Guide to the Human Genome
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Search of human proteins with 239753839

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
         (257 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]           535   e-152
gi|239748402 PREDICTED: hypothetical protein [Homo sapiens]           147   9e-36
gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo ...   147   9e-36
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    64   1e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      61   8e-10
gi|134142824 forkhead box D2 [Homo sapiens]                            58   7e-09
gi|163965366 nascent polypeptide-associated complex alpha subuni...    58   7e-09
gi|117938759 GNAS complex locus XLas [Homo sapiens]                    57   2e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      57   2e-08
gi|122937321 UNC homeobox [Homo sapiens]                               57   2e-08
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap...    56   3e-08
gi|71274172 ankyrin repeat domain 56 [Homo sapiens]                    56   4e-08
gi|18641360 collectin sub-family member 12 [Homo sapiens]              55   6e-08
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     55   8e-08
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi...    54   1e-07
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       53   2e-07
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]       53   3e-07
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]       53   3e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    52   4e-07
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    52   4e-07
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    52   4e-07
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           52   4e-07
gi|4758392 forkhead box D1 [Homo sapiens]                              52   4e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    52   5e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    52   5e-07
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]         52   5e-07
gi|55750053 atrophin-1 [Homo sapiens]                                  52   5e-07
gi|55750041 atrophin-1 [Homo sapiens]                                  52   5e-07
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    52   5e-07
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]               52   5e-07

>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score =  535 bits (1377), Expect = e-152
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MAYSRQRKIRPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPA 60
           MAYSRQRKIRPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPA
Sbjct: 1   MAYSRQRKIRPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPA 60

Query: 61  ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP 120
           ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP
Sbjct: 61  ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP 120

Query: 121 APGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPR 180
           APGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPR
Sbjct: 121 APGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPR 180

Query: 181 SPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240
           SPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV
Sbjct: 181 SPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240

Query: 241 AAPDPGCTPGTENAPAS 257
           AAPDPGCTPGTENAPAS
Sbjct: 241 AAPDPGCTPGTENAPAS 257


>gi|239748402 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 67

 Score =  147 bits (371), Expect = 9e-36
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 191 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250
           MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG
Sbjct: 1   MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60

Query: 251 TENAPAS 257
           TENAPAS
Sbjct: 61  TENAPAS 67



 Score = 28.9 bits (63), Expect = 4.6
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 69  PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGT 124
           P  G P  +P   A   PPA A+  A      AG P  A  RG  AA      PGT
Sbjct: 7   PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGT 61


>gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo
           sapiens]
          Length = 67

 Score =  147 bits (371), Expect = 9e-36
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 191 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250
           MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG
Sbjct: 1   MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60

Query: 251 TENAPAS 257
           TENAPAS
Sbjct: 61  TENAPAS 67



 Score = 28.9 bits (63), Expect = 4.6
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 69  PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGT 124
           P  G P  +P   A   PPA A+  A      AG P  A  RG  AA      PGT
Sbjct: 7   PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGT 61


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 80/229 (34%), Positives = 92/229 (40%), Gaps = 36/229 (15%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GPA    G   P  AP      +  PG GGP          GPP  + R     AGPA P
Sbjct: 74  GPAAPAEG--APGAAPEPPPAGRARPGGGGP-------QRPGPP--SPRRPLVPAGPAPP 122

Query: 104 PC--RAPGRGRAAATRRSPAPGTARG----SPAG-VERAGGATAASSAGTRSVPARRL-P 155
               R P  G A +    PA          +PAG  + AG A  A+ AG    P     P
Sbjct: 123 AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGP 182

Query: 156 PPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAM--PGPGA----PRPGAPGT---WP 206
            P  G   G G+ A    GSAAL  S  ++    ++   GP A    P+P APGT    P
Sbjct: 183 GPGPGKPAGPGA-AQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTP 241

Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255
                AAPPA AA   P  PA A APAA      A P P   P T   P
Sbjct: 242 PFVGAAAPPAPAAPSPPAAPAPA-APAA------APPPPPPAPATLARP 283



 Score = 61.6 bits (148), Expect = 6e-10
 Identities = 73/242 (30%), Positives = 89/242 (36%), Gaps = 54/242 (22%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GP   RR   P   AP A+       G+ G  C P        PA A+ AAG    PAGP
Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGS-CAPV-------PAAAAVAAGPEPAPAGP 157

Query: 104 PCRAPGRGRAAATRRS---------PAPGTARGSPAG---VERAGGATAASSAGTRSVPA 151
              A   G AA   R+         P PG   G PAG    +   G+ A  ++   + PA
Sbjct: 158 ---AKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPA 214

Query: 152 RRL------------PPPCGGTSLG----AGSRALRRPGSAALPRSPSSSRRWAAMPGPG 195
             L             P   GT +      G+ A   P + + P +P+ +   AA P P 
Sbjct: 215 VSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274

Query: 196 ------APRPGAPGTWPVGFAVAAPPAAA-----ASVAPPPPAVAGAPAAAFRGWVAAPD 244
                 A  PG P   P       PPAAA     A  AP P   AG PA    G    P 
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA----GVSGQPG 330

Query: 245 PG 246
           PG
Sbjct: 331 PG 332



 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 60/207 (28%), Positives = 78/207 (37%), Gaps = 28/207 (13%)

Query: 53  SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
           +PP V  AA       P A  P   PA +A    P     A    A P G P   P    
Sbjct: 240 TPPFVGAAAPPA----PAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAP 295

Query: 113 A----------AATRRSPAPGTARGSPAGVE---RAGGATAASSAGTRSVPARRL---PP 156
           A           +   +PAP  A G PAGV      G A AA + G ++   +R+    P
Sbjct: 296 AVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAP 355

Query: 157 PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPA 216
           P   T   +G  +     +A++   P+      A+P P A  P APGT P G    A  A
Sbjct: 356 PAAQTLAASGPAST----AASMVIGPTMQ---GALPSPAAVPPPAPGT-PTGLPKGAAGA 407

Query: 217 AAASVAPPPPAVAGAPAAAFRGWVAAP 243
              S++  P A      A     V AP
Sbjct: 408 VTQSLSRTPTATTSGIRATLTPTVLAP 434



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 55/173 (31%), Positives = 59/173 (34%), Gaps = 18/173 (10%)

Query: 90  ASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSV 149
           AS A      P  P  RA   G               GSPAG   AG A  A  A     
Sbjct: 35  ASAAHHHHLAPRTPEVRAAAAGALGNH-------VVSGSPAGAAGAGPAAPAEGAPG--- 84

Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTW---P 206
            A   PPP G    G G      P S   P  P+     AA   P  P  G+ G+    P
Sbjct: 85  -AAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRP--PPEGSAGSCAPVP 141

Query: 207 VGFAVAA--PPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
              AVAA   PA A    P  PA   A A    G    P PG  PG    P +
Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGA 194


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 61.2 bits (147), Expect = 8e-10
 Identities = 68/218 (31%), Positives = 83/218 (38%), Gaps = 17/218 (7%)

Query: 44  GPAGARRGHSPP----TVAPAASAGSQEHPGAGGPLCFPA-RSAAWGPPARASRAAGRRA 98
           GPAG R  +  P        A + G+    GA G    P  R AA  P  +  R      
Sbjct: 692 GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPK 751

Query: 99  GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPP-P 157
           G  G P +   RG    T     PG A G+P     +G +  A   G R  P  R  P P
Sbjct: 752 GADGSPGKDGVRG---LTGPIGPPGPA-GAPGDKGESGPSGPAGPTGARGAPGDRGEPGP 807

Query: 158 CGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAA 217
            G         A  +PG+   P   + ++  A  PGP  P  G PG  P+G  V AP A 
Sbjct: 808 PGPAGFAGPPGADGQPGAKGEP-GDAGAKGDAGPPGPAGPA-GPPG--PIG-NVGAPGAK 862

Query: 218 AASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255
            A  +  PP   G P AA  G V  P P    G    P
Sbjct: 863 GARGSAGPPGATGFPGAA--GRVGPPGPSGNAGPPGPP 898



 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 70/218 (32%), Positives = 78/218 (35%), Gaps = 47/218 (21%)

Query: 44   GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRA---------- 93
            G  GAR    PP        G+   PGA G +  P  S   GPP     A          
Sbjct: 860  GAKGARGSAGPP--------GATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG 911

Query: 94   ----AGR--RAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATA-ASSAGT 146
                AGR    GP GPP  A  +G   A   + APGT    P G+    G        G 
Sbjct: 912  ETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTP--GPQGIAGQRGVVGLPGQRGE 969

Query: 147  RSVPARRLPPPCG-----GTSLGAGSRALRRP-GSAALPRSPSSSRRWAAMPGPGAP-RP 199
            R  P   LP P G     G S  +G R    P G   L   P  S R  A    G+P R 
Sbjct: 970  RGFPG--LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRD 1027

Query: 200  GAPG-------TWPVGFAVAAPPAAAASVAPPPPAVAG 230
            G+PG       T P G     P A  A  AP P   AG
Sbjct: 1028 GSPGAKGDRGETGPAG----PPGAPGAPGAPGPVGPAG 1061



 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 69/234 (29%), Positives = 80/234 (34%), Gaps = 49/234 (20%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAA-WGPPARASRAAGRRAGPAG 102
           GP G +    PP   PA   G +   G  GP   P       GP +R    A   AGP G
Sbjct: 452 GPVGVQ---GPP--GPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKG 506

Query: 103 PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTS 162
           P          A  R SP P   +GSP    R G A    + G    P    P P G T 
Sbjct: 507 P----------AGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGS--PGPDGKTG 554

Query: 163 LGAGSRALRRPGSAALPRSPSSSRRWAAM---PGP----GAP----RPGAPGTWPVGFAV 211
               +    RPG    P  P  +R  A +   PGP    G P      G PG  P     
Sbjct: 555 PPGPAGQDGRPG----PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP-PGAVGP 609

Query: 212 AAPPAAAASVAPPPPA----------VAGAPAAAFRGWVAAPDPGCTPGTENAP 255
           A     A +  PP PA           AG+P     G+   P P   PG    P
Sbjct: 610 AGKDGEAGAQGPPGPAGPAGERGEQGPAGSP-----GFQGLPGPAGPPGEAGKP 658



 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 68/228 (29%), Positives = 79/228 (34%), Gaps = 33/228 (14%)

Query: 54  PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRA 113
           P  + P+   G    PGA GP  F       G P  AS   G R GP GPP +    G A
Sbjct: 178 PGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPG-ASGPMGPR-GPPGPPGKNGDDGEA 235

Query: 114 A-----ATRRSPAPGTARGSP--------------AGVERA-GGATAASSAGTRSVPARR 153
                   R  P P  ARG P              +G++ A G A  A   G    P   
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN 295

Query: 154 LPPPCGGTSLGAGSRALRRPGS--AALPRSPSSSRRWAAMPGPGAPR--PGAPGTWPVGF 209
             P   G     G R   RPG+   A  R    +   A  PGP  P   PG PG   VG 
Sbjct: 296 GAPGQMGPRGLPGERG--RPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGA--VGA 351

Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
              A P      +  P  V G P     G   A  P   PG +  P +
Sbjct: 352 KGEAGPQGPRG-SEGPQGVRGEPGPP--GPAGAAGPAGNPGADGQPGA 396



 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 79/290 (27%), Positives = 86/290 (29%), Gaps = 93/290 (32%)

Query: 44  GPAGARRGHSPP-TVAPAAS---AGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAG 99
           G AG R    PP  V PA     AG+Q  PG  GP          G P           G
Sbjct: 593 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP-----G 647

Query: 100 PAGPPCRA--PGRGRAAATRRSPAPGTARG--------------SPAGVERAGGATAASS 143
           PAGPP  A  PG         +P P  ARG               PAG   A GA     
Sbjct: 648 PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDG 707

Query: 144 A----------------GTRSVPARR----LPPPCG-----------GTSLGAGSRALRR 172
           A                G + +P  R    LP P G           G+    G R L  
Sbjct: 708 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTG 767

Query: 173 PGSAALPRSPSSSRRWAAMPGPGAP-----------RPGAPGTWPVGFA----------- 210
           P     P      +  +   GP  P            PG PG  P GFA           
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG--PAGFAGPPGADGQPGA 825

Query: 211 -----------VAAPPAAAASVAPPPP-AVAGAPAAAFRGWVAAPDPGCT 248
                       A PP  A    PP P    GAP A      A P PG T
Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGP-PGAT 874



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 66/238 (27%), Positives = 77/238 (32%), Gaps = 43/238 (18%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR-----------ASR 92
           G  GA+    P    P  S G Q   G  GP   P  + A GP              A+ 
Sbjct: 347 GAVGAKGEAGPQ--GPRGSEGPQGVRGEPGP---PGPAGAAGPAGNPGADGQPGAKGANG 401

Query: 93  AAGRRAGPAGPPCRAPGRGRAAATRRSP--------APGT-----ARGSPAGVERAGGAT 139
           A G    P  P  R P   +       P        APG+     A+G P  V   G   
Sbjct: 402 APGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG 461

