus XLas [Homo sapiens] Length = 1037 Score = 57.0 bits (136), Expect = 2e-08 Identities = 59/176 (33%), Positives = 68/176 (38%), Gaps = 33/176 (18%) Query: 85 GPPARASRAAGRRAGPAGPPCR---APGRGRAAATRRSPAPGTARGSPAGVERAGGATAA 141 GPP + S A +R PP A G A A P GSPA AG A+A Sbjct: 334 GPPIKVSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPA----AGAASAD 389 Query: 142 SSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGA 201 ++A R+ PA P G T P S P P S +AA P GA P A Sbjct: 390 TAA--RAAPAAPADPDSGATP--------EDPDSGTAPADPDSGA-FAADPDSGAA-PAA 437 Query: 202 PGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 P A P + AA AP P AP A A PD G P APA+ Sbjct: 438 P---------ADPDSGAAPDAPADPDSGAAPDAP-----ADPDAGAAPEAPAAPAA 479 Score = 52.0 bits (123), Expect = 5e-07 Identities = 56/197 (28%), Positives = 71/197 (36%), Gaps = 20/197 (10%) Query: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP 104 P R PP AA GG + P + A A AA RA PA Sbjct: 343 PDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASADTAA--RAAPA--- 397 Query: 105 CRAPGRGRAAATRRSPAPGTARGSP-AGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163 AP + AT P GTA P +G A + A+ A + P Sbjct: 398 --APADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAAPAAPADPDSGAAPDAPADPDS 455 Query: 164 GAGSRALRRPGSAALPRSPSS---SRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAAS 220 GA A P + A P +P++ + AA P AP GAP AP A+A Sbjct: 456 GAAPDAPADPDAGAAPEAPAAPAAAETRAAHVAPAAPDAGAP---------TAPAASATR 506 Query: 221 VAPPPPAVAGAPAAAFR 237 A A + APA+ R Sbjct: 507 AAQVRRAASAAPASGAR 523 Score = 40.4 bits (93), Expect = 0.002 Identities = 49/170 (28%), Positives = 65/170 (38%), Gaps = 21/170 (12%) Query: 69 PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP-----CRAPGRGRAAATRRSPAPG 123 PGA G P P A AG R G + PP G G SP PG Sbjct: 189 PGAAGVPGAPPEE----PQALRPAKAGSRGGYSPPPEETMPFELDGEGFGDD---SPPPG 241 Query: 124 TARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPS 183 +R + A A+S+ R PA PP ++G+ S+ RP P + + Sbjct: 242 LSRVIAQVDGSSQFAAVAASSAVRLTPAANAPPLWVPGAIGSPSQEAVRP-----PSNFT 296 Query: 184 SSRRWAAMPGPGAPRPGAP-GTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232 S W + GP AP G + +PP A + PP V+GAP Sbjct: 297 GSSPWMEISGPPFEIGSAPAGVDDTPVNMDSPPIA---LDGPPIKVSGAP 343 Score = 36.6 bits (83), Expect = 0.022 Identities = 64/234 (27%), Positives = 79/234 (33%), Gaps = 22/234 (9%) Query: 46 AGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAW--GPPARASRAAGR--RAGPA 101 AG+R G+SPP E G P +R A G A+ AA R PA Sbjct: 210 AGSRGGYSPPPEETMPFELDGEGFGDDSPPPGLSRVIAQVDGSSQFAAVAASSAVRLTPA 269 Query: 102 G--PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSA--GTRSVPARRLPPP 157 PP PG + + P GS +E +G SA G P PP Sbjct: 270 ANAPPLWVPGAIGSPSQEAVRPPSNFTGSSPWMEISGPPFEIGSAPAGVDDTPVNMDSPP 329 Query: 158 CG--GTSLGAGSRALRRPGSAALPRSPSSSRRWAAM----------PGPGAPRPGAPGTW 205 G + +R + P ++ A PG G+P GA Sbjct: 330 IALDGPPIKVSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASAD 389 Query: 206 PVGFAVAAPPAAAASVAPPPPAVAG-APAAAFRGWVAA-PDPGCTPGTENAPAS 257 A A PA S A P +G APA G AA PD G P P S Sbjct: 390 TAARAAPAAPADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAAPAAPADPDS 443 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 56.6 bits (135), Expect = 2e-08 Identities = 71/230 (30%), Positives = 84/230 (36%), Gaps = 35/230 (15%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEH------PGAGGPLCFPARSAAWGPPARASRAAGRR 97 GP G PP PA G + PG GP P GPP Sbjct: 759 GPRGPTGPIGPP--GPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP---------- 806 Query: 98 AGPAGPPCRAPGR-GRAAATRRSPAPG-TARGSPAGVE-RAGGATAASSAGTRSVPARRL 154 GPAG P APG+ G APG G P GV GG+ A G + V R Sbjct: 807 -GPAGFP-GAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERG 864 Query: 155 PPPCGGTSLGAGSRALRRPGSA---ALPRSPSSSRRWAAMPGP--GAPRPGAPG-TWPVG 208 P G + G+R L P + P PS S PGP PG+PG + P G Sbjct: 865 SPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKG 924 Query: 209 FA-----VAAPPAAAASVAPPPPAVAGAPAA-AFRGWVAAPDPGCTPGTE 252 A +P A AP P +AG A G P P +PG + Sbjct: 925 DAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQ 974 Score = 56.2 bits (134), Expect = 3e-08 Identities = 71/218 (32%), Positives = 84/218 (38%), Gaps = 28/218 (12%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G+ PP P+ S G PG G P GP A + + + A Sbjct: 882 GPPGSNGNPGPP--GPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQG 939 Query: 104 PCRAPG----RGRAAATRRSPAPGT--ARGSPA--GVERAGGATAASS-AGTRSVPARRL 154 P APG G A + PG RGSP GV+ G A+ +G R P + Sbjct: 940 PPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQG 999 Query: 155 PPPCGGTSLGAGSRALRRPGSAALPRSPSS-----SRRWAAMPG-PGAP-RPGAPGTWPV 207 P GT+ G PGS LP S R PG PGAP PG PG PV Sbjct: 1000 LPGLAGTAGEPGRDG--NPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPG--PV 1055 Query: 208 GFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP 245 G A + + A P AGAP A G AP P Sbjct: 1056 GPAGKSGDRGESGPAGP----AGAPGPA--GSRGAPGP 1087 Score = 50.4 bits (119), Expect = 1e-06 Identities = 63/215 (29%), Positives = 72/215 (33%), Gaps = 25/215 (11%) Query: 57 VAPAASAGSQEHPGAGGPLCFPARSAAWGPPA----RASRAAGRRAGPAGPPCRAPGRGR 112 V PA S GS PG G + A GPP S GPAG P APG Sbjct: 353 VGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIP-GAPG--- 408 Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR-------LPPPCGGTSLGA 165 R P P A G+P GGA G + P R +P G Sbjct: 409 LMGARGPPGPAGANGAPG---LRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465 Query: 166 GSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-TWPVGFAVAAPPAAAASVAPP 224 + PG+ LP + R GP P G PG P G A PA A Sbjct: 466 KDGSPGEPGANGLP-GAAGERGAPGFRGPAGPN-GIPGEKGPAGERGAPGPAGPRGAAGE 523 Query: 225 P--PAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 P V G P RG +P + G P S Sbjct: 524 PGRDGVPGGP--GMRGMPGSPGGPGSDGKPGPPGS 556 Score = 50.1 bits (118), Expect = 2e-06 Identities = 59/222 (26%), Positives = 75/222 (33%), Gaps = 30/222 (13%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G++ P P +G + PG G FP G P + G R GP GP Sbjct: 552 GPPGSQGESGRP--GPPGPSGPRGQPGVMG---FPGPKGNDGAPGKN----GERGGPGGP 602 Query: 104 -PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTS 162 P PG+ + P P G G G + +P PP G Sbjct: 603 GPQGPPGKNGETGPQGPPGPTGPGGD------KGDTGPPGPQGLQGLPGTGGPPGENGKP 656 Query: 163 LGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP--RPGAPGTWPVGFAVAAPPAAAAS 220 G + G A P +P + A PG P GAPG G P + Sbjct: 657 GEPGPK-----GDAGAPGAP-GGKGDAGAPGERGPPGLAGAPGL-RGGAGPPGPEGGKGA 709 Query: 221 VAPP-PPAVAGAPA----AAFRGWVAAPDPGCTPGTENAPAS 257 PP PP AG P RG + +P P G P + Sbjct: 710 AGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGA 751 Score = 49.7 bits (117), Expect = 3e-06 Identities = 68/237 (28%), Positives = 79/237 (33%), Gaps = 43/237 (18%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GPAG PP + GS PG GP P ++ GPP GP+GP Sbjct: 174 GPAGPPGPPGPP--GTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPG-----AIGPSGP 226 Query: 104 PCR--APGRGRAAATRRSPAPGTARGSPAGVE----------------RAGGATAASSAG 145 + GR R P P +G PAG+ G A G Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKG-PAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKG 285 Query: 146 TRSVPARRLPPPCGGTSLGAGSRALRRPG--SAALPRSPSSSRRWAAMPGPGAPRPGAPG 203 +P P G G R RPG AA R +R PGP PG PG Sbjct: 286 ENGLPGENGAPGPMGPRGAPGERG--RPGLPGAAGARGNDGARGSDGQPGP----PGPPG 339 Query: 204 TWPVGFAVAAPPAAAASVAPP-PPAVAGAPA----AAFRGWVAAPDPGCTPGTENAP 255 T GF P A V P P GAP +G A P PG +P Sbjct: 340 T--AGF--PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSP 392 Score = 47.0 bits (110), Expect = 2e-05 Identities = 51/181 (28%), Positives = 59/181 (32%), Gaps = 14/181 (7%) Query: 64 GSQEHPGAGGPLCFPARSAAWGPPARASRAAGR-RAGPAGPPCRAPGRGRAAATRRSPAP 122 G PGA G P GP A ++ R +GPAGP APG A +R +P P Sbjct: 1035 GENGSPGAPGA---PGHPGPPGPVGPAGKSGDRGESGPAGP-AGAPG---PAGSRGAPGP 1087 Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182 RG G A G P P G GS P P P Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147 Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAP-----PAAAASVAPPPPAVAGAPAAAFR 237 + PGP P PG G + +P P P P G AAA Sbjct: 1148 PGKDGTSGHPGPIGP-PGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIA 1206 Query: 238 G 238 G Sbjct: 1207 G 1207 Score = 32.3 bits (72), Expect = 0.42 Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 12/112 (10%) Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112 +P + PA G+ PG GP S GPP + + GP GPP RG Sbjct: 1117 APGSPGPAGQQGAIGSPGPAGPRGPVGPS---GPPGKDGTSG--HPGPIGPPGPRGNRGE 1171 Query: 113 AAATRRSPAPGTARGSPAGVERA-----GGATAASSAGTRSVPARRLPPPCG 159 + PG + P G A GG AA+ AG A P G Sbjct: 1172 RGSEGSPGHPG--QPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYYG 1221 Score = 30.0 bits (66), Expect = 2.1 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 13/98 (13%) Query: 172 RPGSAALPRSPSSSRRWAAMPG----PGAP-RPGAPGT-WPVGFAVAAPPAAAASVAPP- 224 RP + P+ P +PG PG P +PG+PG+ P G + P + +P Sbjct: 97 RPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCP-TGPQNYSPQY 155 Query: 225 -----PPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 VA A + G P P PGT P S Sbjct: 156 DSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGS 193 >gi|122937321 UNC homeobox [Homo sapiens] Length = 531 Score = 56.6 bits (135), Expect = 2e-08 Identities = 70/267 (26%), Positives = 88/267 (32%), Gaps = 63/267 (23%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G + AP G PG P +P++ + GP R R A + A GP Sbjct: 256 GPGAHASGAAGTAPAPP---GEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADKDAASCGP 312 Query: 104 PCR--APGRGRAAATRRSP--APGTARGSPAGVERAGGATAASSAGTRSVPARRLPP--- 156 A RG A + SP SP + A A AA++AG P P Sbjct: 313 GAAVAAVERGAAGLPKASPFSVESLLSDSPPRRKAASNAAAAAAAGLDFAPGLPCAPRTL 372 Query: 157 -------------------PCGGTSLGAGSRALRR--PGSAALPRSPSSSRRWAAMPGPG 195 P GAG + P + A+P +P + + A GPG Sbjct: 373 IGKGHFLLYPITQPLGFLVPQAALKGGAGLEPAPKDAPPAPAVPPAPPAQASFGAFSGPG 432 Query: 196 -AP-------------RPGAPGTWPVGFAVAAPPAAA------------ASVAPPPPAVA 229 AP PGAP P F A AA A APPPPA + Sbjct: 433 GAPDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGPAPPPPAPS 492 Query: 230 GAPA------AAFRGWVAAPDPGCTPG 250 P A P+PG G Sbjct: 493 PRPGPRPPSPAEEPATCGVPEPGAAAG 519 Score = 51.2 bits (121), Expect = 9e-07 Identities = 73/266 (27%), Positives = 95/266 (35%), Gaps = 68/266 (25%) Query: 38 RYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRR 97 +++K