Query: 140 AASSAGTRSVPARRLPPPCG-----GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP 194
            A   G R   AR  P P G     G   G GSR        A P+ P+  R     PGP
Sbjct: 462 PAGEEGKRG--ARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER---GSPGP 516

Query: 195 GAPR--PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250
             P+  PG  G         A     +  +P P    G P  A  G    P P   PG
Sbjct: 517 AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPA--GQDGRPGPPGPPG 572



 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 66/226 (29%), Positives = 72/226 (31%), Gaps = 31/226 (13%)

Query: 44  GPAGARRGHSPPTV-APAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAA--GRR--- 97
           GP G R    PP        AG    PG  GP   P    A G P  A      G R   
Sbjct: 215 GPMGPRGPPGPPGKNGDDGEAGKPGRPGERGP---PGPQGARGLPGTAGLPGMKGHRGFS 271

Query: 98  --------AGPAGPPCR--APGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTR 147
                   AGPAGP     +PG   A            RG P     AG      + G  
Sbjct: 272 GLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAA 331

Query: 148 SVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAPRP-GAPGTW 205
             P    P    G     G++    P        P   R     PGP GA  P G PG  
Sbjct: 332 GPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPG-- 389

Query: 206 PVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPG 250
               A   P A  A+ A   P +AGAP     RG      PG  PG
Sbjct: 390 ----ADGQPGAKGANGA---PGIAGAPGFPGARGPSGPQGPGGPPG 428



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 57/194 (29%), Positives = 68/194 (35%), Gaps = 30/194 (15%)

Query: 53   SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGR----RAGPAGPPCRAP 108
            SP       + G +   G  GP   P    A GP   A ++  R     AGPAGP     
Sbjct: 1023 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVG 1082

Query: 109  GRGRAAAT-RRSPAPGTARGSPAGVE-RAGGATAASSAGTRSVPARRLPPPCGGTSLGAG 166
             RG A     R     T      G++   G +      G    P  + P    G S  AG
Sbjct: 1083 ARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP---SGASGPAG 1139

Query: 167  SRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG----TWPVGFAVAAPPAAAASVA 222
             R    PGSA  P     +     +PGP  P PG  G      PVG     PP       
Sbjct: 1140 PRG--PPGSAGAPGKDGLN----GLPGPIGP-PGPRGRTGDAGPVG-----PPG-----P 1182

Query: 223  PPPPAVAGAPAAAF 236
            P PP   G P+A F
Sbjct: 1183 PGPPGPPGPPSAGF 1196



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 51/174 (29%), Positives = 56/174 (32%), Gaps = 28/174 (16%)

Query: 44   GPAGARRGHSPP-TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
            GP GA      P  V PA  +G +   G  GP        A GP           AGP G
Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGP-----------AGPQG 1091

Query: 103  PPCRAPGRGRAAATRRSPAPGTA--RG-----SPAGVERAGGATAASSAGTRSVPARRLP 155
            P      RG    T      G    RG      P G   + G    S A   + P  R P
Sbjct: 1092 P------RGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGP--RGP 1143

Query: 156  PPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGF 209
            P   G     G   L  P     PR  +        PGP  P PG PG    GF
Sbjct: 1144 PGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP-PGPPGPPSAGF 1196


>gi|134142824 forkhead box D2 [Homo sapiens]
          Length = 495

 Score = 58.2 bits (139), Expect = 7e-09
 Identities = 66/214 (30%), Positives = 81/214 (37%), Gaps = 36/214 (16%)

Query: 54  PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPA-GPPCRAPGRGR 112
           P   AP        HP    P  F   +AA   P + S   GR A P  GPP  +   G 
Sbjct: 275 PAYGAPPPGPAPHPHPH---PHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGA 331

Query: 113 AAATRRSPAPGTARG-SPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALR 171
            +A   +PA G+  G  PAG+    GA    +   ++  A  L PP  GT+ G  +  LR
Sbjct: 332 GSAPAPAPASGSGPGPGPAGLPAFLGAELGCA---KAFYAASLSPPAAGTAAGLPTALLR 388

Query: 172 R-----------PGSAALPRSPSSS--------RRWAAMPGPGAPRPGAPGTWPVGFAVA 212
           +            G A   + PS S           AA PG G   PG P      FA A
Sbjct: 389 QGLKTDAGGGAGGGGAGAGQRPSFSIDHIMGHGGGGAAPPGAGEGSPGPP------FAAA 442

Query: 213 APPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPG 246
           A P   A V     A A AP A   G +    PG
Sbjct: 443 AGPGGQAQVLAMLTAPALAPVA---GHIRLSHPG 473



 Score = 36.2 bits (82), Expect = 0.029
 Identities = 31/78 (39%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 190 AMPGPGAPRPGA---PGTWPVGFAVAAPPAAAA---SVAP-----PPPAVAGAPAAAFRG 238
           A+P  GAP PG    P   P  FA AA  AAA    SV P     PPP    A   A  G
Sbjct: 273 ALPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGAG 332

Query: 239 WVAAPDPGCTPGTENAPA 256
              AP P    G    PA
Sbjct: 333 SAPAPAPASGSGPGPGPA 350



 Score = 33.5 bits (75), Expect = 0.19
 Identities = 30/90 (33%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 44  GPAGAR----RGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAG 99
           GP   R     GH PP     A     E    G   C         P A ASR A   AG
Sbjct: 44  GPRAPRDVLPHGHEPPAEEAEADLAEDEEESGG---CSDGE-----PRALASRGAAAAAG 95

Query: 100 PAGPPCRAPGRGRAAATRRSPAPGTARGSP 129
             GP   A  RG A      P+ G A  SP
Sbjct: 96  SPGPGA-AAARGAAGPGPGPPSGGAATRSP 124



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 148 SVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPG---APRPGAPGT 204
           ++PA   PPP      G        P + A   + +++    ++P PG   AP PG P  
Sbjct: 273 ALPAYGAPPP------GPAPHPHPHPHAFAFAAAAAAAPCQLSVP-PGRAAAPPPGPPTA 325

Query: 205 WPVGFAVAAPPAAAASVAPPPPAVAGAPA 233
                A +AP  A AS + P P  AG PA
Sbjct: 326 SVFAGAGSAPAPAPASGSGPGPGPAGLPA 354



 Score = 31.6 bits (70), Expect = 0.71
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 159 GGTSLGAGSRALRRPGSAALPRSP---SSSRRWAAMPGPGAPRPGAPGTWPV 207
           GG S G   RAL   G+AA   SP   +++ R AA PGPG P  GA    P+
Sbjct: 75  GGCSDGE-PRALASRGAAAAAGSPGPGAAAARGAAGPGPGPPSGGAATRSPL 125



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 87  PARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146
           PAR+   A R   P G    A       A     + G + G P  +   G A AA S G 
Sbjct: 40  PARSGPRAPRDVLPHGHEPPAEEAEADLAEDEEESGGCSDGEPRALASRGAAAAAGSPGP 99

Query: 147 RSVPARRLPPPCGGTSLGAGSRALRRP 173
            +  AR    P  G    +G  A R P
Sbjct: 100 GAAAARGAAGP--GPGPPSGGAATRSP 124



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 16/74 (21%)

Query: 189 AAMPGPGAPRPG--APGTWPVGFAVAA------PPAAAASVAPPPPAVAGAPAAAFR--- 237
           AA   PGA  PG  A G +  G+ +A       PP  A    P P A A A AAA     
Sbjct: 248 AAAGDPGAFLPGFAAYGAYGYGYGLALPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQ 307

Query: 238 -----GWVAAPDPG 246
                G  AAP PG
Sbjct: 308 LSVPPGRAAAPPPG 321


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 58.2 bits (139), Expect = 7e-09
 Identities = 69/220 (31%), Positives = 76/220 (34%), Gaps = 36/220 (16%)

Query: 54   PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRA 113
            P   AP   A +   P  GG    P + A   P A      G  A P  PP  AP     
Sbjct: 1121 PHKGAPTTPAATPPSP-KGGLATPPPKGAPTTPAATPPSPKGGLATP--PPKGAPTT--P 1175

Query: 114  AATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCGGTSLG 164
            AAT  SP  G A  SP G             GG    S  G  + PA   P P GG +  
Sbjct: 1176 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATP 1235

Query: 165  AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGA-------------PGTWPVGFAV 211
            +   A   P  AA P SP      A  P  GAP P A             P       AV
Sbjct: 1236 SPKGAPTTP--AATPPSPKGGP--ATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAV 1291

Query: 212  AAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251
              PP+     A  PP  A  P AA       P P  +PGT
Sbjct: 1292 VTPPSPKGGPATSPPKGAPTPPAA-----TPPSPKGSPGT 1326



 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 71/218 (32%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 54   PPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRA 113
            PP  AP   A +   P  GG    P + A   P A      G  A P+  P  AP     
Sbjct: 1144 PPKGAPTTPAATPPSP-KGGLATPPPKGAPTTPAATPPSPKGGLATPS--PKGAPTT--P 1198

Query: 114  AATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCGGTSLG 164
            AAT  SP  G A  SP G             GG    S  G  + PA   P P GG +  
Sbjct: 1199 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATP 1258

Query: 165  AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP-----RP----GAPGTWPVGFA----V 211
                A   P  AA P  PS     A  P  GAP      P    G P T P   A     
Sbjct: 1259 PPKGAPTPP--AATP--PSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPA 1314

Query: 212  AAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTP 249
            A PP+   S   PPP  A  P A     V  P P  TP
Sbjct: 1315 ATPPSPKGSPGTPPPKGAPTPPA-----VTPPSPKGTP 1347



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 61/220 (27%), Positives = 72/220 (32%), Gaps = 20/220 (9%)

Query: 54   PPTVAPAASAGS----QEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP-PCRAP 108
            PP   P  S  +    +E P    P   PA S     P +A      +  PA P P  AP
Sbjct: 881  PPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAP 940

Query: 109  GRGRAAATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCG 159
                 AAT  SP  G A  SP               GG    S  G  + PA   P P G
Sbjct: 941  TP--PAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKG 998

Query: 160  GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAA 219
            G +  +   A   P  A  P SP  S      P   +  P A    P G   A P    A
Sbjct: 999  GPATPSPKGAPTPP--AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGA 1056

Query: 220  SVAPPP--PAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
               P    P+  G PA         P     P  +  PA+
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096



 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 61/219 (27%), Positives = 76/219 (34%), Gaps = 33/219 (15%)

Query: 45   PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP 104
            P GA    +PP   P +  GS        P   P    A  P   A+     + GPA P 
Sbjct: 1029 PKGAS---TPPAATPPSPKGS--------PAATPLPKGA--PTTPAATLPSPKGGPATPS 1075

Query: 105  CRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLG 164
             +       AAT  SP  G A  SP G      AT  S  G  + P  +  P     +  
Sbjct: 1076 LKGAPTP-PAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPP 1134

Query: 165  AGSRALRRPGSAALPRSPSSSRRWAAMPGPGA-----PRPGAPGTWPVGFAVAAPPAAAA 219
            +    L  P     P +P+     A  P P       P  GAP T       A PP+   
Sbjct: 1135 SPKGGLATPPPKGAPTTPA-----ATPPSPKGGLATPPPKGAPTT-----PAATPPSPKG 1184

Query: 220  SVAPPPPAVAGAPAAAF----RGWVAAPDPGCTPGTENA 254
             +A P P  A    AA     +G +A P P   P T  A
Sbjct: 1185 GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAA 1223



 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 69/213 (32%), Positives = 78/213 (36%), Gaps = 25/213 (11%)

Query: 55   PTVAPAASAGSQEHPGAGG---PLCFPARSAAWGPPAR-ASRAAGRRAGPAGP-PCRAPG 109
            P  APA S  S     A     P   PA  +  G P   A+     + GPA P P  AP 
Sbjct: 905  PKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPT 964

Query: 110  RGRAAATRRSPAPGTARGSPAGVERA---------GGATAASSAGTRSVPARRLPPPCGG 160
                AAT  SP  G A  SP G             GG    S  G  + PA   P P G 
Sbjct: 965  P--PAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGS 1022

Query: 161  TSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAPRPGAPGTWPVGFAVAAPPAAAA 219
             +     +    P  AA P SP  S   AA P P GAP   A  T P      A P+   
Sbjct: 1023 PAATPFPKGASTP-PAATPPSPKGSP--AATPLPKGAPTTPA-ATLPSPKGGPATPSLKG 1078

Query: 220  SVAPP---PPAVAGAPAAAFRGWVAAPDPGCTP 249
            +  PP   PP+  G PA         P P  TP
Sbjct: 1079 APTPPAATPPSPKGGPATPSPKGAPMP-PAATP 1110



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 59/227 (25%), Positives = 77/227 (33%), Gaps = 37/227 (16%)

Query: 53   SPPTVAPAASAG---SQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPG 109
            +PP   P +  G   +  H GA  P      S   GP    S   G    PA  P    G
Sbjct: 1265 TPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPAT--SPPKGAPTPPAATPPSPKG 1322

Query: 110  RGRAAATRRSPAP-GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSR 168
                   + +P P      SP G       T +S  G  +  ++  P P   T    G  
Sbjct: 1323 SPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGP 1382

Query: 169  ALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVA-APPAAAASVAPP--- 224
            A+          +P S +R  A+P P    P +P   P+    A A P      A P   
Sbjct: 1383 AM----------TPPSPKRGPAIPSPKGD-PTSPAVIPLSPKKAPATPVTREGAATPSKG 1431

Query: 225  ---PPAVA-----GAPA-AAFRGWVAAPD-------PGCTPGTENAP 255
               PPAV       APA +A +G  A P        P  TP +   P
Sbjct: 1432 DLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEP 1478


>gi|117938759 GNAS complex locus XLas [Homo sapiens]
          Length = 1037

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 59/176 (33%), Positives = 68/176 (38%), Gaps = 33/176 (18%)

Query: 85  GPPARASRAAGRRAGPAGPPCR---APGRGRAAATRRSPAPGTARGSPAGVERAGGATAA 141
           GPP + S A  +R     PP     A   G A A      P    GSPA    AG A+A 
Sbjct: 334 GPPIKVSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPA----AGAASAD 389

Query: 142 SSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGA 201
           ++A  R+ PA    P  G T           P S   P  P S   +AA P  GA  P A
Sbjct: 390 TAA--RAAPAAPADPDSGATP--------EDPDSGTAPADPDSGA-FAADPDSGAA-PAA 437

Query: 202 PGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
           P         A P + AA  AP  P    AP A      A PD G  P    APA+
Sbjct: 438 P---------ADPDSGAAPDAPADPDSGAAPDAP-----ADPDAGAAPEAPAAPAA 479



 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 56/197 (28%), Positives = 71/197 (36%), Gaps = 20/197 (10%)

Query: 45  PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP 104
           P    R   PP    AA          GG +  P   +     A A  AA  RA PA   
Sbjct: 343 PDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASADTAA--RAAPA--- 397

Query: 105 CRAPGRGRAAATRRSPAPGTARGSP-AGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
             AP    + AT   P  GTA   P +G   A   + A+ A      +   P        
Sbjct: 398 --APADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAAPAAPADPDSGAAPDAPADPDS 455

Query: 164 GAGSRALRRPGSAALPRSPSS---SRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAAS 220
           GA   A   P + A P +P++   +   AA   P AP  GAP          AP A+A  
Sbjct: 456 GAAPDAPADPDAGAAPEAPAAPAAAETRAAHVAPAAPDAGAP---------TAPAASATR 506

Query: 221 VAPPPPAVAGAPAAAFR 237
            A    A + APA+  R
Sbjct: 507 AAQVRRAASAAPASGAR 523



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 49/170 (28%), Positives = 65/170 (38%), Gaps = 21/170 (12%)

Query: 69  PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP-----CRAPGRGRAAATRRSPAPG 123
           PGA G    P       P A     AG R G + PP         G G       SP PG
Sbjct: 189 PGAAGVPGAPPEE----PQALRPAKAGSRGGYSPPPEETMPFELDGEGFGDD---SPPPG 241

Query: 124 TARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPS 183
            +R        +  A  A+S+  R  PA   PP     ++G+ S+   RP     P + +
Sbjct: 242 LSRVIAQVDGSSQFAAVAASSAVRLTPAANAPPLWVPGAIGSPSQEAVRP-----PSNFT 296

Query: 184 SSRRWAAMPGPGAPRPGAP-GTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232
            S  W  + GP      AP G       + +PP A   +  PP  V+GAP
Sbjct: 297 GSSPWMEISGPPFEIGSAPAGVDDTPVNMDSPPIA---LDGPPIKVSGAP 343



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 64/234 (27%), Positives = 79/234 (33%), Gaps = 22/234 (9%)

Query: 46  AGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAW--GPPARASRAAGR--RAGPA 101
           AG+R G+SPP           E  G   P    +R  A   G    A+ AA    R  PA
Sbjct: 210 AGSRGGYSPPPEETMPFELDGEGFGDDSPPPGLSRVIAQVDGSSQFAAVAASSAVRLTPA 269

Query: 102 G--PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSA--GTRSVPARRLPPP 157
              PP   PG   + +      P    GS   +E +G      SA  G    P     PP
Sbjct: 270 ANAPPLWVPGAIGSPSQEAVRPPSNFTGSSPWMEISGPPFEIGSAPAGVDDTPVNMDSPP 329

Query: 158 CG--GTSLGAGSRALRRPGSAALPRSPSSSRRWAAM----------PGPGAPRPGAPGTW 205
               G  +       +R  +   P    ++    A           PG G+P  GA    
Sbjct: 330 IALDGPPIKVSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASAD 389

Query: 206 PVGFAVAAPPAAAASVAPPPPAVAG-APAAAFRGWVAA-PDPGCTPGTENAPAS 257
               A  A PA   S A P    +G APA    G  AA PD G  P     P S
Sbjct: 390 TAARAAPAAPADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAAPAAPADPDS 443


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 71/230 (30%), Positives = 84/230 (36%), Gaps = 35/230 (15%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEH------PGAGGPLCFPARSAAWGPPARASRAAGRR 97
           GP G      PP   PA   G +        PG  GP   P      GPP          
Sbjct: 759 GPRGPTGPIGPP--GPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP---------- 806

Query: 98  AGPAGPPCRAPGR-GRAAATRRSPAPG-TARGSPAGVE-RAGGATAASSAGTRSVPARRL 154
            GPAG P  APG+ G         APG    G P GV    GG+  A   G + V   R 
Sbjct: 807 -GPAGFP-GAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERG 864

Query: 155 PPPCGGTSLGAGSRALRRPGSA---ALPRSPSSSRRWAAMPGP--GAPRPGAPG-TWPVG 208
            P   G +   G+R L  P  +     P  PS S      PGP      PG+PG + P G
Sbjct: 865 SPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKG 924

Query: 209 FA-----VAAPPAAAASVAPPPPAVAGAPAA-AFRGWVAAPDPGCTPGTE 252
            A       +P A     AP P  +AG   A    G    P P  +PG +
Sbjct: 925 DAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQ 974



 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 71/218 (32%), Positives = 84/218 (38%), Gaps = 28/218 (12%)

Query: 44   GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
            GP G+     PP   P+ S G    PG  G    P      GP   A +   + +  A  
Sbjct: 882  GPPGSNGNPGPP--GPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQG 939

Query: 104  PCRAPG----RGRAAATRRSPAPGT--ARGSPA--GVERAGGATAASS-AGTRSVPARRL 154
            P  APG     G   A   +  PG    RGSP   GV+   G   A+  +G R  P  + 
Sbjct: 940  PPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQG 999

Query: 155  PPPCGGTSLGAGSRALRRPGSAALPRSPSS-----SRRWAAMPG-PGAP-RPGAPGTWPV 207
             P   GT+   G      PGS  LP    S      R     PG PGAP  PG PG  PV
Sbjct: 1000 LPGLAGTAGEPGRDG--NPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPG--PV 1055

Query: 208  GFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP 245
            G A  +     +  A P    AGAP  A  G   AP P
Sbjct: 1056 GPAGKSGDRGESGPAGP----AGAPGPA--GSRGAPGP 1087



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 63/215 (29%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 57  VAPAASAGSQEHPGAGGPLCFPARSAAWGPPA----RASRAAGRRAGPAGPPCRAPGRGR 112
           V PA S GS   PG  G       + A GPP       S       GPAG P  APG   
Sbjct: 353 VGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIP-GAPG--- 408

Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR-------LPPPCGGTSLGA 165
               R  P P  A G+P      GGA      G +  P  R       +P   G      
Sbjct: 409 LMGARGPPGPAGANGAPG---LRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465

Query: 166 GSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-TWPVGFAVAAPPAAAASVAPP 224
              +   PG+  LP   +  R      GP  P  G PG   P G   A  PA     A  
Sbjct: 466 KDGSPGEPGANGLP-GAAGERGAPGFRGPAGPN-GIPGEKGPAGERGAPGPAGPRGAAGE 523

Query: 225 P--PAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
           P    V G P    RG   +P    + G    P S
Sbjct: 524 PGRDGVPGGP--GMRGMPGSPGGPGSDGKPGPPGS 556



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 59/222 (26%), Positives = 75/222 (33%), Gaps = 30/222 (13%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GP G++     P   P   +G +  PG  G   FP      G P +     G R GP GP
Sbjct: 552 GPPGSQGESGRP--GPPGPSGPRGQPGVMG---FPGPKGNDGAPGKN----GERGGPGGP 602

Query: 104 -PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTS 162
            P   PG+      +  P P    G        G        G + +P    PP   G  
Sbjct: 603 GPQGPPGKNGETGPQGPPGPTGPGGD------KGDTGPPGPQGLQGLPGTGGPPGENGKP 656

Query: 163 LGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP--RPGAPGTWPVGFAVAAPPAAAAS 220
              G +     G A  P +P   +  A  PG   P    GAPG    G     P     +
Sbjct: 657 GEPGPK-----GDAGAPGAP-GGKGDAGAPGERGPPGLAGAPGL-RGGAGPPGPEGGKGA 709

Query: 221 VAPP-PPAVAGAPA----AAFRGWVAAPDPGCTPGTENAPAS 257
             PP PP  AG P        RG + +P P    G    P +
Sbjct: 710 AGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGA 751



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 68/237 (28%), Positives = 79/237 (33%), Gaps = 43/237 (18%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GPAG      PP    +   GS   PG  GP   P ++   GPP           GP+GP
Sbjct: 174 GPAGPPGPPGPP--GTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPG-----AIGPSGP 226

Query: 104 PCR--APGRGRAAATRRSPAPGTARGSPAGVE----------------RAGGATAASSAG 145
             +    GR      R  P P   +G PAG+                   G   A    G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKG-PAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKG 285

Query: 146 TRSVPARRLPPPCGGTSLGAGSRALRRPG--SAALPRSPSSSRRWAAMPGPGAPRPGAPG 203
              +P     P   G     G R   RPG   AA  R    +R     PGP    PG PG
Sbjct: 286 ENGLPGENGAPGPMGPRGAPGERG--RPGLPGAAGARGNDGARGSDGQPGP----PGPPG 339

Query: 204 TWPVGFAVAAPPAAAASVAPP-PPAVAGAPA----AAFRGWVAAPDPGCTPGTENAP 255
           T   GF     P A   V P   P   GAP        +G   A  P   PG   +P
Sbjct: 340 T--AGF--PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSP 392



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 51/181 (28%), Positives = 59/181 (32%), Gaps = 14/181 (7%)

Query: 64   GSQEHPGAGGPLCFPARSAAWGPPARASRAAGR-RAGPAGPPCRAPGRGRAAATRRSPAP 122
            G    PGA G    P      GP   A ++  R  +GPAGP   APG    A +R +P P
Sbjct: 1035 GENGSPGAPGA---PGHPGPPGPVGPAGKSGDRGESGPAGP-AGAPG---PAGSRGAPGP 1087

Query: 123  GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182
               RG        G A      G    P     P   G     GS     P     P  P
Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147

Query: 183  SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAP-----PAAAASVAPPPPAVAGAPAAAFR 237
                  +  PGP  P PG  G      +  +P     P        P P   G  AAA  
Sbjct: 1148 PGKDGTSGHPGPIGP-PGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIA 1206

Query: 238  G 238
            G
Sbjct: 1207 G 1207



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 53   SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
            +P +  PA   G+   PG  GP      S   GPP +   +     GP GPP     RG 
Sbjct: 1117 APGSPGPAGQQGAIGSPGPAGPRGPVGPS---GPPGKDGTSG--HPGPIGPPGPRGNRGE 1171

Query: 113  AAATRRSPAPGTARGSPAGVERA-----GGATAASSAGTRSVPARRLPPPCG 159
              +      PG  +  P G   A     GG  AA+ AG     A    P  G
Sbjct: 1172 RGSEGSPGHPG--QPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYYG 1221



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 172 RPGSAALPRSPSSSRRWAAMPG----PGAP-RPGAPGT-WPVGFAVAAPPAAAASVAPP- 224
           RP +   P+ P        +PG    PG P +PG+PG+  P G   + P     + +P  
Sbjct: 97  RPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCP-TGPQNYSPQY 155

Query: 225 -----PPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
                   VA    A + G    P P   PGT   P S
Sbjct: 156 DSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGS 193


>gi|122937321 UNC homeobox [Homo sapiens]
          Length = 531

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 70/267 (26%), Positives = 88/267 (32%), Gaps = 63/267 (23%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GP     G +    AP    G    PG   P  +P++ +  GP  R  R A + A   GP
Sbjct: 256 GPGAHASGAAGTAPAPP---GEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADKDAASCGP 312

Query: 104 PCR--APGRGRAAATRRSP--APGTARGSPAGVERAGGATAASSAGTRSVPARRLPP--- 156
                A  RG A   + SP         SP   + A  A AA++AG    P     P   
Sbjct: 313 GAAVAAVERGAAGLPKASPFSVESLLSDSPPRRKAASNAAAAAAAGLDFAPGLPCAPRTL 372