L + R HSP ++ ++ S G GG + PP Sbjct: 206 KHEKKLLKSQGRHLHSPGGLSLHSAPSSDSDSGGGG--------LSPEPPE--------- 248 Query: 98 AGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPP 157 P P + PG + A +PAP +P + A + S AG + P R Sbjct: 249 --PPPPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADKD 306 Query: 158 CGGTSLGAGSRALRRPGSAALPR----------SPSSSRRWAAMPGPGAPRPG---APG- 203 GA A+ R G+A LP+ S S RR AA A G APG Sbjct: 307 AASCGPGAAVAAVER-GAAGLPKASPFSVESLLSDSPPRRKAASNAAAAAAAGLDFAPGL 365 Query: 204 ------------------TWPVGFAVAAPPAA---------AASVAPPPPAVAGAPAA-- 234 T P+GF V P AA A APP PAV AP A Sbjct: 366 PCAPRTLIGKGHFLLYPITQPLGFLV--PQAALKGGAGLEPAPKDAPPAPAVPPAPPAQA 423 Query: 235 ---AFRGWVAAPDPGCTPGTENAPAS 257 AF G APD + +A AS Sbjct: 424 SFGAFSGPGGAPDSAFARRSPDAVAS 449 Score = 41.6 bits (96), Expect = 7e-04 Identities = 50/149 (33%), Positives = 60/149 (40%), Gaps = 36/149 (24%) Query: 78 PARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGG 137 PA + PPA+AS G +GP G P +A RRSP A SP G Sbjct: 411 PAPAVPPAPPAQAS--FGAFSGPGGAP-------DSAFARRSP---DAVASP-------G 451 Query: 138 ATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP 197 A A + A R + + GG AG+ G A P +PS P PG P Sbjct: 452 APAPAPAPFRDLASAAATEGGGGDCADAGT-----AGPAPPPPAPS--------PRPG-P 497 Query: 198 RPGAPGTWPVGFAVAAPPAAAASVAPPPP 226 RP +P P V P AAA P PP Sbjct: 498 RPPSPAEEPATCGVPEPGAAA---GPSPP 523 Score = 30.4 bits (67), Expect = 1.6 Identities = 34/103 (33%), Positives = 36/103 (34%), Gaps = 18/103 (17%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPAR---SAAWGPPARASRAAGRRAGP 100 GP GA P + S + PGA P P R SAA A AGP Sbjct: 430 GPGGA-----PDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGP 484 Query: 101 AGPP--------CRAPGRGRAAATRRSPAPGTARG--SPAGVE 133 A PP R P AT P PG A G P G E Sbjct: 485 APPPPAPSPRPGPRPPSPAEEPATCGVPEPGAAAGPSPPEGEE 527 >gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sapiens] Length = 288 Score = 56.2 bits (134), Expect = 3e-08 Identities = 62/189 (32%), Positives = 74/189 (39%), Gaps = 31/189 (16%) Query: 80 RSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGAT 139 R+ AW P A+ A R AGPP AP AA S A A PA V A Sbjct: 92 RAVAWRP---AAAPAAVRPPAAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPAA---- 144 Query: 140 AASSAGTRSVPARRLPPPCG--GTSLGAGSRALRRPGSAAL-PRSPSSSRRWAAMPG--- 193 VPA PP G +L A A P +A+L SP ++ AA P Sbjct: 145 ---------VPAAVRPPAAGPPAAALAAVYPAAADPSAASLCAASPLAAVPAAASPAAVA 195 Query: 194 -----PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 248 PGA P A A P AA+ + A P +A PAAA R AAP C Sbjct: 196 PAAVCPGAAGPSAASLCAASQPAAVPAAASPAAAAP---LAVNPAAAARA-AAAPAAACV 251 Query: 249 PGTENAPAS 257 +PA+ Sbjct: 252 QSVAESPAT 260 Score = 50.1 bits (118), Expect = 2e-06 Identities = 63/244 (25%), Positives = 85/244 (34%), Gaps = 30/244 (12%) Query: 4 SRQRKIRPPHSDKDRDFRAVVPQ-----VNELQRKGLFWRYQKTLGPAGARRGHSPPTVA 58 +++RK R R+ + P V + + WR PA A PP Sbjct: 58 TKERKTRGDSCGNTRNLYPLTPWSAPVVVPSALTRAVAWR------PAAAPAAVRPPAAG 111 Query: 59 PAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPC--RAPGRGRAAAT 116 P A+A + P A P A A PPA A PA P R P G AA Sbjct: 112 PPAAAPAAVCPAAADPSA--ASLCAASPPA---------AVPAAVPAAVRPPAAGPPAAA 160 Query: 117 RRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSA 176 + P A S A + A A +A + + A P A A +P + Sbjct: 161 LAAVYPAAADPSAASLCAASPLAAVPAAASPAAVAPAAVCPGAAGPSAASLCAASQPAAV 220 Query: 177 ALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVA-----PPPPAVAGA 231 SP+++ A P A AP V +VA PA ++A PP P Sbjct: 221 PAAASPAAAAPLAVNPAAAARAAAAPAAACVQ-SVAESPATPLAIAQPVSFPPAPVPCAV 279 Query: 232 PAAA 235 P A Sbjct: 280 PPLA 283 Score = 34.7 bits (78), Expect = 0.084 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 178 LPRSPSSSRRWAAMPGPGAPRP---GAPGTWPVGFAVAA--PPAAAASVAPPPPAVAGAP 232 +P + + + W P A RP G P P AA P AA+ A PP AV A Sbjct: 86 VPSALTRAVAWRPAAAPAAVRPPAAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPAAV 145 Query: 233 AAAFRGWVAAP 243 AA R A P Sbjct: 146 PAAVRPPAAGP 156 >gi|71274172 ankyrin repeat domain 56 [Homo sapiens] Length = 793 Score = 55.8 bits (133), Expect = 4e-08 Identities = 64/216 (29%), Positives = 82/216 (37%), Gaps = 31/216 (14%) Query: 38 RYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRR 97 RY+ LG G +R PP AP+A G C P + PP + R R Sbjct: 76 RYRDLLGEEGLQRPREPPAAAPSA---------GGAAPCSPRGARRGEPPQQQPRRRRRE 126 Query: 98 AGPAGPPCRAPGRGRAAA--------TRRSPAP-GTARGSPAGVERAGGATAASSAGTRS 148 P P A R AA +RR+P G ++GSP A AA + S Sbjct: 127 KEPEEEPAGAAARAADAACNGLPGSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARAS 186 Query: 149 VPARRLPPPCGGTSLGAGSRALRRPGS-AALPRSPSSSRRWA-AMPGP---GAPRPGAPG 203 A + C L L PG ALP S ++ + A A+P GA R G Sbjct: 187 CAAAKTQGRCCWECLQNNLAVL--PGELGALPHSATAEEKPARALPAQDDRGASREREEG 244 Query: 204 TW----PVGFAVAAPPAA--AASVAPPPPAVAGAPA 233 PV +PPA AA+ PPA+ PA Sbjct: 245 ALAEPAPVPAVAHSPPATVEAATSRASPPALLPGPA 280 >gi|18641360 collectin sub-family member 12 [Homo sapiens] Length = 742 Score = 55.1 bits (131), Expect = 6e-08 Identities = 59/192 (30%), Positives = 72/192 (37%), Gaps = 35/192 (18%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G R PP P + G + G GP P + GP GPAGP Sbjct: 449 GPRGDRGSQGPP--GPTGNKGQKGEKGEPGP---PGPAGERGP-----------IGPAGP 492 Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPA--GVE-RAGGATAASSAGTRSVPARRLPPPCGG 160 P G+G ++ S P +RGSP G + +G G +P + PP G Sbjct: 493 PGERGGKG----SKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPPGFQG 548 Query: 161 TSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAAS 220 G + PG LP P MPGP P PG PG P G A P A + Sbjct: 549 LQGTVGEPGV--PGPRGLPGLPGV----PGMPGPKGP-PGPPG--PSG---AVVPLALQN 596 Query: 221 VAPPPPAVAGAP 232 P P G P Sbjct: 597 EPTPAPEDNGCP 608 >gi|48762934 alpha 2 type I collagen [Homo sapiens] Length = 1366 Score = 54.7 bits (130), Expect = 8e-08 Identities = 69/219 (31%), Positives = 77/219 (35%), Gaps = 33/219 (15%) Query: 43 LGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102 +GP GAR P T G + H G G P G P A G P Sbjct: 159 VGPQGARG--FPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPG----APGENGTPGQ 212 Query: 103 PPCRA-PG-RGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGG 160 R PG RGR A P P ARGS V G A SAG P P P G Sbjct: 213 TGARGLPGERGRVGA----PGPAGARGSDGSVGPVGPAGPIGSAGPPGFPG--APGPKG- 265 Query: 161 TSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP-----RPGAPGTWPVGFAVAAPP 215 +GA G+A P P+ R +PG P PGA G A P Sbjct: 266 -EIGA-------VGNAG-PAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPG 316 Query: 216 AAAASVAPPPPAVAG----APAAAFRGWVAAPDPGCTPG 250 A A P P + G A A RG V P P + G Sbjct: 317 VAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKG 355 Score = 50.1 bits (118), Expect = 2e-06 Identities = 62/224 (27%), Positives = 77/224 (34%), Gaps = 25/224 (11%) Query: 44 GPAGARR-----GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWG--------PPARA 90 GPAG R G S P V P + G+ GA G P + A G P A Sbjct: 277 GPAGPRGEVGLPGLSGP-VGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGA 335 Query: 91 SRAAGRRA-----GPAGPPCRAPGRGR--AAATRRSPAPGTARGSPAGVERAGGATAASS 143 + A G R GPAG + +G +A + P P G AG A Sbjct: 336 AGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP 395 Query: 144 AGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR--PGA 201 G R P R P G + G R A R P+ PG PR PG+ Sbjct: 396 PGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGS 455 Query: 202 PGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP 245 PG +G A P + P + A A G + P P Sbjct: 456 PGN--IGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGP 497 Score = 45.4 bits (106), Expect = 5e-05 Identities = 58/186 (31%), Positives = 65/186 (34%), Gaps = 11/186 (5%) Query: 51 GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR-ASRAAGRRAGPAGPPCRAPG 109 G S P+ P G+ PG G P G P R +R A G GP Sbjct: 634 GPSGPSGLPG-ERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGD 692 Query: 110 RGRAAATRRSPA-PGTARGSP---AGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGA 165 RG A A PA P RGSP V AG A AG P + G Sbjct: 693 RGEAGAA--GPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGEN 750 Query: 166 GSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPP- 224 G P AA P P+ A G G P PG G +P PP + PP Sbjct: 751 GVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGP-PGMTG-FPGAAGRTGPPGPSGISGPPG 808 Query: 225 PPAVAG 230 PP AG Sbjct: 809 PPGPAG 814 Score = 43.1 bits (100), Expect = 2e-04 Identities = 61/216 (28%), Positives = 73/216 (33%), Gaps = 46/216 (21%) Query: 59 PAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP-----PCRAPGRGRA 113 PA + G + GA GP + GP R S GPAGP P A G+ A Sbjct: 686 PAGATGDRGEAGAAGP------AGPAGP--RGSPGERGEVGPAGPNGFAGPAGAAGQPGA 737 Query: 114 AATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP 173 R + P +G V G AA AG P P G G P Sbjct: 738 KGERGAKGP---KGENGVVGPTGPVGAAGPAGPNGPPG-----PAGSRGDGGPPGMTGFP 789 Query: 174 GSAALPRSPSSSRRWAAMPGPGAP-----------------RPGAPGT-WPVGFAVAAPP 215 G+A P S + PGP P R G G P GFA P Sbjct: 790 GAAGRTGPPGPSGI-SGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGP 848 Query: 216 AAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251 + A A PP G P +G + AP PG+ Sbjct: 849 SGEAGTAGPP----GTPGP--QGLLGAPGILGLPGS 878 Score = 38.5 bits (88), Expect = 0.006 Identities = 62/217 (28%), Positives = 71/217 (32%), Gaps = 49/217 (22%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS-RAAGRRAGPAG 102 GP+G PP PA G + G GP+ A GPP A + AG AG Sbjct: 799 GPSGISGPPGPP--GPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAG 856 Query: 103 PP--------CRAPG----------RGRAAATRRSPAPGT--------ARGSPAGVERAG 136 PP APG RG PG ARG P V G Sbjct: 857 PPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPG 916 Query: 137 GATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGA 196 A AG P PP G G R PG+ P + A PGP Sbjct: 917 VNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGY--PGNI----GPVGA---AGAPGPHG 967 Query: 197 P-----RPGAPG-TWPVGFAVAAPPAAAASVAPPPPA 227 P + G G T P G P A +V P P+ Sbjct: 968 PVGPAGKHGNRGETGPSG-----PVGPAGAVGPRGPS 999 Score = 37.4 bits (85), Expect = 0.013 Identities = 39/125 (31%), Positives = 45/125 (36%), Gaps = 13/125 (10%) Query: 43 LGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPA---RSAAWGPPARASRAAGRRA- 98 +GPAGA P P G + PG GP P + G P A + A Sbjct: 987 VGPAGAVGPRGPS--GPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAP 1044 Query: 99 ---GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155 GPAGP A G A R+ PGT PAG+ G AG P P Sbjct: 1045 GSVGPAGPRGPAGPSGPAGKDGRTGHPGTV--GPAGIR--GPQGHQGPAGPPGPPGPPGP 1100 Query: 156 PPCGG 160 P G Sbjct: 1101 PGVSG 1105 Score = 33.5 bits (75), Expect = 0.19 Identities = 56/225 (24%), Positives = 66/225 (29%), Gaps = 48/225 (21%) Query: 59 PAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRR 118 PA G + G GP GPP GP GPP G AA Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPP-----------GPPGPPGPPGLGGNFAAQYD 82 Query: 119 SPAPGTARG-----SPAGVERAGGATAASS----AGTRSVPARRLPPPCGGTSLGAGSRA 169 G G P G A GA AG P + P G + G Sbjct: 83 GKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAG 142 Query: 170 L-RRPGSAALPR-----SPSSSRRWAAMPG-PG-------------APRPGAPGTWPVGF 209 PG P P +R + PG PG +PGAPG Sbjct: 143 EDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPG------ 196 Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENA 254 P A + P G P RG V AP P G++ + Sbjct: 197 VKGEPGAPGENGTPGQTGARGLPGE--RGRVGAPGPAGARGSDGS 239 >gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapiens] Length = 673 Score = 54.3 bits (129), Expect = 1e-07 Identities = 56/221 (25%), Positives = 81/221 (36%), Gaps = 36/221 (16%) Query: 40 QKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS-------- 91 Q T P G SP T +P S P P P+R++ P+RAS Sbjct: 461 QSTASPTG-----SPSTASPTGS------PSTASPTGSPSRASLTRTPSRASLTKMESTA 509 Query: 92 ---RAAGRR--------AGPAGPPCRAPGRGRA--AATRRSPAPGTARGSPAGVERAGGA 138 R R A P G P A G AA R+P+ + +P+ + Sbjct: 510 SITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTPS 569 Query: 139 TAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWA----AMPGP 194 A+ + +V R+PP T + + + P SA L + S++ A P Sbjct: 570 RASLTRTPSTVLLTRMPPSASPTGMPSRTSPTGMPSSALLTKMDSTASITRTPPRASPTE 629 Query: 195 GAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235 PR GT P PP A+ + PP + G P+ A Sbjct: 630 TPPRASPTGTPPRASPTGTPPRASPTGTPPRASPTGTPSRA 670 Score = 45.8 bits (107), Expect = 4e-05 Identities = 57/223 (25%), Positives = 82/223 (36%), Gaps = 31/223 (13%) Query: 38 RYQKTLGPAGARRGHSPPTVAPA---ASAGSQEHPGAGGPLCFPARSAAWGPPARAS-RA 93 R T P+ A PP +P + + P P R++ G P RAS Sbjct: 391 RASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTG 450 Query: 94 AGRRAGPAGPPCRAPGRGRAAATRRSPAPGTA--RGSPAGV------ERAGGATAASSAG 145 RA P G A G + + +P TA GSP+ RA S+A Sbjct: 451 TPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTAS 510 Query: 146 TRSVPARRLP-----------PPCGGTSLGAGSRA--LRRPGSAALPRSPSSSRRWAAMP 192 P+R P P ++G+ SRA R P A+L R+PS A++ Sbjct: 511 ITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSR----ASLT 566 Query: 193 GPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235 P R T PP+A+ + P + G P++A Sbjct: 567 TPS--RASLTRTPSTVLLTRMPPSASPTGMPSRTSPTGMPSSA 607 Score = 45.4 bits (106), Expect = 5e-05 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 13/184 (7%) Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS-RAAGRRAGPAGPPCRAPGRG 111 +PPT P+ ++ ++ P P+R++ G P+ AS RA G P RA +G Sbjct: 2 APPTRTPSRASPTRT-PSTASLTGTPSRASLTGTPSTASLMGTPSRASLTGTPPRASLKG 60 Query: 112 RAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALR 171 + +P +R S ++ + T S + +R+PP T + +R Sbjct: 61 TTSMASLMVSP--SRASLTRMQSSSLLTRTPSMAS----LKRMPPRASRTRTLPRASLMR 114 Query: 172 RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGA 231 RP +A+L RSPS R + P R T A+ P A+ + PP ++ Sbjct: 115 RPSTASLTRSPS---RASLTTTPS--RASLSMTPSTAAALTMPSRASLTRTPPRASLTMT 169 Query: 232 PAAA 235 P+ A Sbjct: 170 PSTA 173 Score = 41.2 bits (95), Expect = 9e-04 Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 7/157 (4%) Query: 86 PPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTAR--GSPAGVERAGGATAASS 143 PP + RA P G P A G + + +P TA G + G AS Sbjct: 335 PPRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRASP 394 Query: 144 AGTRSVPA-RRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMP---GPGAPRP 199 GT S + R PP T + + + + +A+ R+P + P G P Sbjct: 395 TGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSR 454 Query: 200 GAP-GTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235 +P GT +P A+ + +P + G+P+ A Sbjct: 455 ASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRA 491 Score = 38.1 bits (87), Expect = 0.008 Identities = 57/236 (24%), Positives = 84/236 (35%), Gaps = 40/236 (16%) Query: 45 PAGARRGHSPP----TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAG----- 95 P+ A +PP T+ P+ ++ ++ P A P P+R++ G P+ AS Sbjct: 152 PSRASLTRTPPRASLTMTPSTASLTRTPPRAS-PTGMPSRTSPTGMPSTASLTKMDSTAS 210 Query: 96 -----RRAGPAGPPCRAPGRGRAAATRRSPAPGTA-------RGSPAG-VERAGGATAAS 142 RA P G P RA G S P TA R SP G + R S Sbjct: 211 ITRTLSRASPTGTPPRASPTGSPPRASLSMMPSTALLIRTPPRASPTGMLSRTSLTKMDS 270 Query: 143 SAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAP 202 +A P+R GT P A+L +PS++ + PR Sbjct: 271 TASITRTPSRPSTASPTGT-----------PSRASLSMTPSTASLMRML-----PRASPT 314 Query: 203 GTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGTENAPAS 257 G A+ S PP ++ P+ A+ G + P TP + S Sbjct: 315 GMLSRTSLTKMDSTASISRTPPRASITRTPSRASPTGKPSTASPTGTPSRASPTGS 370 Score = 37.0 bits (84), Expect = 0.017 Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 8/150 (5%) Query: 91 SRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVP 150 S A+ R P R P R A+ P+ + G+P+ G + AS G S Sbjct: 327 STASISRTPPRASITRTPSR---ASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTA 383 Query: 151 A-RRLPPPCGGTSLGAGSRALRRPGSAA----LPRSPSSSRRWAAMPGPGAPRPGAPGTW 205 + PP T + + R+P A+ L R+ + A P PR GT Sbjct: 384 SPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTP 443 Query: 206 PVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235 P P A+ + + G+P+ A Sbjct: 444 PRASPTGTPSRASPTGTQSTASPTGSPSTA 473 >gi|19924097 synapsin I isoform Ib [Homo sapiens] Length = 669 Score = 53.1 bits (126), Expect = 2e-07 Identities = 57/208 (27%), Positives = 79/208 (37%), Gaps = 27/208 (12%) Query: 44 GPAGARRGHSPPTVAPAASAGSQE----HPGAGGPLCFPARSAAWGPPARASRAA----- 94 GP R+G PP G Q P AG PL S P AS+AA Sbjct: 471 GPGPQRQG--PPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528 Query: 95 -GRRA-----GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRS 148 GR++ GP PP P + + P T + S +G + A R Sbjct: 529 QGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQ 588 Query: 149 VPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAPRPGAPGTWPV 207 P ++ P P G T + + + R G P++ + + PGP G P+P Sbjct: 589 GPPQKPPGPAGPTRQASQAGPVPRTG------PPTTQQPRPSGPGPAGRPKPQLA---QK 639 Query: 208 GFAVAAPPAAAASVAPPPPAVAGAPAAA 235 PPA AA+ PP P + +PA A Sbjct: 640 PSQDVPPPATAAAGGPPHPQLKASPAQA 667 Score = 50.8 bits (120), Expect = 1e-06 Identities = 56/187 (29%), Positives = 70/187 (37%), Gaps = 45/187 (24%) Query: 78 PARSAAWGPPARASRAAGRRAG--PAGPPC--RAPGRGRAAATRRSPAPGTARGSPAGVE 133 P R + P+ + GR+ PAGPP R P +G P PG R P Sbjct: 428 PGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPP----QPGPGPQRQGP---- 479 Query: 134 RAGGATAASSAGTRSVPARRLPPPCGGTSLG-----AGSRALRR-PGSAALPRSPSSSRR 187 P ++ PPP G L AGS +R P + P+ P+S Sbjct: 480 ----------------PLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQ-- 521 Query: 188 WAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP-- 245 AA P G R P V APPAA +P P AG P A + V+ P P Sbjct: 522 -AAPPTQGQGRQSRP----VAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPK 576 Query: 246 --GCTPG 250 G PG Sbjct: 577 ASGAPPG 583 >gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] Length = 1120 Score = 52.8 bits (125), Expect = 3e-07 Identities = 73/249 (29%), Positives = 81/249 (32%), Gaps = 59/249 (23%) Query: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAG--------- 95 PAG PP A AS +E PG G PP+R S G Sbjct: 828 PAGPSEPPGPPAPAGPASDTEEEEPGPEGT-----------PPSRGSSGEGLPFAEEGNL 876 Query: 96 ---RRAGPAGPPCRAPGRGRAAATRRSPAP----------GTARGSPAGVERAGGATAAS 142 +R PAGPP R +P P T + P ER TA Sbjct: 877 TIKQRPKPAGPP-----------PRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALL 925 Query: 143 SAGTRSV---PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP 199 + G S PA LP P G S A S P S P+ AM P P P Sbjct: 926 AFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCP 985 Query: 200 G------APGTWPVGFAVAAPPAA-----AASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 248 G A W A PAA A AP P +VA AF G AP G Sbjct: 986 GPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVA-CTQLAFSGPKLAPRLGPR 1044 Query: 249 PGTENAPAS 257 P P S Sbjct: 1045 PVPPPRPES 1053 Score = 41.6 bits (96), Expect = 7e-04 Identities = 49/180 (27%), Positives = 66/180 (36%), Gaps = 23/180 (12%) Query: 47 GARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCR 106 G RR P + + E P GP + + P +A+ A G PP R Sbjct: 553 GGRRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPAR 612 Query: 107 APGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAG 166 +P + A RS G ++ PA G S R++P PP +SL Sbjct: 613 SPSQESIGA--RSRGSGHSQEQPAPQPSGGD---PSPPQERNLPEGTERPPKLCSSL--- 664 Query: 167 SRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPP 226 PG P + + P PG P PGAP W + +A PPA PP P Sbjct: 665 ------PGQGPPPYVFMYPQGSPSSPAPGPP-PGAP--WAFSY-LAGPPA-----TPPDP 709 Score = 39.7 bits (91), Expect = 0.003 Identities = 70/249 (28%), Positives = 74/249 (29%), Gaps = 71/249 (28%) Query: 51 GHSPPTVAPAASAGSQEHPGAGGPLCFP-ARSAAWGPPA------RASR----------- 92 G PP GS P G P P A S GPPA R R Sbjct: 666 GQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPT 725 Query: 93 ---AAGRRAGPAGPPC-------RAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAAS 142 A G GP G R PGR T S P ARG+P A A Sbjct: 726 EGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTP---RSQSFALRAR 782 Query: 143 SAGTRSVPARRL---------PPPCG---GTSLGAGSRALRRPGSAALPRSPSSSRRWAA 190 G P +RL PPP G GA R A P P Sbjct: 783 RKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEP-------- 834 Query: 191 MPGPGAP----------RPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240 PGP AP PG GT PP+ +S P A G R Sbjct: 835 -PGPPAPAGPASDTEEEEPGPEGT---------PPSRGSSGEGLPFAEEGNLTIKQRPKP 884 Query: 241 AAPDPGCTP 249 A P P TP Sbjct: 885 AGPPPRETP 893 >gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] Length = 1202 Score = 52.8 bits (125), Expect = 3e-07 Identities = 73/249 (29%), Positives = 81/249 (32%), Gaps = 59/249 (23%) Query: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAG--------- 95 PAG PP A AS +E PG G PP+R S G Sbjct: 910 PAGPSEPPGPPAPAGPASDTEEEEPGPEGT-----------PPSRGSSGEGLPFAEEGNL 958 Query: 96 ---RRAGPAGPPCRAPGRGRAAATRRSPAP----------GTARGSPAGVERAGGATAAS 142 +R PAGPP R +P P T + P ER TA Sbjct: 959 TIKQRPKPAGPP-----------PRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALL 1007 Query: 143 SAGTRSV---PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP 199 + G S PA LP P G S A S P S P+ AM P P P Sbjct: 1008 AFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCP 1067 Query: 200 G------APGTWPVGFAVAAPPAA-----AASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 248 G A W A PAA A AP P +VA AF G AP G Sbjct: 1068 GPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVA-CTQLAFSGPKLAPRLGPR 1126 Query: 249 PGTENAPAS 257 P P S Sbjct: 1127 PVPPPRPES 1135 Score = 41.6 bits (96), Expect = 7e-04 Identities = 49/180 (27%), Positives = 66/180 (36%), Gaps = 23/180 (12%) Query: 47 GARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCR 106 G RR P + + E P GP + + P +A+ A G PP R Sbjct: 635 GGRRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPAR 694 Query: 107 APGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAG 166 +P + A RS G ++ PA G S R++P PP +SL Sbjct: 695 SPSQESIGA--RSRGSGHSQEQPAPQPSGGD---PSPPQERNLPEGTERPPKLCSSL--- 746 Query: 167 SRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPP 226 PG P + + P PG P PGAP W + +A PPA PP P Sbjct: 747 ------PGQGPPPYVFMYPQGSPSSPAPGPP-PGAP--WAFSY-LAGPPA-----TPPDP 791 Score = 39.7 bits (91), Expect = 0.003 Identities = 70/249 (28%), Positives = 74/249 (29%), Gaps = 71/249 (28%) Query: 51 GHSPPTVAPAASAGSQEHPGAGGPLCFP-ARSAAWGPPA------RASR----------- 92 G PP GS P G P P A S GPPA R R Sbjct: 748 GQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPT 807 Query: 93 ---AAGRRAGPAGPPC-------RAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAAS 142 A G GP G R PGR T S P ARG+P A A Sbjct: 808 EGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTP---RSQSFALRAR 864 Query: 143 SAGTRSVPARRL---------PPPCG---GTSLGAGSRALRRPGSAALPRSPSSSRRWAA 190 G P +RL PPP G GA R A P P Sbjct: 865 RKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEP-------- 916 Query: 191 MPGPGAP----------RPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240 PGP AP PG GT PP+ +S P A G R Sbjct: 917 -PGPPAPAGPASDTEEEEPGPEGT---------PPSRGSSGEGLPFAEEGNLTIKQRPKP 966 Query: 241 AAPDPGCTP 249 A P P TP Sbjct: 967 AGPPPRETP 975 >gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo sapiens] Length = 1650 Score = 52.4 bits (124), Expect = 4e-07 Identities = 73/247 (29%), Positives = 79/247 (31%), Gaps = 52/247 (21%) Query: 44 GPAGAR--RGHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPA----- 88 GP G R RG + + A S G H PG GP FP GPP Sbjct: 758 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 817 Query: 89 -----RASRAAGRRAGPAGPPCRAPGRGRAAAT-----RRSPA----------PGTA--R 126 R + GP GPP +G A T R P PGTA Sbjct: 818 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 877 Query: 127 GSPAGVERAGGATAASSAGTRSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185 G+ G AG R P R LP GG L PG A P Sbjct: 878 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP----GE 933 Query: 186 RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA--AFRGWVAAP 243 R A GP P PG PG P G PP AA P P +G V P Sbjct: 934 RGAAGSGGPIGP-PGRPG--PQG-----PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 985 Query: 244 DPGCTPG 250 P PG Sbjct: 986 GPAGPPG 992 Score = 51.2 bits (121), Expect = 9e-07 Identities = 64/237 (27%), Positives = 78/237 (32%), Gaps = 47/237 (19%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-ARASRAAGRRAGPAG 102 GP+G PP PA S G + G+GGP+ P R GPP A + GP G Sbjct: 920 GPSG------PP--GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 971 Query: 103 PPCRAPGRGRAAATRRSPAPGTA-----------------------RGSPAGVERAGGAT 139 P R +G + PG A G P G Sbjct: 972 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1031 Query: 140 AASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP----GSAALPRSPSSSRRWAAMPGPG 195 +AG P R P G G+R P G LP PS + GP Sbjct: 1032 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP-GPSGEKGETGDVGPM 1090 Query: 196 APRPGAPG-TWPVGFAVA----APPAAAASVAPP----PPAVAGAPAAAFRGWVAAP 243 P PG PG P G A PP ++ PP P +G+P V P Sbjct: 1091 GP-PGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGP 1146 Score = 43.5 bits (101), Expect = 2e-04 Identities = 66/231 (28%), Positives = 77/231 (33%), Gaps = 43/231 (18%) Query: 44 GPAGARRGHSPPTVAPAASA-----------GSQEHPGAGGP---LCFPARSAAWGPPAR 89 GP G + G + PT P G +PG GP L FP A G + Sbjct: 683 GPEGPK-GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGE--K 739 Query: 90 ASRAAGRRAGPAG---PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146 +R ++GP G P RG AT +S A GT+ G G Sbjct: 740 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD----------------GP 783 Query: 147 RSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-T 204 P R LP P G PG LP P R G P PG PG Sbjct: 784 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGP-PGPPGVV 841 Query: 205 WPVGFA-VAAPPAAAASVAPP-PPAVAGAPAAAFR-GWVAAPDPGCTPGTE 252 P G A P PP PP G P A + G P P PG + Sbjct: 842 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD 892 Score = 39.7 bits (91), Expect = 0.003 Identities = 52/199 (26%), Positives = 60/199 (30%), Gaps = 48/199 (24%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G R PA S GS+ G G P A G + GP GP Sbjct: 1229 GPLGKR--------GPAGSPGSEGRQGGKGAKGDPGAIGAPG-----------KTGPVGP 1269 Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163 A P P RG P V + G A AG P PP G Sbjct: 1270 ----------AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRG 1316 Query: 164 GAGSRALR----------------RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207 AG++ + G LP S + M PGA P PG P Sbjct: 1317 DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1376 Query: 208 GFAVAAPPAAAASVAPPPP 226 A P A + P P Sbjct: 1377 LPGPAGPKGAKGATGPGGP 1395 Score = 38.9 bits (89), Expect = 0.004 Identities = 40/159 (25%), Positives = 50/159 (31%), Gaps = 17/159 (10%) Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112 +P P AG PG G P G P +A GP GPP RG Sbjct: 1260 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP--PGPVGPPGLPGLRGD 1317 Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172 A A +G P + G G R +P + P G G+ Sbjct: 1318 AGAKGE-------KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1370 Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPR--------PGAPG 203 PG P+ + GPG P+ PG PG Sbjct: 1371 PGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1409 Score = 33.5 bits (75), Expect = 0.19 Identities = 55/201 (27%), Positives = 65/201 (32%), Gaps = 50/201 (24%) Query: 42 TLGPAGARRGHSPPTVAPAAS--AGSQEHPG-------AGGPLCFPARSAAWGPPARASR 92 T G G + PP AP AG + PG AGGP GPP A Sbjct: 873 TAGKEGTKGDPGPPG-APGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGS 930 Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152 R A +G P PGR P P +G P +AG + VP Sbjct: 931 PGERGAAGSGGPIGPPGR---------PGP---QGPP------------GAAGEKGVPGE 966 Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP----------RPGAP 202 + P G T + PG A P + PG PG P Sbjct: 967 K--GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPP 1024 Query: 203 GTWPVGFAVAAPPAAAASVAP 223 G P+G V P AA A P Sbjct: 1025 G--PIG-PVGQPGAAGADGEP 1042 Score = 33.1 bits (74), Expect = 0.24 Identities = 50/193 (25%), Positives = 60/193 (31%), Gaps = 23/193 (11%) Query: 64 GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRA-GPAGPPCRAPGRGRAAATRRSPAP 122 G + G GPL P G R G GPP +A RGRA A Sbjct: 404 GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGA------- 456 Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182 ARG P G G +P LP G G++ L P R Sbjct: 457 DGARGMP------GDPGVKGDRGFDGLPG--LPGEKGHRG-DTGAQGLPGPPGEDGERGD 507 Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 242 +PG PR P G + PP P P + P +G Sbjct: 508 DGEIGPRGLPGESGPRGLLGPKGPPG--IPGPPGVRGMDGPQGPKGSLGP----QGEPGP 561 Query: 243 PDPGCTPGTENAP 255 P TPGT+ P Sbjct: 562 PGQQGTPGTQGLP 574 >gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo sapiens] Length = 1629 Score = 52.4 bits (124), Expect = 4e-07 Identities = 73/247 (29%), Positives = 79/247 (31%), Gaps = 52/247 (21%) Query: 44 GPAGAR--RGHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPA----- 88 GP G R RG + + A S G H PG GP FP GPP Sbjct: 737 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 796 Query: 89 -----RASRAAGRRAGPAGPPCRAPGRGRAAAT-----RRSPA----------PGTA--R 126 R + GP GPP +G A T R P PGTA Sbjct: 797 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 856 Query: 127 GSPAGVERAGGATAASSAGTRSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185 G+ G AG R P R LP GG L PG A P Sbjct: 857 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP----GE 912 Query: 186 RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA--AFRGWVAAP 243 R A GP P PG PG P G PP AA P P +G V P Sbjct: 913 RGAAGSGGPIGP-PGRPG--PQG-----PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 964 Query: 244 DPGCTPG 250 P PG Sbjct: 965 GPAGPPG 971 Score = 51.2 bits (121), Expect = 9e-07 Identities = 64/237 (27%), Positives = 78/237 (32%), Gaps = 47/237 (19%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-ARASRAAGRRAGPAG 102 GP+G PP PA S G + G+GGP+ P R GPP A + GP G Sbjct: 899 GPSG------PP--GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 950 Query: 103 PPCRAPGRGRAAATRRSPAPGTA-----------------------RGSPAGVERAGGAT 139 P R +G + PG A G P G Sbjct: 951 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1010 Query: 140 AASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP----GSAALPRSPSSSRRWAAMPGPG 195 +AG P R P G G+R P G LP PS + GP Sbjct: 1011 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP-GPSGEKGETGDVGPM 1069 Query: 196 APRPGAPG-TWPVGFAVA----APPAAAASVAPP----PPAVAGAPAAAFRGWVAAP 243 P PG PG P G A PP ++ PP P +G+P V P Sbjct: 1070 GP-PGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGP 1125 Score = 43.5 bits (101), Expect = 2e-04 Identities = 66/231 (28%), Positives = 77/231 (33%), Gaps = 43/231 (18%) Query: 44 GPAGARRGHSPPTVAPAASA-----------GSQEHPGAGGP---LCFPARSAAWGPPAR 89 GP G + G + PT P G +PG GP L FP A G + Sbjct: 662 GPEGPK-GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGE--K 718 Query: 90 ASRAAGRRAGPAG---PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146 +R ++GP G P RG AT +S A GT+ G G Sbjct: 719 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD----------------GP 