Query: 157 -------------------PCGGTSLGAGSRALRR--PGSAALPRSPSSSRRWAAMPGPG 195
                              P      GAG     +  P + A+P +P +   + A  GPG
Sbjct: 373 IGKGHFLLYPITQPLGFLVPQAALKGGAGLEPAPKDAPPAPAVPPAPPAQASFGAFSGPG 432

Query: 196 -AP-------------RPGAPGTWPVGFAVAAPPAAA------------ASVAPPPPAVA 229
            AP              PGAP   P  F   A  AA             A  APPPPA +
Sbjct: 433 GAPDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGPAPPPPAPS 492

Query: 230 GAPA------AAFRGWVAAPDPGCTPG 250
             P       A        P+PG   G
Sbjct: 493 PRPGPRPPSPAEEPATCGVPEPGAAAG 519



 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 73/266 (27%), Positives = 95/266 (35%), Gaps = 68/266 (25%)

Query: 38  RYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRR 97
           +++K L  +  R  HSP  ++  ++  S    G GG         +  PP          
Sbjct: 206 KHEKKLLKSQGRHLHSPGGLSLHSAPSSDSDSGGGG--------LSPEPPE--------- 248

Query: 98  AGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPP 157
             P  P  + PG   + A   +PAP     +P   + A   +  S AG +  P R     
Sbjct: 249 --PPPPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADKD 306

Query: 158 CGGTSLGAGSRALRRPGSAALPR----------SPSSSRRWAAMPGPGAPRPG---APG- 203
                 GA   A+ R G+A LP+          S S  RR AA     A   G   APG 
Sbjct: 307 AASCGPGAAVAAVER-GAAGLPKASPFSVESLLSDSPPRRKAASNAAAAAAAGLDFAPGL 365

Query: 204 ------------------TWPVGFAVAAPPAA---------AASVAPPPPAVAGAPAA-- 234
                             T P+GF V  P AA         A   APP PAV  AP A  
Sbjct: 366 PCAPRTLIGKGHFLLYPITQPLGFLV--PQAALKGGAGLEPAPKDAPPAPAVPPAPPAQA 423

Query: 235 ---AFRGWVAAPDPGCTPGTENAPAS 257
              AF G   APD      + +A AS
Sbjct: 424 SFGAFSGPGGAPDSAFARRSPDAVAS 449



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 50/149 (33%), Positives = 60/149 (40%), Gaps = 36/149 (24%)

Query: 78  PARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGG 137
           PA +    PPA+AS   G  +GP G P        +A  RRSP    A  SP       G
Sbjct: 411 PAPAVPPAPPAQAS--FGAFSGPGGAP-------DSAFARRSP---DAVASP-------G 451

Query: 138 ATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP 197
           A A + A  R + +       GG    AG+      G A  P +PS        P PG P
Sbjct: 452 APAPAPAPFRDLASAAATEGGGGDCADAGT-----AGPAPPPPAPS--------PRPG-P 497

Query: 198 RPGAPGTWPVGFAVAAPPAAAASVAPPPP 226
           RP +P   P    V  P AAA    P PP
Sbjct: 498 RPPSPAEEPATCGVPEPGAAA---GPSPP 523



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 34/103 (33%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPAR---SAAWGPPARASRAAGRRAGP 100
           GP GA     P +     S  +   PGA  P   P R   SAA         A    AGP
Sbjct: 430 GPGGA-----PDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGP 484

Query: 101 AGPP--------CRAPGRGRAAATRRSPAPGTARG--SPAGVE 133
           A PP         R P      AT   P PG A G   P G E
Sbjct: 485 APPPPAPSPRPGPRPPSPAEEPATCGVPEPGAAAGPSPPEGEE 527


>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
           sapiens]
          Length = 288

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 62/189 (32%), Positives = 74/189 (39%), Gaps = 31/189 (16%)

Query: 80  RSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGAT 139
           R+ AW P   A+  A  R   AGPP  AP     AA   S A   A   PA V  A    
Sbjct: 92  RAVAWRP---AAAPAAVRPPAAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPAA---- 144

Query: 140 AASSAGTRSVPARRLPPPCG--GTSLGAGSRALRRPGSAAL-PRSPSSSRRWAAMPG--- 193
                    VPA   PP  G    +L A   A   P +A+L   SP ++   AA P    
Sbjct: 145 ---------VPAAVRPPAAGPPAAALAAVYPAAADPSAASLCAASPLAAVPAAASPAAVA 195

Query: 194 -----PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 248
                PGA  P A          A P AA+ + A P   +A  PAAA R   AAP   C 
Sbjct: 196 PAAVCPGAAGPSAASLCAASQPAAVPAAASPAAAAP---LAVNPAAAARA-AAAPAAACV 251

Query: 249 PGTENAPAS 257
                +PA+
Sbjct: 252 QSVAESPAT 260



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 63/244 (25%), Positives = 85/244 (34%), Gaps = 30/244 (12%)

Query: 4   SRQRKIRPPHSDKDRDFRAVVPQ-----VNELQRKGLFWRYQKTLGPAGARRGHSPPTVA 58
           +++RK R       R+   + P      V     + + WR      PA A     PP   
Sbjct: 58  TKERKTRGDSCGNTRNLYPLTPWSAPVVVPSALTRAVAWR------PAAAPAAVRPPAAG 111

Query: 59  PAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPC--RAPGRGRAAAT 116
           P A+A +   P A  P    A   A  PPA         A PA  P   R P  G  AA 
Sbjct: 112 PPAAAPAAVCPAAADPSA--ASLCAASPPA---------AVPAAVPAAVRPPAAGPPAAA 160

Query: 117 RRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSA 176
             +  P  A  S A +  A    A  +A + +  A     P       A   A  +P + 
Sbjct: 161 LAAVYPAAADPSAASLCAASPLAAVPAAASPAAVAPAAVCPGAAGPSAASLCAASQPAAV 220

Query: 177 ALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVA-----PPPPAVAGA 231
               SP+++   A  P   A    AP    V  +VA  PA   ++A     PP P     
Sbjct: 221 PAAASPAAAAPLAVNPAAAARAAAAPAAACVQ-SVAESPATPLAIAQPVSFPPAPVPCAV 279

Query: 232 PAAA 235
           P  A
Sbjct: 280 PPLA 283



 Score = 34.7 bits (78), Expect = 0.084
 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 178 LPRSPSSSRRWAAMPGPGAPRP---GAPGTWPVGFAVAA--PPAAAASVAPPPPAVAGAP 232
           +P + + +  W     P A RP   G P   P     AA  P AA+   A PP AV  A 
Sbjct: 86  VPSALTRAVAWRPAAAPAAVRPPAAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPAAV 145

Query: 233 AAAFRGWVAAP 243
            AA R   A P
Sbjct: 146 PAAVRPPAAGP 156


>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
          Length = 793

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 64/216 (29%), Positives = 82/216 (37%), Gaps = 31/216 (14%)

Query: 38  RYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRR 97
           RY+  LG  G +R   PP  AP+A          G   C P  +    PP +  R   R 
Sbjct: 76  RYRDLLGEEGLQRPREPPAAAPSA---------GGAAPCSPRGARRGEPPQQQPRRRRRE 126

Query: 98  AGPAGPPCRAPGRGRAAA--------TRRSPAP-GTARGSPAGVERAGGATAASSAGTRS 148
             P   P  A  R   AA        +RR+P   G ++GSP        A AA +    S
Sbjct: 127 KEPEEEPAGAAARAADAACNGLPGSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARAS 186

Query: 149 VPARRLPPPCGGTSLGAGSRALRRPGS-AALPRSPSSSRRWA-AMPGP---GAPRPGAPG 203
             A +    C    L      L  PG   ALP S ++  + A A+P     GA R    G
Sbjct: 187 CAAAKTQGRCCWECLQNNLAVL--PGELGALPHSATAEEKPARALPAQDDRGASREREEG 244

Query: 204 TW----PVGFAVAAPPAA--AASVAPPPPAVAGAPA 233
                 PV     +PPA   AA+    PPA+   PA
Sbjct: 245 ALAEPAPVPAVAHSPPATVEAATSRASPPALLPGPA 280


>gi|18641360 collectin sub-family member 12 [Homo sapiens]
          Length = 742

 Score = 55.1 bits (131), Expect = 6e-08
 Identities = 59/192 (30%), Positives = 72/192 (37%), Gaps = 35/192 (18%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GP G R    PP   P  + G +   G  GP   P  +   GP            GPAGP
Sbjct: 449 GPRGDRGSQGPP--GPTGNKGQKGEKGEPGP---PGPAGERGP-----------IGPAGP 492

Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPA--GVE-RAGGATAASSAGTRSVPARRLPPPCGG 160
           P    G+G    ++ S  P  +RGSP   G +  +G        G   +P  + PP   G
Sbjct: 493 PGERGGKG----SKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPPGFQG 548

Query: 161 TSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAAS 220
                G   +  PG   LP  P        MPGP  P PG PG  P G   A  P A  +
Sbjct: 549 LQGTVGEPGV--PGPRGLPGLPGV----PGMPGPKGP-PGPPG--PSG---AVVPLALQN 596

Query: 221 VAPPPPAVAGAP 232
              P P   G P
Sbjct: 597 EPTPAPEDNGCP 608


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 69/219 (31%), Positives = 77/219 (35%), Gaps = 33/219 (15%)

Query: 43  LGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
           +GP GAR    P T       G + H G  G    P      G P     A G    P  
Sbjct: 159 VGPQGARG--FPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPG----APGENGTPGQ 212

Query: 103 PPCRA-PG-RGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGG 160
              R  PG RGR  A    P P  ARGS   V   G A    SAG    P    P P G 
Sbjct: 213 TGARGLPGERGRVGA----PGPAGARGSDGSVGPVGPAGPIGSAGPPGFPG--APGPKG- 265

Query: 161 TSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP-----RPGAPGTWPVGFAVAAPP 215
             +GA        G+A  P  P+  R    +PG   P      PGA G      A   P 
Sbjct: 266 -EIGA-------VGNAG-PAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPG 316

Query: 216 AAAASVAPPPPAVAG----APAAAFRGWVAAPDPGCTPG 250
            A A   P P  + G    A A   RG V  P P  + G
Sbjct: 317 VAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKG 355



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 62/224 (27%), Positives = 77/224 (34%), Gaps = 25/224 (11%)

Query: 44  GPAGARR-----GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWG--------PPARA 90
           GPAG R      G S P V P  + G+    GA G    P  + A G         P  A
Sbjct: 277 GPAGPRGEVGLPGLSGP-VGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGA 335

Query: 91  SRAAGRRA-----GPAGPPCRAPGRGR--AAATRRSPAPGTARGSPAGVERAGGATAASS 143
           + A G R      GPAG    +  +G   +A  +  P P    G       AG A     
Sbjct: 336 AGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP 395

Query: 144 AGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR--PGA 201
            G R  P  R  P   G +   G    R     A  R P+        PG   PR  PG+
Sbjct: 396 PGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGS 455

Query: 202 PGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP 245
           PG   +G A    P     +   P  +  A A    G +  P P
Sbjct: 456 PGN--IGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGP 497



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 58/186 (31%), Positives = 65/186 (34%), Gaps = 11/186 (5%)

Query: 51  GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR-ASRAAGRRAGPAGPPCRAPG 109
           G S P+  P    G+   PG  G    P      G P R  +R A    G  GP      
Sbjct: 634 GPSGPSGLPG-ERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGD 692

Query: 110 RGRAAATRRSPA-PGTARGSP---AGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGA 165
           RG A A    PA P   RGSP     V  AG    A  AG    P  +      G     
Sbjct: 693 RGEAGAA--GPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGEN 750

Query: 166 GSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPP- 224
           G      P  AA P  P+     A   G G P PG  G +P       PP  +    PP 
Sbjct: 751 GVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGP-PGMTG-FPGAAGRTGPPGPSGISGPPG 808

Query: 225 PPAVAG 230
           PP  AG
Sbjct: 809 PPGPAG 814



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 61/216 (28%), Positives = 73/216 (33%), Gaps = 46/216 (21%)

Query: 59  PAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP-----PCRAPGRGRA 113
           PA + G +   GA GP      +   GP  R S       GPAGP     P  A G+  A
Sbjct: 686 PAGATGDRGEAGAAGP------AGPAGP--RGSPGERGEVGPAGPNGFAGPAGAAGQPGA 737

Query: 114 AATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP 173
              R +  P   +G    V   G   AA  AG    P      P G    G        P
Sbjct: 738 KGERGAKGP---KGENGVVGPTGPVGAAGPAGPNGPPG-----PAGSRGDGGPPGMTGFP 789

Query: 174 GSAALPRSPSSSRRWAAMPGPGAP-----------------RPGAPGT-WPVGFAVAAPP 215
           G+A     P  S   +  PGP  P                 R G  G   P GFA    P
Sbjct: 790 GAAGRTGPPGPSGI-SGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGP 848

Query: 216 AAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251
           +  A  A PP    G P    +G + AP     PG+
Sbjct: 849 SGEAGTAGPP----GTPGP--QGLLGAPGILGLPGS 878



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 62/217 (28%), Positives = 71/217 (32%), Gaps = 49/217 (22%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS-RAAGRRAGPAG 102
           GP+G      PP   PA   G +   G  GP+       A GPP  A  +     AG AG
Sbjct: 799 GPSGISGPPGPP--GPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAG 856

Query: 103 PP--------CRAPG----------RGRAAATRRSPAPGT--------ARGSPAGVERAG 136
           PP          APG          RG          PG         ARG P  V   G
Sbjct: 857 PPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPG 916

Query: 137 GATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGA 196
              A   AG    P    PP   G     G R    PG+      P  +   A  PGP  
Sbjct: 917 VNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGY--PGNI----GPVGA---AGAPGPHG 967

Query: 197 P-----RPGAPG-TWPVGFAVAAPPAAAASVAPPPPA 227
           P     + G  G T P G     P   A +V P  P+
Sbjct: 968 PVGPAGKHGNRGETGPSG-----PVGPAGAVGPRGPS 999



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 39/125 (31%), Positives = 45/125 (36%), Gaps = 13/125 (10%)

Query: 43   LGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPA---RSAAWGPPARASRAAGRRA- 98
            +GPAGA     P    P    G +  PG  GP   P     +   G P  A     + A 
Sbjct: 987  VGPAGAVGPRGPS--GPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAP 1044

Query: 99   ---GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155
               GPAGP   A   G A    R+  PGT    PAG+   G       AG    P    P
Sbjct: 1045 GSVGPAGPRGPAGPSGPAGKDGRTGHPGTV--GPAGIR--GPQGHQGPAGPPGPPGPPGP 1100

Query: 156  PPCGG 160
            P   G
Sbjct: 1101 PGVSG 1105



 Score = 33.5 bits (75), Expect = 0.19
 Identities = 56/225 (24%), Positives = 66/225 (29%), Gaps = 48/225 (21%)

Query: 59  PAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRR 118
           PA   G +   G  GP          GPP           GP GPP      G  AA   
Sbjct: 34  PAGDRGPRGERGPPGPPGRDGEDGPTGPP-----------GPPGPPGPPGLGGNFAAQYD 82

Query: 119 SPAPGTARG-----SPAGVERAGGATAASS----AGTRSVPARRLPPPCGGTSLGAGSRA 169
               G   G      P G   A GA         AG    P +  P    G +   G   
Sbjct: 83  GKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAG 142

Query: 170 L-RRPGSAALPR-----SPSSSRRWAAMPG-PG-------------APRPGAPGTWPVGF 209
               PG    P       P  +R +   PG PG               +PGAPG      
Sbjct: 143 EDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPG------ 196

Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENA 254
               P A   +  P      G P    RG V AP P    G++ +
Sbjct: 197 VKGEPGAPGENGTPGQTGARGLPGE--RGRVGAPGPAGARGSDGS 239


>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 673

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 56/221 (25%), Positives = 81/221 (36%), Gaps = 36/221 (16%)

Query: 40  QKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS-------- 91
           Q T  P G     SP T +P  S      P    P   P+R++    P+RAS        
Sbjct: 461 QSTASPTG-----SPSTASPTGS------PSTASPTGSPSRASLTRTPSRASLTKMESTA 509

Query: 92  ---RAAGRR--------AGPAGPPCRAPGRGRA--AATRRSPAPGTARGSPAGVERAGGA 138
              R   R         A P G P  A   G    AA  R+P+  +   +P+       +
Sbjct: 510 SITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTPS 569

Query: 139 TAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWA----AMPGP 194
            A+ +    +V   R+PP    T + + +     P SA L +  S++        A P  
Sbjct: 570 RASLTRTPSTVLLTRMPPSASPTGMPSRTSPTGMPSSALLTKMDSTASITRTPPRASPTE 629

Query: 195 GAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235
             PR    GT P       PP A+ +  PP  +  G P+ A
Sbjct: 630 TPPRASPTGTPPRASPTGTPPRASPTGTPPRASPTGTPSRA 670



 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 57/223 (25%), Positives = 82/223 (36%), Gaps = 31/223 (13%)

Query: 38  RYQKTLGPAGARRGHSPPTVAPA---ASAGSQEHPGAGGPLCFPARSAAWGPPARAS-RA 93
           R   T  P+ A     PP  +P    +     +      P   P R++  G P RAS   
Sbjct: 391 RASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTG 450

Query: 94  AGRRAGPAGPPCRAPGRGRAAATRRSPAPGTA--RGSPAGV------ERAGGATAASSAG 145
              RA P G    A   G  +    + +P TA   GSP+         RA      S+A 
Sbjct: 451 TPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTAS 510

Query: 146 TRSVPARRLP-----------PPCGGTSLGAGSRA--LRRPGSAALPRSPSSSRRWAAMP 192
               P+R  P            P    ++G+ SRA   R P  A+L R+PS     A++ 
Sbjct: 511 ITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSR----ASLT 566

Query: 193 GPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235
            P   R     T         PP+A+ +  P   +  G P++A
Sbjct: 567 TPS--RASLTRTPSTVLLTRMPPSASPTGMPSRTSPTGMPSSA 607



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 13/184 (7%)

Query: 53  SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS-RAAGRRAGPAGPPCRAPGRG 111
           +PPT  P+ ++ ++  P        P+R++  G P+ AS      RA   G P RA  +G
Sbjct: 2   APPTRTPSRASPTRT-PSTASLTGTPSRASLTGTPSTASLMGTPSRASLTGTPPRASLKG 60

Query: 112 RAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALR 171
             +      +P  +R S   ++ +   T   S  +     +R+PP    T     +  +R
Sbjct: 61  TTSMASLMVSP--SRASLTRMQSSSLLTRTPSMAS----LKRMPPRASRTRTLPRASLMR 114

Query: 172 RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGA 231
           RP +A+L RSPS   R +    P   R     T     A+  P  A+ +  PP  ++   
Sbjct: 115 RPSTASLTRSPS---RASLTTTPS--RASLSMTPSTAAALTMPSRASLTRTPPRASLTMT 169

Query: 232 PAAA 235
           P+ A
Sbjct: 170 PSTA 173



 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 7/157 (4%)

Query: 86  PPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTAR--GSPAGVERAGGATAASS 143
           PP  +      RA P G P  A   G  +    + +P TA   G  +     G    AS 
Sbjct: 335 PPRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRASP 394

Query: 144 AGTRSVPA-RRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMP---GPGAPRP 199
            GT S  +  R PP    T + + +   +   +A+  R+P  +      P     G P  
Sbjct: 395 TGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSR 454

Query: 200 GAP-GTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235
            +P GT        +P  A+ + +P   +  G+P+ A
Sbjct: 455 ASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRA 491



 Score = 38.1 bits (87), Expect = 0.008
 Identities = 57/236 (24%), Positives = 84/236 (35%), Gaps = 40/236 (16%)

Query: 45  PAGARRGHSPP----TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAG----- 95
           P+ A    +PP    T+ P+ ++ ++  P A  P   P+R++  G P+ AS         
Sbjct: 152 PSRASLTRTPPRASLTMTPSTASLTRTPPRAS-PTGMPSRTSPTGMPSTASLTKMDSTAS 210

Query: 96  -----RRAGPAGPPCRAPGRGRAAATRRSPAPGTA-------RGSPAG-VERAGGATAAS 142
                 RA P G P RA   G       S  P TA       R SP G + R       S
Sbjct: 211 ITRTLSRASPTGTPPRASPTGSPPRASLSMMPSTALLIRTPPRASPTGMLSRTSLTKMDS 270

Query: 143 SAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAP 202
           +A     P+R       GT           P  A+L  +PS++     +     PR    
Sbjct: 271 TASITRTPSRPSTASPTGT-----------PSRASLSMTPSTASLMRML-----PRASPT 314

Query: 203 GTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGTENAPAS 257
           G             A+ S  PP  ++   P+ A+  G  +   P  TP   +   S
Sbjct: 315 GMLSRTSLTKMDSTASISRTPPRASITRTPSRASPTGKPSTASPTGTPSRASPTGS 370



 Score = 37.0 bits (84), Expect = 0.017
 Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 8/150 (5%)

Query: 91  SRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVP 150
           S A+  R  P     R P R   A+    P+  +  G+P+     G  + AS  G  S  
Sbjct: 327 STASISRTPPRASITRTPSR---ASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTA 383

Query: 151 A-RRLPPPCGGTSLGAGSRALRRPGSAA----LPRSPSSSRRWAAMPGPGAPRPGAPGTW 205
           +    PP    T   + +   R+P  A+    L R+  +     A P    PR    GT 
Sbjct: 384 SPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTP 443

Query: 206 PVGFAVAAPPAAAASVAPPPPAVAGAPAAA 235
           P       P  A+ +      +  G+P+ A
Sbjct: 444 PRASPTGTPSRASPTGTQSTASPTGSPSTA 473


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 57/208 (27%), Positives = 79/208 (37%), Gaps = 27/208 (12%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQE----HPGAGGPLCFPARSAAWGPPARASRAA----- 94
           GP   R+G  PP        G Q      P AG PL     S    P   AS+AA     
Sbjct: 471 GPGPQRQG--PPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528

Query: 95  -GRRA-----GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRS 148
            GR++     GP  PP   P    +   +  P   T + S +G      + A      R 
Sbjct: 529 QGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQ 588

Query: 149 VPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAPRPGAPGTWPV 207
            P ++ P P G T   + +  + R G       P++ +   + PGP G P+P        
Sbjct: 589 GPPQKPPGPAGPTRQASQAGPVPRTG------PPTTQQPRPSGPGPAGRPKPQLA---QK 639

Query: 208 GFAVAAPPAAAASVAPPPPAVAGAPAAA 235
                 PPA AA+  PP P +  +PA A
Sbjct: 640 PSQDVPPPATAAAGGPPHPQLKASPAQA 667



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 56/187 (29%), Positives = 70/187 (37%), Gaps = 45/187 (24%)

Query: 78  PARSAAWGPPARASRAAGRRAG--PAGPPC--RAPGRGRAAATRRSPAPGTARGSPAGVE 133
           P R +    P+  +   GR+    PAGPP   R P +G        P PG  R  P    
Sbjct: 428 PGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPP----QPGPGPQRQGP---- 479

Query: 134 RAGGATAASSAGTRSVPARRLPPPCGGTSLG-----AGSRALRR-PGSAALPRSPSSSRR 187
                           P ++ PPP G   L      AGS   +R P   + P+ P+S   
Sbjct: 480 ----------------PLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQ-- 521

Query: 188 WAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP-- 245
            AA P  G  R   P    V     APPAA    +P P   AG P A  +  V+ P P  
Sbjct: 522 -AAPPTQGQGRQSRP----VAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPK 576

Query: 246 --GCTPG 250
             G  PG
Sbjct: 577 ASGAPPG 583


>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
          Length = 1120

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 73/249 (29%), Positives = 81/249 (32%), Gaps = 59/249 (23%)

Query: 45   PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAG--------- 95
            PAG      PP  A  AS   +E PG  G            PP+R S   G         
Sbjct: 828  PAGPSEPPGPPAPAGPASDTEEEEPGPEGT-----------PPSRGSSGEGLPFAEEGNL 876

Query: 96   ---RRAGPAGPPCRAPGRGRAAATRRSPAP----------GTARGSPAGVERAGGATAAS 142
               +R  PAGPP            R +P P           T +  P   ER    TA  
Sbjct: 877  TIKQRPKPAGPP-----------PRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALL 925

Query: 143  SAGTRSV---PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP 199
            + G  S    PA  LP P  G S  A S     P S      P+      AM  P  P P
Sbjct: 926  AFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCP 985

Query: 200  G------APGTWPVGFAVAAPPAA-----AASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 248
            G      A   W       A PAA      A  AP P +VA     AF G   AP  G  
Sbjct: 986  GPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVA-CTQLAFSGPKLAPRLGPR 1044

Query: 249  PGTENAPAS 257
            P     P S
Sbjct: 1045 PVPPPRPES 1053



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 49/180 (27%), Positives = 66/180 (36%), Gaps = 23/180 (12%)

Query: 47  GARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCR 106
           G RR    P +       + E P   GP     + +   P  +A+ A G       PP R
Sbjct: 553 GGRRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPAR 612

Query: 107 APGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAG 166
           +P +    A  RS   G ++  PA     G     S    R++P     PP   +SL   
Sbjct: 613 SPSQESIGA--RSRGSGHSQEQPAPQPSGGD---PSPPQERNLPEGTERPPKLCSSL--- 664

Query: 167 SRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPP 226
                 PG    P      +   + P PG P PGAP  W   + +A PPA      PP P
Sbjct: 665 ------PGQGPPPYVFMYPQGSPSSPAPGPP-PGAP--WAFSY-LAGPPA-----TPPDP 709