762 Query: 147 RSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-T 204 P R LP P G PG LP P R G P PG PG Sbjct: 763 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGP-PGPPGVV 820 Query: 205 WPVGFA-VAAPPAAAASVAPP-PPAVAGAPAAAFR-GWVAAPDPGCTPGTE 252 P G A P PP PP G P A + G P P PG + Sbjct: 821 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD 871 Score = 39.7 bits (91), Expect = 0.003 Identities = 52/199 (26%), Positives = 60/199 (30%), Gaps = 48/199 (24%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G R PA S GS+ G G P A G + GP GP Sbjct: 1208 GPLGKR--------GPAGSPGSEGRQGGKGAKGDPGAIGAPG-----------KTGPVGP 1248 Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163 A P P RG P V + G A AG P PP G Sbjct: 1249 ----------AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRG 1295 Query: 164 GAGSRALR----------------RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207 AG++ + G LP S + M PGA P PG P Sbjct: 1296 DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1355 Query: 208 GFAVAAPPAAAASVAPPPP 226 A P A + P P Sbjct: 1356 LPGPAGPKGAKGATGPGGP 1374 Score = 38.9 bits (89), Expect = 0.004 Identities = 40/159 (25%), Positives = 50/159 (31%), Gaps = 17/159 (10%) Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112 +P P AG PG G P G P +A GP GPP RG Sbjct: 1239 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP--PGPVGPPGLPGLRGD 1296 Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172 A A +G P + G G R +P + P G G+ Sbjct: 1297 AGAKGE-------KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1349 Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPR--------PGAPG 203 PG P+ + GPG P+ PG PG Sbjct: 1350 PGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1388 Score = 33.5 bits (75), Expect = 0.19 Identities = 55/201 (27%), Positives = 65/201 (32%), Gaps = 50/201 (24%) Query: 42 TLGPAGARRGHSPPTVAPAAS--AGSQEHPG-------AGGPLCFPARSAAWGPPARASR 92 T G G + PP AP AG + PG AGGP GPP A Sbjct: 852 TAGKEGTKGDPGPPG-APGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGS 909 Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152 R A +G P PGR P P +G P +AG + VP Sbjct: 910 PGERGAAGSGGPIGPPGR---------PGP---QGPP------------GAAGEKGVPGE 945 Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP----------RPGAP 202 + P G T + PG A P + PG PG P Sbjct: 946 K--GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPP 1003 Query: 203 GTWPVGFAVAAPPAAAASVAP 223 G P+G V P AA A P Sbjct: 1004 G--PIG-PVGQPGAAGADGEP 1021 Score = 33.1 bits (74), Expect = 0.24 Identities = 50/193 (25%), Positives = 60/193 (31%), Gaps = 23/193 (11%) Query: 64 GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRA-GPAGPPCRAPGRGRAAATRRSPAP 122 G + G GPL P G R G GPP +A RGRA A Sbjct: 383 GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGA------- 435 Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182 ARG P G G +P LP G G++ L P R Sbjct: 436 DGARGMP------GDPGVKGDRGFDGLPG--LPGEKGHRG-DTGAQGLPGPPGEDGERGD 486 Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 242 +PG PR P G + PP P P + P +G Sbjct: 487 DGEIGPRGLPGESGPRGLLGPKGPPG--IPGPPGVRGMDGPQGPKGSLGP----QGEPGP 540 Query: 243 PDPGCTPGTENAP 255 P TPGT+ P Sbjct: 541 PGQQGTPGTQGLP 553 >gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo sapiens] Length = 1736 Score = 52.4 bits (124), Expect = 4e-07 Identities = 73/247 (29%), Positives = 79/247 (31%), Gaps = 52/247 (21%) Query: 44 GPAGAR--RGHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPA----- 88 GP G R RG + + A S G H PG GP FP GPP Sbjct: 844 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 903 Query: 89 -----RASRAAGRRAGPAGPPCRAPGRGRAAAT-----RRSPA----------PGTA--R 126 R + GP GPP +G A T R P PGTA Sbjct: 904 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 963 Query: 127 GSPAGVERAGGATAASSAGTRSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185 G+ G AG R P R LP GG L PG A P Sbjct: 964 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP----GE 1019 Query: 186 RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA--AFRGWVAAP 243 R A GP P PG PG P G PP AA P P +G V P Sbjct: 1020 RGAAGSGGPIGP-PGRPG--PQG-----PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 1071 Query: 244 DPGCTPG 250 P PG Sbjct: 1072 GPAGPPG 1078 Score = 51.2 bits (121), Expect = 9e-07 Identities = 64/237 (27%), Positives = 78/237 (32%), Gaps = 47/237 (19%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-ARASRAAGRRAGPAG 102 GP+G PP PA S G + G+GGP+ P R GPP A + GP G Sbjct: 1006 GPSG------PP--GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 1057 Query: 103 PPCRAPGRGRAAATRRSPAPGTA-----------------------RGSPAGVERAGGAT 139 P R +G + PG A G P G Sbjct: 1058 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1117 Query: 140 AASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP----GSAALPRSPSSSRRWAAMPGPG 195 +AG P R P G G+R P G LP PS + GP Sbjct: 1118 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP-GPSGEKGETGDVGPM 1176 Query: 196 APRPGAPG-TWPVGFAVA----APPAAAASVAPP----PPAVAGAPAAAFRGWVAAP 243 P PG PG P G A PP ++ PP P +G+P V P Sbjct: 1177 GP-PGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGP 1232 Score = 43.5 bits (101), Expect = 2e-04 Identities = 66/231 (28%), Positives = 77/231 (33%), Gaps = 43/231 (18%) Query: 44 GPAGARRGHSPPTVAPAASA-----------GSQEHPGAGGP---LCFPARSAAWGPPAR 89 GP G + G + PT P G +PG GP L FP A G + Sbjct: 769 GPEGPK-GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGE--K 825 Query: 90 ASRAAGRRAGPAG---PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146 +R ++GP G P RG AT +S A GT+ G G Sbjct: 826 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD----------------GP 869 Query: 147 RSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-T 204 P R LP P G PG LP P R G P PG PG Sbjct: 870 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGP-PGPPGVV 927 Query: 205 WPVGFA-VAAPPAAAASVAPP-PPAVAGAPAAAFR-GWVAAPDPGCTPGTE 252 P G A P PP PP G P A + G P P PG + Sbjct: 928 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD 978 Score = 39.7 bits (91), Expect = 0.003 Identities = 52/199 (26%), Positives = 60/199 (30%), Gaps = 48/199 (24%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G R PA S GS+ G G P A G + GP GP Sbjct: 1315 GPLGKR--------GPAGSPGSEGRQGGKGAKGDPGAIGAPG-----------KTGPVGP 1355 Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163 A P P RG P V + G A AG P PP G Sbjct: 1356 ----------AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRG 1402 Query: 164 GAGSRALR----------------RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207 AG++ + G LP S + M PGA P PG P Sbjct: 1403 DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1462 Query: 208 GFAVAAPPAAAASVAPPPP 226 A P A + P P Sbjct: 1463 LPGPAGPKGAKGATGPGGP 1481 Score = 38.9 bits (89), Expect = 0.004 Identities = 40/159 (25%), Positives = 50/159 (31%), Gaps = 17/159 (10%) Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112 +P P AG PG G P G P +A GP GPP RG Sbjct: 1346 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP--PGPVGPPGLPGLRGD 1403 Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172 A A +G P + G G R +P + P G G+ Sbjct: 1404 AGAKGE-------KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1456 Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPR--------PGAPG 203 PG P+ + GPG P+ PG PG Sbjct: 1457 PGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1495 Score = 33.5 bits (75), Expect = 0.19 Identities = 55/201 (27%), Positives = 65/201 (32%), Gaps = 50/201 (24%) Query: 42 TLGPAGARRGHSPPTVAPAAS--AGSQEHPG-------AGGPLCFPARSAAWGPPARASR 92 T G G + PP AP AG + PG AGGP GPP A Sbjct: 959 TAGKEGTKGDPGPPG-APGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGS 1016 Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152 R A +G P PGR P P +G P +AG + VP Sbjct: 1017 PGERGAAGSGGPIGPPGR---------PGP---QGPP------------GAAGEKGVPGE 1052 Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP----------RPGAP 202 + P G T + PG A P + PG PG P Sbjct: 1053 K--GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPP 1110 Query: 203 GTWPVGFAVAAPPAAAASVAP 223 G P+G V P AA A P Sbjct: 1111 G--PIG-PVGQPGAAGADGEP 1128 Score = 33.1 bits (74), Expect = 0.24 Identities = 50/193 (25%), Positives = 60/193 (31%), Gaps = 23/193 (11%) Query: 64 GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRA-GPAGPPCRAPGRGRAAATRRSPAP 122 G + G GPL P G R G GPP +A RGRA A Sbjct: 490 GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGA------- 542 Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182 ARG P G G +P LP G G++ L P R Sbjct: 543 DGARGMP------GDPGVKGDRGFDGLPG--LPGEKGHRG-DTGAQGLPGPPGEDGERGD 593 Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 242 +PG PR P G + PP P P + P +G Sbjct: 594 DGEIGPRGLPGESGPRGLLGPKGPPG--IPGPPGVRGMDGPQGPKGSLGP----QGEPGP 647 Query: 243 PDPGCTPGTENAP 255 P TPGT+ P Sbjct: 648 PGQQGTPGTQGLP 660 >gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] Length = 680 Score = 52.4 bits (124), Expect = 4e-07 Identities = 70/238 (29%), Positives = 80/238 (33%), Gaps = 41/238 (17%) Query: 44 GPAGARRGHSPPTVAPA----ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAG 99 GPAG R GH P+ P S G Q PG GP P SA P G Sbjct: 66 GPAGPR-GHPGPSGPPGKPGYGSPGLQGEPGLPGP---PGPSAVGKPGVPGLPGKPGERG 121 Query: 100 PAGP-----PCRAPGRGRAAATRRSPAPGTARGSPAGVE---RAGGATAASSAGTRSVPA 151 P GP P PG R P P G PAG+ + G + G R P Sbjct: 122 PYGPKGDVGPAGLPG------PRGPPGPPGIPG-PAGISVPGKPGQQGPTGAPGPRGFPG 174 Query: 152 RRLPPPCGGTSLGAGSR---ALRRPGSAALPRSPSSSRRWAAMPGPGAPR----PGAPG- 203 + P G + G A RPG LP P + PG G PG PG Sbjct: 175 EKGAPGVPGMNGQKGEMGYGAPGRPGERGLP-GPQGPTGPSGPPGVGKRGENGVPGQPGI 233 Query: 204 TWPVGFAVAAPPAAAASVAPP----PPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 GF P + PP PP G G AP PGT+ P + Sbjct: 234 KGDRGF-----PGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGA 286 Score = 48.9 bits (115), Expect = 4e-06 Identities = 56/225 (24%), Positives = 69/225 (30%), Gaps = 18/225 (8%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G P ++ G Q GA GP FP A G P + G G Sbjct: 139 GPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGR 198 Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR---LPPPCGG 160 P G T S PG + GV G G R P PP G Sbjct: 199 PGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGI-----KGDRGFPGEMGPIGPPGPQG 253 Query: 161 TSLGAGSRALRRPGSAALPRSPS--SSRRWAAMPG-------PGAPRPGAPGTWPVGFAV 211 G + +PG+A P P ++ PG PG +PG PG Sbjct: 254 PPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPA 313 Query: 212 AAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGTENAP 255 P A P + G P G + P PG+ P Sbjct: 314 GLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLP 358 Score = 47.4 bits (111), Expect = 1e-05 Identities = 56/208 (26%), Positives = 69/208 (33%), Gaps = 27/208 (12%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G G + P P A G + PG+ G +P + GP GP G Sbjct: 359 GPKG-ETGPAGPAGYPGAK-GERGSPGSDGKPGYPGKPGLDGPKGNPG-----LPGPKGD 411 Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTR---------SVPARRL 154 PG G P A+G P AG A GTR P + Sbjct: 412 ----PGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKG 467 Query: 155 PPPCGGT--SLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG--TWPVGFA 210 P G G ++ L P P P +PGP P PG PG P GF Sbjct: 468 DPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGP-PGPPGQAVMPEGFI 526 Query: 211 VAA--PPAAAASVAPPPPAVAGAPAAAF 236 A P + + V G P +AF Sbjct: 527 KAGQRPSLSGTPLVSANQGVTGMPVSAF 554 Score = 41.6 bits (96), Expect = 7e-04 Identities = 60/235 (25%), Positives = 70/235 (29%), Gaps = 26/235 (11%) Query: 43 LGPAGARRGHSPP------TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS----- 91 +GP G PP + +AG+ PG G P GPP Sbjct: 243 MGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPG 302 Query: 92 --RAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSV 149 G R GPAG P +G PG G P + G S G Sbjct: 303 LPGLKGER-GPAGLPGGPGAKGEQGPAGLPGKPGLT-GPPGNMGPQGPKGIPGSHGLPGP 360 Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP-GAPGT-WPV 207 P G G R PGS P P PG P P G PG P Sbjct: 361 KGETGPAGPAGYPGAKGERG--SPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPP 418 Query: 208 GFAVAAPPAAAASV-----APPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 G PA A + P G P RG + P PG++ P S Sbjct: 419 GLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGT--RGPIGPPGIPGFPGSKGDPGS 471 Score = 32.7 bits (73), Expect = 0.32 Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 32/168 (19%) Query: 43 LGPAGARR--GHSPPTVAPAASAGSQEHPGAGGPLC------FPARSA---AWGPPARAS 91 +GPAGA+ GH+ A G+ PG GP+ FP + GPP A Sbjct: 424 VGPAGAKGMPGHN----GEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAG 479 Query: 92 RAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151 A GP GPP PG + P P G P G AG R Sbjct: 480 IATKGLNGPTGPP-GPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFI---KAGQR---- 531 Query: 152 RRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP 199 P GT L + ++ G +P S + A P G P P Sbjct: 532 ----PSLSGTPLVSANQ-----GVTGMPVSAFTVILSKAYPAIGTPIP 570 >gi|4758392 forkhead box D1 [Homo sapiens] Length = 465 Score = 52.4 bits (124), Expect = 4e-07 Identities = 73/251 (29%), Positives = 93/251 (37%), Gaps = 31/251 (12%) Query: 10 RPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPAASAGSQEHP 69 R P + ++ + P+ ++ G F R +K R+ PP A A S Sbjct: 188 REPGNPGKGNYWTLDPESADMFDNGSFLRRRKRF----KRQPLLPPNAAAAESL-LLRGA 242 Query: 70 GAGGPLCFPARSAAWGPPARASRAAGRRAGPAG-------PPCRAPGRGRAAATRRSPAP 122 GA G PA +AA PPA GP G PP P AAA + A Sbjct: 243 GAAGGAGDPAAAAALFPPAPPPPPHAYGYGPYGCGYGLQLPPYAPPSALFAAAAAAAAAA 302 Query: 123 GTARGSPAGVERAGGATAA---SSAGTRSVP-ARRLPPPCGGTSLGAGSRALRRPGSAAL 178 SP GA A ++ G R P LP P ++ AG PG++AL Sbjct: 303 AFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAGG-----PGASAL 357 Query: 179 PRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRG 238 RSP S + + G P A A AA AAAA +P P VA PA G Sbjct: 358 ARSPFSIE--SIIGGSLGPAAAA--------AAAAQAAAAAQASPSPSPVAAPPAPGSSG 407 Query: 239 WVAAPDPGCTP 249 A P Sbjct: 408 GGCAAQAAVGP 418 Score = 43.1 bits (100), Expect = 2e-04 Identities = 56/200 (28%), Positives = 72/200 (36%), Gaps = 16/200 (8%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-----ARASRAAGRRA 98 G A PP P A G G L P + PP A A+ AA Sbjct: 249 GDPAAAAALFPPAPPPPPHAYGYGPYGCGYGLQLPP----YAPPSALFAAAAAAAAAAAF 304 Query: 99 GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGG--ATAASSAGTRSVPARRLP- 155 P PP P G AA R+ R P G G A+AA + G + R P Sbjct: 305 HPHSPPPPPPPHGAAAELARTAFG--YRPHPLGAALPGPLPASAAKAGGPGASALARSPF 362 Query: 156 --PPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAA 213 G SLG + A +AA ++ S AA P PG+ G VG A A Sbjct: 363 SIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAAL 422 Query: 214 PPAAAASVAPPPPAVAGAPA 233 + A+ A +V+ + A Sbjct: 423 TRSLVAAAAAAASSVSSSAA 442 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 52.0 bits (123), Expect = 5e-07 Identities = 66/226 (29%), Positives = 73/226 (32%), Gaps = 39/226 (17%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G PP PA + G Q G G P S GP GP GP Sbjct: 201 GPMGPMGPRGPP--GPAGAPGPQGFQGNPGEPGEPGVSGPMGP-----------RGPPGP 247 Query: 104 PCRAPGRGRA-----AATRRSPAPGTARGSPA-----GVERAGGAT----AASSAGTRSV 149 P + G A A R P P ARG P GV+ G A AG V Sbjct: 248 PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV 307 Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGF 209 P G+ G R L P + +R PGP P PG PVG Sbjct: 308 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP----PG--PVG- 360 Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255 PA P A A RG A P PGT +P Sbjct: 361 -----PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 401 Score = 52.0 bits (123), Expect = 5e-07 Identities = 65/228 (28%), Positives = 74/228 (32%), Gaps = 36/228 (15%) Query: 44 GPAGARRGHSPP-------TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPA-RASRAAG 95 GP G R PP AG + PG G FP G R Sbjct: 237 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD 296 Query: 96 RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155 G AG P G + SP P RG P R G A AA + G P P Sbjct: 297 GAKGEAGAP-GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 355 Query: 156 P----PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGAPRP----GAPGTWP 206 P P GG A G R P ++ PG PG+P P G PGT Sbjct: 356 PGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 414 Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENA 254 + P A S P +AGAP P P PG + A Sbjct: 415 I-------PGAKGSAG--APGIAGAP--------GFPGPRGPPGPQGA 445 Score = 48.1 bits (113), Expect = 7e-06 Identities = 67/228 (29%), Positives = 77/228 (33%), Gaps = 27/228 (11%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 G G PP PA AG + GA GP F GPP G + G G Sbjct: 633 GKDGETGAAGPP--GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE-----GGKPGDQGV 685 Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163 P A G PG RGSP G + GT P G Sbjct: 686 PGEAGAPGLVGPRGERGFPG-ERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG 744 Query: 164 GAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAP-RPGAPG-TWPVGFAVAAPPAAAAS 220 G + + AA P R GP GAP + G G T P+G PP A + Sbjct: 745 PPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG-----PPGPAGA 799 Query: 221 ------VAPPPPA-VAGAPAA-AFRGWVAAPDP---GCTPGTENAPAS 257 V PP PA AGA A RG P P PG + P + Sbjct: 800 NGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 847 Score = 48.1 bits (113), Expect = 7e-06 Identities = 68/246 (27%), Positives = 80/246 (32%), Gaps = 42/246 (17%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR--ASRAAGRRA--G 99 GP+GA P +A G PG G FP G P + A A+G R G Sbjct: 963 GPSGAEGPPGPQGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG 1020 Query: 100 PAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCG 159 P GPP G A R +PG A G P AG G P PP Sbjct: 1021 PVGPPGLT---GPAGEPGREGSPG-ADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1076 Query: 160 GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR--------------------- 198 G + G + R A P PS + GP PR Sbjct: 1077 GPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFT 1136 Query: 199 -----PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGA---PAAAFRGWVAAPDPGCTPG 250 PG PG P G A+ PA + PP V + A G + P P G Sbjct: 1137 GLQGLPGPPG--PSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSG 1194 Query: 251 TENAPA 256 E PA Sbjct: 1195 -ETGPA 1199 Score = 44.7 bits (104), Expect = 8e-05 Identities = 59/202 (29%), Positives = 70/202 (34%), Gaps = 22/202 (10%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GPAGA +P T + GS PG G FP GP + G G Sbjct: 402 GPAGA--SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK--GQTGE 457 Query: 104 PCRAPGRGRAAATRRSPAPGTARGSP--AGVE-------RAGGATAASSAGTRSVPARRL 154 P A +G + P P +G+P AG E GG G R P R Sbjct: 458 PGIAGFKGEQGP-KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRG 516 Query: 155 PPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGA----PRPGAPGTWPVGF 209 P G + G+ R P A P+ + PG PGA RPG G P G Sbjct: 517 FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG--PQG- 573 Query: 210 AVAAPPAAAASVAPPPPAVAGA 231 V A P PP GA Sbjct: 574 KVGPSGAPGEDGRPGPPGPQGA 595 Score = 44.7 bits (104), Expect = 8e-05 Identities = 62/220 (28%), Positives = 69/220 (31%), Gaps = 37/220 (16%) Query: 44 GPAGARRGHSPPTVAPAASA-GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102 G G+ PP AA G + GA G A GPP GPAG Sbjct: 1035 GREGSPGADGPPGRDGAAGVKGDRGETGAVG------APGAPGPPG--------SPGPAG 1080 Query: 103 PPCRAPGRGRAAA--TRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR------- 153 P + RG A A P ARG G A G R + R Sbjct: 1081 PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG 1140 Query: 154 LPPPCG-----GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVG 208 LP P G G S AG R P P + GP PR + T P G Sbjct: 1141 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG 1200 Query: 209 FAVAAPPAAAASVAPPPPAVAGAPAAAFRGW---VAAPDP 245 PP PP P G +AF G PDP Sbjct: 1201 -----PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1235 Score = 43.9 bits (102), Expect = 1e-04 Identities = 71/261 (27%), Positives = 87/261 (33%), Gaps = 57/261 (21%) Query: 44 GPAGARR--GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAA------WGPPARASRAAG 95 GP G R G P AP G G GP+ P + A GPP A A Sbjct: 762 GPKGDRGDVGEKGPEGAPGKDGGR----GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 817 Query: 96 RRA----GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151 R A G GPP A G A PG A+G + G A A G P Sbjct: 818 RGAPGERGETGPPGPA---GFAGPPGADGQPG-AKGEQGEAGQKGDAGAPGPQGPSGAPG 873 Query: 152 RRLPPPCGGTSLGAGSRALRRPGSAALPRS-----PSSSRRWAAMPGPGAPR-----PGA 201 + P G G++ PG+ P + P S PGP P GA Sbjct: 874 PQGPTGVTGPKGARGAQG--PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGA 931 Query: 202 PG-TWPVGFA-------VAAPP---------AAAASVAPPPP-------AVAGAPA-AAF 