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 70/249 (28%), Positives = 74/249 (29%), Gaps = 71/249 (28%)

Query: 51  GHSPPTVAPAASAGSQEHPGAGGPLCFP-ARSAAWGPPA------RASR----------- 92
           G  PP        GS   P  G P   P A S   GPPA      R  R           
Sbjct: 666 GQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPT 725

Query: 93  ---AAGRRAGPAGPPC-------RAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAAS 142
              A G   GP G          R PGR     T  S  P  ARG+P        A  A 
Sbjct: 726 EGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTP---RSQSFALRAR 782

Query: 143 SAGTRSVPARRL---------PPPCG---GTSLGAGSRALRRPGSAALPRSPSSSRRWAA 190
             G    P +RL         PPP     G   GA     R     A P  P        
Sbjct: 783 RKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEP-------- 834

Query: 191 MPGPGAP----------RPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240
            PGP AP           PG  GT         PP+  +S    P A  G      R   
Sbjct: 835 -PGPPAPAGPASDTEEEEPGPEGT---------PPSRGSSGEGLPFAEEGNLTIKQRPKP 884

Query: 241 AAPDPGCTP 249
           A P P  TP
Sbjct: 885 AGPPPRETP 893


>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
          Length = 1202

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 73/249 (29%), Positives = 81/249 (32%), Gaps = 59/249 (23%)

Query: 45   PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAG--------- 95
            PAG      PP  A  AS   +E PG  G            PP+R S   G         
Sbjct: 910  PAGPSEPPGPPAPAGPASDTEEEEPGPEGT-----------PPSRGSSGEGLPFAEEGNL 958

Query: 96   ---RRAGPAGPPCRAPGRGRAAATRRSPAP----------GTARGSPAGVERAGGATAAS 142
               +R  PAGPP            R +P P           T +  P   ER    TA  
Sbjct: 959  TIKQRPKPAGPP-----------PRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALL 1007

Query: 143  SAGTRSV---PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP 199
            + G  S    PA  LP P  G S  A S     P S      P+      AM  P  P P
Sbjct: 1008 AFGVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCP 1067

Query: 200  G------APGTWPVGFAVAAPPAA-----AASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 248
            G      A   W       A PAA      A  AP P +VA     AF G   AP  G  
Sbjct: 1068 GPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVA-CTQLAFSGPKLAPRLGPR 1126

Query: 249  PGTENAPAS 257
            P     P S
Sbjct: 1127 PVPPPRPES 1135



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 49/180 (27%), Positives = 66/180 (36%), Gaps = 23/180 (12%)

Query: 47  GARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCR 106
           G RR    P +       + E P   GP     + +   P  +A+ A G       PP R
Sbjct: 635 GGRRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPAR 694

Query: 107 APGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAG 166
           +P +    A  RS   G ++  PA     G     S    R++P     PP   +SL   
Sbjct: 695 SPSQESIGA--RSRGSGHSQEQPAPQPSGGD---PSPPQERNLPEGTERPPKLCSSL--- 746

Query: 167 SRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPP 226
                 PG    P      +   + P PG P PGAP  W   + +A PPA      PP P
Sbjct: 747 ------PGQGPPPYVFMYPQGSPSSPAPGPP-PGAP--WAFSY-LAGPPA-----TPPDP 791



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 70/249 (28%), Positives = 74/249 (29%), Gaps = 71/249 (28%)

Query: 51  GHSPPTVAPAASAGSQEHPGAGGPLCFP-ARSAAWGPPA------RASR----------- 92
           G  PP        GS   P  G P   P A S   GPPA      R  R           
Sbjct: 748 GQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPT 807

Query: 93  ---AAGRRAGPAGPPC-------RAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAAS 142
              A G   GP G          R PGR     T  S  P  ARG+P        A  A 
Sbjct: 808 EGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTP---RSQSFALRAR 864

Query: 143 SAGTRSVPARRL---------PPPCG---GTSLGAGSRALRRPGSAALPRSPSSSRRWAA 190
             G    P +RL         PPP     G   GA     R     A P  P        
Sbjct: 865 RKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEP-------- 916

Query: 191 MPGPGAP----------RPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWV 240
            PGP AP           PG  GT         PP+  +S    P A  G      R   
Sbjct: 917 -PGPPAPAGPASDTEEEEPGPEGT---------PPSRGSSGEGLPFAEEGNLTIKQRPKP 966

Query: 241 AAPDPGCTP 249
           A P P  TP
Sbjct: 967 AGPPPRETP 975


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 73/247 (29%), Positives = 79/247 (31%), Gaps = 52/247 (21%)

Query: 44  GPAGAR--RGHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPA----- 88
           GP G R  RG +  + A   S G   H        PG  GP  FP      GPP      
Sbjct: 758 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 817

Query: 89  -----RASRAAGRRAGPAGPPCRAPGRGRAAAT-----RRSPA----------PGTA--R 126
                R       + GP GPP     +G A  T     R  P           PGTA   
Sbjct: 818 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 877

Query: 127 GSPAGVERAGGATAASSAGTRSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185
           G+       G       AG R  P  R LP   GG  L         PG A  P      
Sbjct: 878 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP----GE 933

Query: 186 RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA--AFRGWVAAP 243
           R  A   GP  P PG PG  P G     PP AA     P       P      +G V  P
Sbjct: 934 RGAAGSGGPIGP-PGRPG--PQG-----PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 985

Query: 244 DPGCTPG 250
            P   PG
Sbjct: 986 GPAGPPG 992



 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 64/237 (27%), Positives = 78/237 (32%), Gaps = 47/237 (19%)

Query: 44   GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-ARASRAAGRRAGPAG 102
            GP+G      PP   PA S G +   G+GGP+  P R    GPP A   +      GP G
Sbjct: 920  GPSG------PP--GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 971

Query: 103  PPCRAPGRGRAAATRRSPAPGTA-----------------------RGSPAGVERAGGAT 139
            P  R   +G       +  PG A                        G P      G   
Sbjct: 972  PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1031

Query: 140  AASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP----GSAALPRSPSSSRRWAAMPGPG 195
               +AG    P  R P    G     G+R    P    G   LP  PS  +      GP 
Sbjct: 1032 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP-GPSGEKGETGDVGPM 1090

Query: 196  APRPGAPG-TWPVGFAVA----APPAAAASVAPP----PPAVAGAPAAAFRGWVAAP 243
             P PG PG   P G   A     PP    ++ PP     P  +G+P       V  P
Sbjct: 1091 GP-PGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGP 1146



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 66/231 (28%), Positives = 77/231 (33%), Gaps = 43/231 (18%)

Query: 44  GPAGARRGHSPPTVAPAASA-----------GSQEHPGAGGP---LCFPARSAAWGPPAR 89
           GP G + G + PT  P               G   +PG  GP   L FP    A G   +
Sbjct: 683 GPEGPK-GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGE--K 739

Query: 90  ASRAAGRRAGPAG---PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146
            +R    ++GP G   P      RG   AT +S A GT+ G                 G 
Sbjct: 740 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD----------------GP 783

Query: 147 RSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-T 204
              P  R LP P G             PG   LP  P   R      G   P PG PG  
Sbjct: 784 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGP-PGPPGVV 841

Query: 205 WPVGFA-VAAPPAAAASVAPP-PPAVAGAPAAAFR-GWVAAPDPGCTPGTE 252
            P G A    P        PP PP   G P  A + G    P P   PG +
Sbjct: 842 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD 892



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 52/199 (26%), Positives = 60/199 (30%), Gaps = 48/199 (24%)

Query: 44   GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
            GP G R         PA S GS+   G  G    P    A G           + GP GP
Sbjct: 1229 GPLGKR--------GPAGSPGSEGRQGGKGAKGDPGAIGAPG-----------KTGPVGP 1269

Query: 104  PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
                      A     P P   RG P  V + G   A   AG    P    PP   G   
Sbjct: 1270 ----------AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRG 1316

Query: 164  GAGSRALR----------------RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207
             AG++  +                  G   LP    S  +   M  PGA  P  PG  P 
Sbjct: 1317 DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1376

Query: 208  GFAVAAPPAAAASVAPPPP 226
                A P  A  +  P  P
Sbjct: 1377 LPGPAGPKGAKGATGPGGP 1395



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 40/159 (25%), Positives = 50/159 (31%), Gaps = 17/159 (10%)

Query: 53   SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
            +P    P   AG    PG  G    P      G P    +A     GP GPP     RG 
Sbjct: 1260 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP--PGPVGPPGLPGLRGD 1317

Query: 113  AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
            A A          +G P  +   G        G R +P  +  P   G     G+     
Sbjct: 1318 AGAKGE-------KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1370

Query: 173  PGSAALPRSPSSSRRWAAMPGPGAPR--------PGAPG 203
            PG       P+  +      GPG P+        PG PG
Sbjct: 1371 PGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1409



 Score = 33.5 bits (75), Expect = 0.19
 Identities = 55/201 (27%), Positives = 65/201 (32%), Gaps = 50/201 (24%)

Query: 42   TLGPAGARRGHSPPTVAPAAS--AGSQEHPG-------AGGPLCFPARSAAWGPPARASR 92
            T G  G +    PP  AP     AG +  PG       AGGP          GPP  A  
Sbjct: 873  TAGKEGTKGDPGPPG-APGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGS 930

Query: 93   AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152
               R A  +G P   PGR         P P   +G P             +AG + VP  
Sbjct: 931  PGERGAAGSGGPIGPPGR---------PGP---QGPP------------GAAGEKGVPGE 966

Query: 153  RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP----------RPGAP 202
            +   P G T        +  PG A  P           +  PG             PG P
Sbjct: 967  K--GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPP 1024

Query: 203  GTWPVGFAVAAPPAAAASVAP 223
            G  P+G  V  P AA A   P
Sbjct: 1025 G--PIG-PVGQPGAAGADGEP 1042



 Score = 33.1 bits (74), Expect = 0.24
 Identities = 50/193 (25%), Positives = 60/193 (31%), Gaps = 23/193 (11%)

Query: 64  GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRA-GPAGPPCRAPGRGRAAATRRSPAP 122
           G   + G  GPL  P      G          R   G  GPP +A  RGRA A       
Sbjct: 404 GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGA------- 456

Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182
             ARG P      G        G   +P   LP   G      G++ L  P      R  
Sbjct: 457 DGARGMP------GDPGVKGDRGFDGLPG--LPGEKGHRG-DTGAQGLPGPPGEDGERGD 507

Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 242
                   +PG   PR       P G  +  PP       P  P  +  P    +G    
Sbjct: 508 DGEIGPRGLPGESGPRGLLGPKGPPG--IPGPPGVRGMDGPQGPKGSLGP----QGEPGP 561

Query: 243 PDPGCTPGTENAP 255
           P    TPGT+  P
Sbjct: 562 PGQQGTPGTQGLP 574


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 73/247 (29%), Positives = 79/247 (31%), Gaps = 52/247 (21%)

Query: 44  GPAGAR--RGHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPA----- 88
           GP G R  RG +  + A   S G   H        PG  GP  FP      GPP      
Sbjct: 737 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 796

Query: 89  -----RASRAAGRRAGPAGPPCRAPGRGRAAAT-----RRSPA----------PGTA--R 126
                R       + GP GPP     +G A  T     R  P           PGTA   
Sbjct: 797 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 856

Query: 127 GSPAGVERAGGATAASSAGTRSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185
           G+       G       AG R  P  R LP   GG  L         PG A  P      
Sbjct: 857 GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP----GE 912

Query: 186 RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA--AFRGWVAAP 243
           R  A   GP  P PG PG  P G     PP AA     P       P      +G V  P
Sbjct: 913 RGAAGSGGPIGP-PGRPG--PQG-----PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 964

Query: 244 DPGCTPG 250
            P   PG
Sbjct: 965 GPAGPPG 971



 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 64/237 (27%), Positives = 78/237 (32%), Gaps = 47/237 (19%)

Query: 44   GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-ARASRAAGRRAGPAG 102
            GP+G      PP   PA S G +   G+GGP+  P R    GPP A   +      GP G
Sbjct: 899  GPSG------PP--GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 950

Query: 103  PPCRAPGRGRAAATRRSPAPGTA-----------------------RGSPAGVERAGGAT 139
            P  R   +G       +  PG A                        G P      G   
Sbjct: 951  PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1010

Query: 140  AASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP----GSAALPRSPSSSRRWAAMPGPG 195
               +AG    P  R P    G     G+R    P    G   LP  PS  +      GP 
Sbjct: 1011 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP-GPSGEKGETGDVGPM 1069

Query: 196  APRPGAPG-TWPVGFAVA----APPAAAASVAPP----PPAVAGAPAAAFRGWVAAP 243
             P PG PG   P G   A     PP    ++ PP     P  +G+P       V  P
Sbjct: 1070 GP-PGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGP 1125



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 66/231 (28%), Positives = 77/231 (33%), Gaps = 43/231 (18%)

Query: 44  GPAGARRGHSPPTVAPAASA-----------GSQEHPGAGGP---LCFPARSAAWGPPAR 89
           GP G + G + PT  P               G   +PG  GP   L FP    A G   +
Sbjct: 662 GPEGPK-GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGE--K 718

Query: 90  ASRAAGRRAGPAG---PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146
            +R    ++GP G   P      RG   AT +S A GT+ G                 G 
Sbjct: 719 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD----------------GP 762

Query: 147 RSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-T 204
              P  R LP P G             PG   LP  P   R      G   P PG PG  
Sbjct: 763 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGP-PGPPGVV 820

Query: 205 WPVGFA-VAAPPAAAASVAPP-PPAVAGAPAAAFR-GWVAAPDPGCTPGTE 252
            P G A    P        PP PP   G P  A + G    P P   PG +
Sbjct: 821 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD 871



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 52/199 (26%), Positives = 60/199 (30%), Gaps = 48/199 (24%)

Query: 44   GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
            GP G R         PA S GS+   G  G    P    A G           + GP GP
Sbjct: 1208 GPLGKR--------GPAGSPGSEGRQGGKGAKGDPGAIGAPG-----------KTGPVGP 1248

Query: 104  PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
                      A     P P   RG P  V + G   A   AG    P    PP   G   
Sbjct: 1249 ----------AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRG 1295

Query: 164  GAGSRALR----------------RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207
             AG++  +                  G   LP    S  +   M  PGA  P  PG  P 
Sbjct: 1296 DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1355

Query: 208  GFAVAAPPAAAASVAPPPP 226
                A P  A  +  P  P
Sbjct: 1356 LPGPAGPKGAKGATGPGGP 1374



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 40/159 (25%), Positives = 50/159 (31%), Gaps = 17/159 (10%)

Query: 53   SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
            +P    P   AG    PG  G    P      G P    +A     GP GPP     RG 
Sbjct: 1239 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP--PGPVGPPGLPGLRGD 1296

Query: 113  AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
            A A          +G P  +   G        G R +P  +  P   G     G+     
Sbjct: 1297 AGAKGE-------KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1349

Query: 173  PGSAALPRSPSSSRRWAAMPGPGAPR--------PGAPG 203
            PG       P+  +      GPG P+        PG PG
Sbjct: 1350 PGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1388



 Score = 33.5 bits (75), Expect = 0.19
 Identities = 55/201 (27%), Positives = 65/201 (32%), Gaps = 50/201 (24%)

Query: 42   TLGPAGARRGHSPPTVAPAAS--AGSQEHPG-------AGGPLCFPARSAAWGPPARASR 92
            T G  G +    PP  AP     AG +  PG       AGGP          GPP  A  
Sbjct: 852  TAGKEGTKGDPGPPG-APGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGS 909

Query: 93   AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152
               R A  +G P   PGR         P P   +G P             +AG + VP  
Sbjct: 910  PGERGAAGSGGPIGPPGR---------PGP---QGPP------------GAAGEKGVPGE 945

Query: 153  RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP----------RPGAP 202
            +   P G T        +  PG A  P           +  PG             PG P
Sbjct: 946  K--GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPP 1003

Query: 203  GTWPVGFAVAAPPAAAASVAP 223
            G  P+G  V  P AA A   P
Sbjct: 1004 G--PIG-PVGQPGAAGADGEP 1021



 Score = 33.1 bits (74), Expect = 0.24
 Identities = 50/193 (25%), Positives = 60/193 (31%), Gaps = 23/193 (11%)

Query: 64  GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRA-GPAGPPCRAPGRGRAAATRRSPAP 122
           G   + G  GPL  P      G          R   G  GPP +A  RGRA A       
Sbjct: 383 GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGA------- 435

Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182
             ARG P      G        G   +P   LP   G      G++ L  P      R  
Sbjct: 436 DGARGMP------GDPGVKGDRGFDGLPG--LPGEKGHRG-DTGAQGLPGPPGEDGERGD 486

Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 242
                   +PG   PR       P G  +  PP       P  P  +  P    +G    
Sbjct: 487 DGEIGPRGLPGESGPRGLLGPKGPPG--IPGPPGVRGMDGPQGPKGSLGP----QGEPGP 540

Query: 243 PDPGCTPGTENAP 255
           P    TPGT+  P
Sbjct: 541 PGQQGTPGTQGLP 553


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 73/247 (29%), Positives = 79/247 (31%), Gaps = 52/247 (21%)

Query: 44   GPAGAR--RGHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPA----- 88
            GP G R  RG +  + A   S G   H        PG  GP  FP      GPP      
Sbjct: 844  GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 903

Query: 89   -----RASRAAGRRAGPAGPPCRAPGRGRAAAT-----RRSPA----------PGTA--R 126
                 R       + GP GPP     +G A  T     R  P           PGTA   
Sbjct: 904  GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 963

Query: 127  GSPAGVERAGGATAASSAGTRSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185
            G+       G       AG R  P  R LP   GG  L         PG A  P      
Sbjct: 964  GTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP----GE 1019

Query: 186  RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA--AFRGWVAAP 243
            R  A   GP  P PG PG  P G     PP AA     P       P      +G V  P
Sbjct: 1020 RGAAGSGGPIGP-PGRPG--PQG-----PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 1071

Query: 244  DPGCTPG 250
             P   PG
Sbjct: 1072 GPAGPPG 1078



 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 64/237 (27%), Positives = 78/237 (32%), Gaps = 47/237 (19%)

Query: 44   GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-ARASRAAGRRAGPAG 102
            GP+G      PP   PA S G +   G+GGP+  P R    GPP A   +      GP G
Sbjct: 1006 GPSG------PP--GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 1057

Query: 103  PPCRAPGRGRAAATRRSPAPGTA-----------------------RGSPAGVERAGGAT 139
            P  R   +G       +  PG A                        G P      G   
Sbjct: 1058 PTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1117

Query: 140  AASSAGTRSVPARRLPPPCGGTSLGAGSRALRRP----GSAALPRSPSSSRRWAAMPGPG 195
               +AG    P  R P    G     G+R    P    G   LP  PS  +      GP 
Sbjct: 1118 QPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP-GPSGEKGETGDVGPM 1176

Query: 196  APRPGAPG-TWPVGFAVA----APPAAAASVAPP----PPAVAGAPAAAFRGWVAAP 243
             P PG PG   P G   A     PP    ++ PP     P  +G+P       V  P
Sbjct: 1177 GP-PGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGP 1232



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 66/231 (28%), Positives = 77/231 (33%), Gaps = 43/231 (18%)

Query: 44  GPAGARRGHSPPTVAPAASA-----------GSQEHPGAGGP---LCFPARSAAWGPPAR 89
           GP G + G + PT  P               G   +PG  GP   L FP    A G   +
Sbjct: 769 GPEGPK-GRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGE--K 825

Query: 90  ASRAAGRRAGPAG---PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGT 146
            +R    ++GP G   P      RG   AT +S A GT+ G                 G 
Sbjct: 826 GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD----------------GP 869

Query: 147 RSVPARR-LPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-T 204
              P  R LP P G             PG   LP  P   R      G   P PG PG  
Sbjct: 870 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHP-GQRGEVGFQGKTGP-PGPPGVV 927

Query: 205 WPVGFA-VAAPPAAAASVAPP-PPAVAGAPAAAFR-GWVAAPDPGCTPGTE 252
            P G A    P        PP PP   G P  A + G    P P   PG +
Sbjct: 928 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD 978



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 52/199 (26%), Positives = 60/199 (30%), Gaps = 48/199 (24%)

Query: 44   GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
            GP G R         PA S GS+   G  G    P    A G           + GP GP
Sbjct: 1315 GPLGKR--------GPAGSPGSEGRQGGKGAKGDPGAIGAPG-----------KTGPVGP 1355

Query: 104  PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
                      A     P P   RG P  V + G   A   AG    P    PP   G   
Sbjct: 1356 ----------AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP---PGPVGPPGLPGLRG 1402

Query: 164  GAGSRALR----------------RPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207
             AG++  +                  G   LP    S  +   M  PGA  P  PG  P 
Sbjct: 1403 DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1462

Query: 208  GFAVAAPPAAAASVAPPPP 226
                A P  A  +  P  P
Sbjct: 1463 LPGPAGPKGAKGATGPGGP 1481



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 40/159 (25%), Positives = 50/159 (31%), Gaps = 17/159 (10%)

Query: 53   SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
            +P    P   AG    PG  G    P      G P    +A     GP GPP     RG 
Sbjct: 1346 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGP--PGPVGPPGLPGLRGD 1403

Query: 113  AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
            A A          +G P  +   G        G R +P  +  P   G     G+     
Sbjct: 1404 AGAKGE-------KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1456

Query: 173  PGSAALPRSPSSSRRWAAMPGPGAPR--------PGAPG 203
            PG       P+  +      GPG P+        PG PG
Sbjct: 1457 PGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1495



 Score = 33.5 bits (75), Expect = 0.19
 Identities = 55/201 (27%), Positives = 65/201 (32%), Gaps = 50/201 (24%)

Query: 42   TLGPAGARRGHSPPTVAPAAS--AGSQEHPG-------AGGPLCFPARSAAWGPPARASR 92
            T G  G +    PP  AP     AG +  PG       AGGP          GPP  A  
Sbjct: 959  TAGKEGTKGDPGPPG-APGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGS 1016

Query: 93   AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152
               R A  +G P   PGR         P P   +G P             +AG + VP  
Sbjct: 1017 PGERGAAGSGGPIGPPGR---------PGP---QGPP------------GAAGEKGVPGE 1052

Query: 153  RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP----------RPGAP 202
            +   P G T        +  PG A  P           +  PG             PG P
Sbjct: 1053 K--GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPP 1110

Query: 203  GTWPVGFAVAAPPAAAASVAP 223
            G  P+G  V  P AA A   P
Sbjct: 1111 G--PIG-PVGQPGAAGADGEP 1128



 Score = 33.1 bits (74), Expect = 0.24
 Identities = 50/193 (25%), Positives = 60/193 (31%), Gaps = 23/193 (11%)

Query: 64  GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRA-GPAGPPCRAPGRGRAAATRRSPAP 122
           G   + G  GPL  P      G          R   G  GPP +A  RGRA A       
Sbjct: 490 GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGA------- 542

Query: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSP 182
             ARG P      G        G   +P   LP   G      G++ L  P      R  
Sbjct: 543 DGARGMP------GDPGVKGDRGFDGLPG--LPGEKGHRG-DTGAQGLPGPPGEDGERGD 593

Query: 183 SSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 242
                   +PG   PR       P G  +  PP       P  P  +  P    +G    
Sbjct: 594 DGEIGPRGLPGESGPRGLLGPKGPPG--IPGPPGVRGMDGPQGPKGSLGP----QGEPGP 647

Query: 243 PDPGCTPGTENAP 255
           P    TPGT+  P
Sbjct: 648 PGQQGTPGTQGLP 660


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 70/238 (29%), Positives = 80/238 (33%), Gaps = 41/238 (17%)

Query: 44  GPAGARRGHSPPTVAPA----ASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAG 99
           GPAG R GH  P+  P      S G Q  PG  GP   P  SA   P            G
Sbjct: 66  GPAGPR-GHPGPSGPPGKPGYGSPGLQGEPGLPGP---PGPSAVGKPGVPGLPGKPGERG 121

Query: 100 PAGP-----PCRAPGRGRAAATRRSPAPGTARGSPAGVE---RAGGATAASSAGTRSVPA 151
           P GP     P   PG       R  P P    G PAG+    + G      + G R  P 
Sbjct: 122 PYGPKGDVGPAGLPG------PRGPPGPPGIPG-PAGISVPGKPGQQGPTGAPGPRGFPG 174

Query: 152 RRLPPPCGGTSLGAGSR---ALRRPGSAALPRSPSSSRRWAAMPGPGAPR----PGAPG- 203
            +  P   G +   G     A  RPG   LP  P      +  PG G       PG PG 
Sbjct: 175 EKGAPGVPGMNGQKGEMGYGAPGRPGERGLP-GPQGPTGPSGPPGVGKRGENGVPGQPGI 233

Query: 204 TWPVGFAVAAPPAAAASVAPP----PPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
               GF     P     + PP    PP   G       G   AP     PGT+  P +
Sbjct: 234 KGDRGF-----PGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGA 286



 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 56/225 (24%), Positives = 69/225 (30%), Gaps = 18/225 (8%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GP G      P  ++     G Q   GA GP  FP    A G P    +      G  G 
Sbjct: 139 GPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGR 198

Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR---LPPPCGG 160
           P      G    T  S  PG  +    GV    G       G R  P       PP   G
Sbjct: 199 PGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGI-----KGDRGFPGEMGPIGPPGPQG 253

Query: 161 TSLGAGSRALRRPGSAALPRSPS--SSRRWAAMPG-------PGAPRPGAPGTWPVGFAV 211
                G   + +PG+A  P  P    ++     PG       PG  +PG PG        
Sbjct: 254 PPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPA 313