236 G + P G A A PP + + PP P + G P Sbjct: 932 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991 Query: 237 RGWVAAPDPGCTPGTENAPAS 257 RG+ P P PG + AP + Sbjct: 992 RGFPGLPGPSGEPGKQGAPGA 1012 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 52.0 bits (123), Expect = 5e-07 Identities = 66/226 (29%), Positives = 73/226 (32%), Gaps = 39/226 (17%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GP G PP PA + G Q G G P S GP GP GP Sbjct: 132 GPMGPMGPRGPP--GPAGAPGPQGFQGNPGEPGEPGVSGPMGP-----------RGPPGP 178 Query: 104 PCRAPGRGRA-----AATRRSPAPGTARGSPA-----GVERAGGAT----AASSAGTRSV 149 P + G A A R P P ARG P GV+ G A AG V Sbjct: 179 PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV 238 Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGF 209 P G+ G R L P + +R PGP P PG PVG Sbjct: 239 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP----PG--PVG- 291 Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255 PA P A A RG A P PGT +P Sbjct: 292 -----PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 332 Score = 52.0 bits (123), Expect = 5e-07 Identities = 65/228 (28%), Positives = 74/228 (32%), Gaps = 36/228 (15%) Query: 44 GPAGARRGHSPP-------TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPA-RASRAAG 95 GP G R PP AG + PG G FP G R Sbjct: 168 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD 227 Query: 96 RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155 G AG P G + SP P RG P R G A AA + G P P Sbjct: 228 GAKGEAGAP-GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 286 Query: 156 P----PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGAPRP----GAPGTWP 206 P P GG A G R P ++ PG PG+P P G PGT Sbjct: 287 PGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 345 Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENA 254 + P A S P +AGAP P P PG + A Sbjct: 346 I-------PGAKGSAG--APGIAGAP--------GFPGPRGPPGPQGA 376 Score = 48.1 bits (113), Expect = 7e-06 Identities = 67/228 (29%), Positives = 77/228 (33%), Gaps = 27/228 (11%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 G G PP PA AG + GA GP F GPP G + G G Sbjct: 564 GKDGETGAAGPP--GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE-----GGKPGDQGV 616 Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163 P A G PG RGSP G + GT P G Sbjct: 617 PGEAGAPGLVGPRGERGFPG-ERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG 675 Query: 164 GAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAP-RPGAPG-TWPVGFAVAAPPAAAAS 220 G + + AA P R GP GAP + G G T P+G PP A + Sbjct: 676 PPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG-----PPGPAGA 730 Query: 221 ------VAPPPPA-VAGAPAA-AFRGWVAAPDP---GCTPGTENAPAS 257 V PP PA AGA A RG P P PG + P + Sbjct: 731 NGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 778 Score = 48.1 bits (113), Expect = 7e-06 Identities = 68/246 (27%), Positives = 80/246 (32%), Gaps = 42/246 (17%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR--ASRAAGRRA--G 99 GP+GA P +A G PG G FP G P + A A+G R G Sbjct: 894 GPSGAEGPPGPQGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG 951 Query: 100 PAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCG 159 P GPP G A R +PG A G P AG G P PP Sbjct: 952 PVGPPGLT---GPAGEPGREGSPG-ADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1007 Query: 160 GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR--------------------- 198 G + G + R A P PS + GP PR Sbjct: 1008 GPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFT 1067 Query: 199 -----PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGA---PAAAFRGWVAAPDPGCTPG 250 PG PG P G A+ PA + PP V + A G + P P G Sbjct: 1068 GLQGLPGPPG--PSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSG 1125 Query: 251 TENAPA 256 E PA Sbjct: 1126 -ETGPA 1130 Score = 44.7 bits (104), Expect = 8e-05 Identities = 59/202 (29%), Positives = 70/202 (34%), Gaps = 22/202 (10%) Query: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103 GPAGA +P T + GS PG G FP GP + G G Sbjct: 333 GPAGA--SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK--GQTGE 388 Query: 104 PCRAPGRGRAAATRRSPAPGTARGSP--AGVE-------RAGGATAASSAGTRSVPARRL 154 P A +G + P P +G+P AG E GG G R P R Sbjct: 389 PGIAGFKGEQGP-KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRG 447 Query: 155 PPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGA----PRPGAPGTWPVGF 209 P G + G+ R P A P+ + PG PGA RPG G P G Sbjct: 448 FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG--PQG- 504 Query: 210 AVAAPPAAAASVAPPPPAVAGA 231 V A P PP GA Sbjct: 505 KVGPSGAPGEDGRPGPPGPQGA 526 Score = 44.7 bits (104), Expect = 8e-05 Identities = 62/220 (28%), Positives = 69/220 (31%), Gaps = 37/220 (16%) Query: 44 GPAGARRGHSPPTVAPAASA-GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102 G G+ PP AA G + GA G A GPP GPAG Sbjct: 966 GREGSPGADGPPGRDGAAGVKGDRGETGAVG------APGAPGPPG--------SPGPAG 1011 Query: 103 PPCRAPGRGRAAA--TRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR------- 153 P + RG A A P ARG G A G R + R Sbjct: 1012 PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG 1071 Query: 154 LPPPCG-----GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVG 208 LP P G G S AG R P P + GP PR + T P G Sbjct: 1072 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG 1131 Query: 209 FAVAAPPAAAASVAPPPPAVAGAPAAAFRGW---VAAPDP 245 PP PP P G +AF G PDP Sbjct: 1132 -----PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1166 Score = 43.9 bits (102), Expect = 1e-04 Identities = 71/261 (27%), Positives = 87/261 (33%), Gaps = 57/261 (21%) Query: 44 GPAGARR--GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAA------WGPPARASRAAG 95 GP G R G P AP G G GP+ P + A GPP A A Sbjct: 693 GPKGDRGDVGEKGPEGAPGKDGGR----GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 748 Query: 96 RRA----GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151 R A G GPP A G A PG A+G + G A A G P Sbjct: 749 RGAPGERGETGPPGPA---GFAGPPGADGQPG-AKGEQGEAGQKGDAGAPGPQGPSGAPG 804 Query: 152 RRLPPPCGGTSLGAGSRALRRPGSAALPRS-----PSSSRRWAAMPGPGAPR-----PGA 201 + P G G++ PG+ P + P S PGP P GA Sbjct: 805 PQGPTGVTGPKGARGAQG--PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGA 862 Query: 202 PG-TWPVGFA-------VAAPP---------AAAASVAPPPP-------AVAGAPA-AAF 236 G + P G A A PP + + PP P + G P Sbjct: 863 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 922 Query: 237 RGWVAAPDPGCTPGTENAPAS 257 RG+ P P PG + AP + Sbjct: 923 RGFPGLPGPSGEPGKQGAPGA 943 >gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] Length = 261 Score = 52.0 bits (123), Expect = 5e-07 Identities = 60/182 (32%), Positives = 64/182 (35%), Gaps = 28/182 (15%) Query: 47 GARRGHSPPTVAPA-----ASAGSQEHPGAGGPLCFPARS--AAWGPPARASRAAGRRAG 99 GARRG P AP + GS P P C P R AA P R R R Sbjct: 46 GARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRR 105 Query: 100 PAGPPCR----------APGRGRAAATRRSPAPGTAR----GSPAGVERAGGATAASSAG 145 P G P APGR A A APG AR G G GG + G Sbjct: 106 PGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGG 165 Query: 146 TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALP----RSPSSSRRW--AAMPGPGAPRP 199 T P R P G RA G+AA P P S A GP +PR Sbjct: 166 TVG-PGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRD 224 Query: 200 GA 201 GA Sbjct: 225 GA 226 Score = 34.3 bits (77), Expect = 0.11 Identities = 41/132 (31%), Positives = 49/132 (37%), Gaps = 36/132 (27%) Query: 48 ARRGHSPPTVAPA---ASAGSQEHPGA-----GGPLCFPA----RSAAWGPPARASRAAG 95 A G + P VA A +G + HPG GG P +A G P R RAA Sbjct: 131 ALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAE 190 Query: 96 RRAGPAGPPCRAPG-----RGRAAATR--RSPAPGTARGS---PAGVERAGGATAASSAG 145 R A PP G G A T+ +SP G G+ P V +GG Sbjct: 191 TRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGG-------- 242 Query: 146 TRSVPARRLPPP 157 R LPPP Sbjct: 243 ------RPLPPP 248 >gi|55750053 atrophin-1 [Homo sapiens] Length = 1190 Score = 52.0 bits (123), Expect = 5e-07 Identities = 63/219 (28%), Positives = 78/219 (35%), Gaps = 44/219 (20%) Query: 51 GHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102 G PP P G H P G +P A PP S+ + +AGP G Sbjct: 508 GPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPH--SQVSYSQAGPNG 565 Query: 103 PPCRA-------------------PGRGRAAATRRSPAPGTARGSPAGVERAGGATAASS 143 PP + P +G A P T S A + A+S Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSP 625 Query: 144 AG--TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSR-------RWAAMP-G 193 AG T S P PPP G + G+ P P SP S R R + P G Sbjct: 626 AGYKTASPPG---PPPYGKRAPSPGAYKTATPPGYK-PGSPPSFRTGTPPGYRGTSPPAG 681 Query: 194 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232 PG +PG+P P G A P+ S+ PPP A A P Sbjct: 682 PGTFKPGSPTVGP-GPLPPAGPSGLPSLPPPPAAPASGP 719 Score = 43.5 bits (101), Expect = 2e-04 Identities = 47/195 (24%), Positives = 66/195 (33%), Gaps = 22/195 (11%) Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112 +PPT P G P A P FP + PP A P PG G Sbjct: 270 APPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASP-------PGLG- 321 Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172 P PG A + GG G P+ PP S A + +R Sbjct: 322 -----AQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPP---ASSSAPAPPMRF 373 Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPRPGAPG--TWPVGFAVAAPPAAAASVAPPPPAVAG 230 P S++ S ++S ++ +P P + ++P F PP + SV+ PP Sbjct: 374 PYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSF----PPPTSLSVSNQPPKYTQ 429 Query: 231 APAAAFRGWVAAPDP 245 + W P P Sbjct: 430 PSLPSQAVWSQGPPP 444 Score = 31.6 bits (70), Expect = 0.71 Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 15/113 (13%) Query: 154 LPPPCGGTSLG-AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWP------ 206 LPPP S AG S+ S S + P P GAP +P Sbjct: 549 LPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVT 608 Query: 207 --------VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251 V VA+ PA + +PP P G A + + A PG PG+ Sbjct: 609 TSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGS 661 Score = 30.0 bits (66), Expect = 2.1 Identities = 42/158 (26%), Positives = 56/158 (35%), Gaps = 34/158 (21%) Query: 128 SPAGVERAGGATAASSAGTRSVPARRL-PPPCGGTSLGAGSRALRRPGSAA--------- 177 SP VE + SS+G PAR PPP S R+P ++ Sbjct: 137 SPGSVEN----DSDSSSGLSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT 192 Query: 178 ---LPRSPSSSRRWAAMPGPGAPRPGA-PGTWPVGFAVAAPP------AAAASVA----- 222 P P +SR + A PG P P PG G ++ PP AA+SV Sbjct: 193 GYHAPMEPPTSRMFQAPPGAPPPHPQLYPG--GTGGVLSGPPMGPKGGGAASSVGGPNGG 250 Query: 223 ---PPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 PPP ++ G P G N P++ Sbjct: 251 KQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSA 288 Score = 29.6 bits (65), Expect = 2.7 Identities = 56/219 (25%), Positives = 71/219 (32%), Gaps = 51/219 (23%) Query: 43 LGPAGARRGHSPPTVAPAAS----------AGSQEHPGAGGPLCFPARSAAWGPPARASR 92 L AR H PP P+ A + HP A PP Sbjct: 151 LSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT----GYHAPMEPPTSRMF 206 Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152 A A P P G G G G P G + GG A+S G + Sbjct: 207 QAPPGAPPPHPQLYPGGTG-----------GVLSGPPMGPK--GGGAASSVGGPNG--GK 251 Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVA 212 + PPP S+ + S A P P ++ P G P AP P F Sbjct: 252 QHPPPTTPISVSSSG------ASGAPPTKPPTT------PVGGGNLPSAPP--PANF--- 294 Query: 213 APPAAAASVAPPPPAV--AGAPAAAFRGWVAAPDPGCTP 249 P ++ PPPPA+ +A+ G A P PG P Sbjct: 295 --PHVTPNL-PPPPALRPLNNASASPPGLGAQPLPGHLP 330 >gi|55750041 atrophin-1 [Homo sapiens] Length = 1190 Score = 52.0 bits (123), Expect = 5e-07 Identities = 63/219 (28%), Positives = 78/219 (35%), Gaps = 44/219 (20%) Query: 51 GHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102 G PP P G H P G +P A PP S+ + +AGP G Sbjct: 508 GPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPH--SQVSYSQAGPNG 565 Query: 103 PPCRA-------------------PGRGRAAATRRSPAPGTARGSPAGVERAGGATAASS 143 PP + P +G A P T S A + A+S Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSP 625 Query: 144 AG--TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSR-------RWAAMP-G 193 AG T S P PPP G + G+ P P SP S R R + P G Sbjct: 626 AGYKTASPPG---PPPYGKRAPSPGAYKTATPPGYK-PGSPPSFRTGTPPGYRGTSPPAG 681 Query: 194 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232 PG +PG+P P G A P+ S+ PPP A A P Sbjct: 682 PGTFKPGSPTVGP-GPLPPAGPSGLPSLPPPPAAPASGP 719 Score = 43.5 bits (101), Expect = 2e-04 Identities = 47/195 (24%), Positives = 66/195 (33%), Gaps = 22/195 (11%) Query: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112 +PPT P G P A P FP + PP A P PG G Sbjct: 270 APPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASP-------PGLG- 321 Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172 P PG A + GG G P+ PP S A + +R Sbjct: 322 -----AQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPP---ASSSAPAPPMRF 373 Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPRPGAPG--TWPVGFAVAAPPAAAASVAPPPPAVAG 230 P S++ S ++S ++ +P P + ++P F PP + SV+ PP Sbjct: 374 PYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSF----PPPTSLSVSNQPPKYTQ 429 Query: 231 APAAAFRGWVAAPDP 245 + W P P Sbjct: 430 PSLPSQAVWSQGPPP 444 Score = 31.6 bits (70), Expect = 0.71 Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 15/113 (13%) Query: 154 LPPPCGGTSLG-AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWP------ 206 LPPP S AG S+ S S + P P GAP +P Sbjct: 549 LPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVT 608 Query: 207 --------VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251 V VA+ PA + +PP P G A + + A PG PG+ Sbjct: 609 TSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGS 661 Score = 30.0 bits (66), Expect = 2.1 Identities = 42/158 (26%), Positives = 56/158 (35%), Gaps = 34/158 (21%) Query: 128 SPAGVERAGGATAASSAGTRSVPARRL-PPPCGGTSLGAGSRALRRPGSAA--------- 177 SP VE + SS+G PAR PPP S R+P ++ Sbjct: 137 SPGSVEN----DSDSSSGLSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT 192 Query: 178 ---LPRSPSSSRRWAAMPGPGAPRPGA-PGTWPVGFAVAAPP------AAAASVA----- 222 P P +SR + A PG P P PG G ++ PP AA+SV Sbjct: 193 GYHAPMEPPTSRMFQAPPGAPPPHPQLYPG--GTGGVLSGPPMGPKGGGAASSVGGPNGG 250 Query: 223 ---PPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 PPP ++ G P G N P++ Sbjct: 251 KQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSA 288 Score = 29.6 bits (65), Expect = 2.7 Identities = 56/219 (25%), Positives = 71/219 (32%), Gaps = 51/219 (23%) Query: 43 LGPAGARRGHSPPTVAPAAS----------AGSQEHPGAGGPLCFPARSAAWGPPARASR 92 L AR H PP P+ A + HP A PP Sbjct: 151 LSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT----GYHAPMEPPTSRMF 206 Query: 93 AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152 A A P P G G G G P G + GG A+S G + Sbjct: 207 QAPPGAPPPHPQLYPGGTG-----------GVLSGPPMGPK--GGGAASSVGGPNG--GK 251 Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVA 212 + PPP S+ + S A P P ++ P G P AP P F Sbjct: 252 QHPPPTTPISVSSSG------ASGAPPTKPPTT------PVGGGNLPSAPP--PANF--- 294 Query: 213 APPAAAASVAPPPPAV--AGAPAAAFRGWVAAPDPGCTP 249 P ++ PPPPA+ +A+ G A P PG P Sbjct: 295 --PHVTPNL-PPPPALRPLNNASASPPGLGAQPLPGHLP 330 >gi|4826998 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Homo sapiens] Length = 707 Score = 52.0 bits (123), Expect = 5e-07 Identities = 56/232 (24%), Positives = 70/232 (30%), Gaps = 38/232 (16%) Query: 19 DFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFP 78 DFR+ P + Q +G +GP + G PP P Q+ P P P Sbjct: 30 DFRSPPPGMGLNQNRG-------PMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQP 82 Query: 79 ARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGA 138 PP + P + ++ P P P + G A Sbjct: 83 ------------------------PPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPA 118 Query: 139 TAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR 198 SA S A PP G G+G PG P P+ + P P P Sbjct: 119 PGVGSAPPASSSAPPATPPTSGAPPGSG------PGPTPTP-PPAVTSAPPGAPPPTPPS 171 Query: 199 PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250 G P T P PPAA P P G P PG PG Sbjct: 172 SGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPG 223 Score = 41.6 bits (96), Expect = 7e-04 Identities = 38/130 (29%), Positives = 51/130 (39%), Gaps = 18/130 (13%) Query: 43 LGPAGARRGHSPPTVAPAASAGSQEHPGAG-GPLCFP---ARSAAWGPPARASRAAG--- 95 +G A +PP P + A PG+G GP P SA G P ++G Sbjct: 121 VGSAPPASSSAPPATPPTSGAP----PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPT 176 Query: 96 ---RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGS--PAGVERAGGATAASSAGTRSVP 150 + GP PP PG G ++ P PG +G P G + GG ++ G P Sbjct: 177 TPPQAGGPPPPPAAVPGPG--PGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPP 234 Query: 151 ARRLPPPCGG 160 R P GG Sbjct: 235 HRGGGEPRGG 244 Score = 37.0 bits (84), Expect = 0.017 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 11/77 (14%) Query: 179 PRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRG 238 P P S + GPG P PG V + P A++S P P +GAP + G Sbjct: 100 PPPPQDSSKPVVAQGPG-PAPG----------VGSAPPASSSAPPATPPTSGAPPGSGPG 148 Query: 239 WVAAPDPGCTPGTENAP 255 P P T AP Sbjct: 149 PTPTPPPAVTSAPPGAP 165 Score = 29.3 bits (64), Expect = 3.5 Identities = 44/169 (26%), Positives = 53/169 (31%), Gaps = 29/169 (17%) Query: 92 RAAGRRAGPAGPPCRAPGRGRAAATR-RSPAPGTARGSPAGVERAGGATAASSAGTRSVP 150 R R G G R G GR RSP PG G G +S P Sbjct: 5 RFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPG--------QSGP 56 Query: 151 ARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGA----PRPGAPGTWP 206 +PPP + ++P P + P P P P + P Sbjct: 57 KPPIPPP-------PPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKP 109 Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255 V VA P A V PPA + AP A P G PG+ P Sbjct: 110 V---VAQGPGPAPGVGSAPPASSSAPPA------TPPTSGAPPGSGPGP 149 >gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] Length = 411 Score = 52.0 bits (123), Expect = 5e-07 Identities = 63/232 (27%), Positives = 83/232 (35%), Gaps = 24/232 (10%) Query: 45 PAGARRGHSPPTVAPAASAGSQEH------PGAGGPLCFPARSAAWGPPA-RASRAAGRR 97 P RG + PAASA + + P A +C + AWG P RA + Sbjct: 34 PGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTIC--SLHQAWGGPGCRAQKGIPAA 91 Query: 98 AGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPP 157 P P AP G A P PG+ G G + A G S P + +P P Sbjct: 92 LSPGPGPIPAPIPGPAQIP--GPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQ-IPGP 148 Query: 158 CGGTSLGAGSRALRRPGSAALPRS-----PSSSRRWAAMPGP-GAPRPG---APGTWPVG 208 G G S PG + P S P +PGP P PG P P+ Sbjct: 149 FRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIP 208 Query: 209 FAVAAP---PAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257 ++ P P P P ++G G ++ P+PG PG P S Sbjct: 209 GPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260 Score = 36.2 bits (82), Expect = 0.029 Identities = 58/205 (28%), Positives = 70/205 (34%), Gaps = 26/205 (12%) Query: 47 GARRGHSP-PTVAPAASAGSQEHPGAG---GPLCFPARSAAWGPPARASRAAGRRAGPAG 102 G RG P P PA G P +G GP+ P GP +G GP Sbjct: 147 GPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGP------ISGPIPGPIS 200 Query: 103 PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRL-PPPCGGT 161 P P G + P PG G G G G S P L P P G Sbjct: 201 VPIPGPIPGPISGPISGPNPGPIPGPIPGP--ISGPNPGPIPGPISGPNPGLIPGPIPGP 258 Query: 162 SLGAGSRALRRPGSAALPR-----------SPSSSRRWAAMPGPGAPRPGAPGTWPVGFA 210 G G P A +P SP R ++PG AP G PG+ P + Sbjct: 259 ISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGL-APILG-PGSGPGSGS 316 Query: 211 VAAPPAAAASVAPPPPAVAGAPAAA 235 V AP S+ P P +P A+ Sbjct: 317 VPAPIPGPGSLPAPAPLWPQSPDAS 341 Score = 33.1 bits (74), Expect = 0.24 Identities = 48/148 (32%), Positives = 58/148 (39%), Gaps = 21/148 (14%) Query: 44 GP-AGARRGHSP-PTVAPAASAGSQEHPGA-GGPLCFPARSAAWGPPARASRAAGRRAGP 100 GP +G G +P P P S +PG GP+ P GP G GP Sbjct: 209 GPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGP 268 Query: 101 AGPPCRAPGRGRAAATRRSPAPGTAR--GSPAGVERAGGATAASSAGTRSVPARRLPPPC 158 P + PG GR +PG R GS G+ G S G+ SVPA P P Sbjct: 269 IPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILG--PGSGPGSGSVPA---PIP- 322 Query: 159 GGTSLGAGSRALRRPGSAAL-PRSPSSS 185 G GS P A L P+SP +S Sbjct: 323 -----GPGS----LPAPAPLWPQSPDAS 341 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.314 0.131 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,983,635 Number of Sequences: 37866 Number of extensions: 1196600 Number of successful extensions: 17567 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 543 Number of HSP's successfully gapped in prelim test: 2164 Number of HSP's that attempted gapping in prelim test: 8060 Number of HSP's gapped (non-prelim): 7629 length of query: 257 length of database: 18,247,518 effective HSP length: 100 effective length of query: 157 effective length of database: 14,460,918 effective search space: 2270364126 effective search space used: 2270364126 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.