Query: 212 AAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGTENAP 255
             P    A     P  + G P      G +    P   PG+   P
Sbjct: 314 GLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLP 358



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 56/208 (26%), Positives = 69/208 (33%), Gaps = 27/208 (12%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GP G   G + P   P A  G +  PG+ G   +P +    GP            GP G 
Sbjct: 359 GPKG-ETGPAGPAGYPGAK-GERGSPGSDGKPGYPGKPGLDGPKGNPG-----LPGPKGD 411

Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTR---------SVPARRL 154
               PG G          P  A+G P     AG   A    GTR           P  + 
Sbjct: 412 ----PGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKG 467

Query: 155 PPPCGGT--SLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG--TWPVGFA 210
            P   G     G  ++ L  P     P  P        +PGP  P PG PG    P GF 
Sbjct: 468 DPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGP-PGPPGQAVMPEGFI 526

Query: 211 VAA--PPAAAASVAPPPPAVAGAPAAAF 236
            A   P  +   +      V G P +AF
Sbjct: 527 KAGQRPSLSGTPLVSANQGVTGMPVSAF 554



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 60/235 (25%), Positives = 70/235 (29%), Gaps = 26/235 (11%)

Query: 43  LGPAGARRGHSPP------TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARAS----- 91
           +GP G      PP       +    +AG+   PG  G    P      GPP         
Sbjct: 243 MGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPG 302

Query: 92  --RAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSV 149
                G R GPAG P     +G          PG   G P  +   G      S G    
Sbjct: 303 LPGLKGER-GPAGLPGGPGAKGEQGPAGLPGKPGLT-GPPGNMGPQGPKGIPGSHGLPGP 360

Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP-GAPGT-WPV 207
                P    G     G R    PGS   P  P           PG P P G PG   P 
Sbjct: 361 KGETGPAGPAGYPGAKGERG--SPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPP 418

Query: 208 GFAVAAPPAAAASV-----APPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
           G      PA A  +        P    G P    RG +  P     PG++  P S
Sbjct: 419 GLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGT--RGPIGPPGIPGFPGSKGDPGS 471



 Score = 32.7 bits (73), Expect = 0.32
 Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 32/168 (19%)

Query: 43  LGPAGARR--GHSPPTVAPAASAGSQEHPGAGGPLC------FPARSA---AWGPPARAS 91
           +GPAGA+   GH+      A   G+   PG  GP+       FP       + GPP  A 
Sbjct: 424 VGPAGAKGMPGHN----GEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAG 479

Query: 92  RAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151
            A     GP GPP   PG    +     P P    G P       G      AG R    
Sbjct: 480 IATKGLNGPTGPP-GPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFI---KAGQR---- 531

Query: 152 RRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRP 199
               P   GT L + ++     G   +P S  +     A P  G P P
Sbjct: 532 ----PSLSGTPLVSANQ-----GVTGMPVSAFTVILSKAYPAIGTPIP 570


>gi|4758392 forkhead box D1 [Homo sapiens]
          Length = 465

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 73/251 (29%), Positives = 93/251 (37%), Gaps = 31/251 (12%)

Query: 10  RPPHSDKDRDFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPAASAGSQEHP 69
           R P +    ++  + P+  ++   G F R +K       R+   PP  A A S       
Sbjct: 188 REPGNPGKGNYWTLDPESADMFDNGSFLRRRKRF----KRQPLLPPNAAAAESL-LLRGA 242

Query: 70  GAGGPLCFPARSAAWGPPARASRAAGRRAGPAG-------PPCRAPGRGRAAATRRSPAP 122
           GA G    PA +AA  PPA          GP G       PP   P    AAA   + A 
Sbjct: 243 GAAGGAGDPAAAAALFPPAPPPPPHAYGYGPYGCGYGLQLPPYAPPSALFAAAAAAAAAA 302

Query: 123 GTARGSPAGVERAGGATAA---SSAGTRSVP-ARRLPPPCGGTSLGAGSRALRRPGSAAL 178
                SP       GA A    ++ G R  P    LP P   ++  AG      PG++AL
Sbjct: 303 AFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAGG-----PGASAL 357

Query: 179 PRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRG 238
            RSP S    + + G   P   A        A AA  AAAA  +P P  VA  PA    G
Sbjct: 358 ARSPFSIE--SIIGGSLGPAAAA--------AAAAQAAAAAQASPSPSPVAAPPAPGSSG 407

Query: 239 WVAAPDPGCTP 249
              A      P
Sbjct: 408 GGCAAQAAVGP 418



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 56/200 (28%), Positives = 72/200 (36%), Gaps = 16/200 (8%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPP-----ARASRAAGRRA 98
           G   A     PP   P   A      G G  L  P     + PP     A A+ AA    
Sbjct: 249 GDPAAAAALFPPAPPPPPHAYGYGPYGCGYGLQLPP----YAPPSALFAAAAAAAAAAAF 304

Query: 99  GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGG--ATAASSAGTRSVPARRLP- 155
            P  PP   P  G AA   R+      R  P G    G   A+AA + G  +    R P 
Sbjct: 305 HPHSPPPPPPPHGAAAELARTAFG--YRPHPLGAALPGPLPASAAKAGGPGASALARSPF 362

Query: 156 --PPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAA 213
                 G SLG  + A     +AA  ++  S    AA P PG+   G      VG A A 
Sbjct: 363 SIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAAL 422

Query: 214 PPAAAASVAPPPPAVAGAPA 233
             +  A+ A    +V+ + A
Sbjct: 423 TRSLVAAAAAAASSVSSSAA 442


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 66/226 (29%), Positives = 73/226 (32%), Gaps = 39/226 (17%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GP G      PP   PA + G Q   G  G    P  S   GP            GP GP
Sbjct: 201 GPMGPMGPRGPP--GPAGAPGPQGFQGNPGEPGEPGVSGPMGP-----------RGPPGP 247

Query: 104 PCRAPGRGRA-----AATRRSPAPGTARGSPA-----GVERAGGAT----AASSAGTRSV 149
           P +    G A     A  R  P P  ARG P      GV+   G      A   AG   V
Sbjct: 248 PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV 307

Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGF 209
                 P   G+    G R L        P   + +R     PGP  P    PG  PVG 
Sbjct: 308 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP----PG--PVG- 360

Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255
                PA        P A   A     RG   A  P   PGT  +P
Sbjct: 361 -----PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 401



 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 65/228 (28%), Positives = 74/228 (32%), Gaps = 36/228 (15%)

Query: 44  GPAGARRGHSPP-------TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPA-RASRAAG 95
           GP G R    PP              AG +  PG  G   FP      G    R      
Sbjct: 237 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD 296

Query: 96  RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155
              G AG P    G   +     SP P   RG P    R G A AA + G    P    P
Sbjct: 297 GAKGEAGAP-GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 355

Query: 156 P----PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGAPRP----GAPGTWP 206
           P    P GG        A    G     R P  ++     PG PG+P P    G PGT  
Sbjct: 356 PGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 414

Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENA 254
           +       P A  S     P +AGAP          P P   PG + A
Sbjct: 415 I-------PGAKGSAG--APGIAGAP--------GFPGPRGPPGPQGA 445



 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 67/228 (29%), Positives = 77/228 (33%), Gaps = 27/228 (11%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           G  G      PP   PA  AG +   GA GP  F       GPP       G + G  G 
Sbjct: 633 GKDGETGAAGPP--GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE-----GGKPGDQGV 685

Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
           P  A   G          PG  RGSP      G      + GT        P    G   
Sbjct: 686 PGEAGAPGLVGPRGERGFPG-ERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG 744

Query: 164 GAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAP-RPGAPG-TWPVGFAVAAPPAAAAS 220
             G + +     AA    P   R      GP GAP + G  G T P+G     PP  A +
Sbjct: 745 PPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG-----PPGPAGA 799

Query: 221 ------VAPPPPA-VAGAPAA-AFRGWVAAPDP---GCTPGTENAPAS 257
                 V PP PA  AGA  A   RG    P P      PG +  P +
Sbjct: 800 NGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 847



 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 68/246 (27%), Positives = 80/246 (32%), Gaps = 42/246 (17%)

Query: 44   GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR--ASRAAGRRA--G 99
            GP+GA     P  +A     G    PG  G   FP      G P +  A  A+G R   G
Sbjct: 963  GPSGAEGPPGPQGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG 1020

Query: 100  PAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCG 159
            P GPP      G A    R  +PG A G P     AG        G    P    PP   
Sbjct: 1021 PVGPPGLT---GPAGEPGREGSPG-ADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1076

Query: 160  GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR--------------------- 198
            G +   G +  R    A  P  PS       + GP  PR                     
Sbjct: 1077 GPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFT 1136

Query: 199  -----PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGA---PAAAFRGWVAAPDPGCTPG 250
                 PG PG  P G   A+ PA  +    PP  V  +    A    G +  P P    G
Sbjct: 1137 GLQGLPGPPG--PSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSG 1194

Query: 251  TENAPA 256
             E  PA
Sbjct: 1195 -ETGPA 1199



 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 59/202 (29%), Positives = 70/202 (34%), Gaps = 22/202 (10%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GPAGA    +P T     + GS   PG  G   FP      GP         +  G  G 
Sbjct: 402 GPAGA--SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK--GQTGE 457

Query: 104 PCRAPGRGRAAATRRSPAPGTARGSP--AGVE-------RAGGATAASSAGTRSVPARRL 154
           P  A  +G     +  P P   +G+P  AG E         GG       G R  P  R 
Sbjct: 458 PGIAGFKGEQGP-KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRG 516

Query: 155 PPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGA----PRPGAPGTWPVGF 209
            P   G +   G+   R P   A P+  +        PG PGA     RPG  G  P G 
Sbjct: 517 FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG--PQG- 573

Query: 210 AVAAPPAAAASVAPPPPAVAGA 231
            V    A      P PP   GA
Sbjct: 574 KVGPSGAPGEDGRPGPPGPQGA 595



 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 62/220 (28%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 44   GPAGARRGHSPPTVAPAASA-GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
            G  G+     PP    AA   G +   GA G         A GPP           GPAG
Sbjct: 1035 GREGSPGADGPPGRDGAAGVKGDRGETGAVG------APGAPGPPG--------SPGPAG 1080

Query: 103  PPCRAPGRGRAAA--TRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR------- 153
            P  +   RG A A        P  ARG        G    A   G R +   R       
Sbjct: 1081 PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG 1140

Query: 154  LPPPCG-----GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVG 208
            LP P G     G S  AG    R P     P     +       GP  PR  +  T P G
Sbjct: 1141 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG 1200

Query: 209  FAVAAPPAAAASVAPPPPAVAGAPAAAFRGW---VAAPDP 245
                 PP       PP P   G   +AF G       PDP
Sbjct: 1201 -----PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1235



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 71/261 (27%), Positives = 87/261 (33%), Gaps = 57/261 (21%)

Query: 44   GPAGARR--GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAA------WGPPARASRAAG 95
            GP G R   G   P  AP    G     G  GP+  P  + A       GPP  A  A  
Sbjct: 762  GPKGDRGDVGEKGPEGAPGKDGGR----GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 817

Query: 96   RRA----GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151
            R A    G  GPP  A   G A        PG A+G      + G A A    G    P 
Sbjct: 818  RGAPGERGETGPPGPA---GFAGPPGADGQPG-AKGEQGEAGQKGDAGAPGPQGPSGAPG 873

Query: 152  RRLPPPCGGTSLGAGSRALRRPGSAALPRS-----PSSSRRWAAMPGPGAPR-----PGA 201
             + P    G     G++    PG+   P +     P  S      PGP  P       GA
Sbjct: 874  PQGPTGVTGPKGARGAQG--PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGA 931

Query: 202  PG-TWPVGFA-------VAAPP---------AAAASVAPPPP-------AVAGAPA-AAF 236
             G + P G A        A PP           + +  PP P        + G P     
Sbjct: 932  RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991

Query: 237  RGWVAAPDPGCTPGTENAPAS 257
            RG+   P P   PG + AP +
Sbjct: 992  RGFPGLPGPSGEPGKQGAPGA 1012


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 66/226 (29%), Positives = 73/226 (32%), Gaps = 39/226 (17%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GP G      PP   PA + G Q   G  G    P  S   GP            GP GP
Sbjct: 132 GPMGPMGPRGPP--GPAGAPGPQGFQGNPGEPGEPGVSGPMGP-----------RGPPGP 178

Query: 104 PCRAPGRGRA-----AATRRSPAPGTARGSPA-----GVERAGGAT----AASSAGTRSV 149
           P +    G A     A  R  P P  ARG P      GV+   G      A   AG   V
Sbjct: 179 PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV 238

Query: 150 PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGF 209
                 P   G+    G R L        P   + +R     PGP  P    PG  PVG 
Sbjct: 239 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP----PG--PVG- 291

Query: 210 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255
                PA        P A   A     RG   A  P   PGT  +P
Sbjct: 292 -----PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 332



 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 65/228 (28%), Positives = 74/228 (32%), Gaps = 36/228 (15%)

Query: 44  GPAGARRGHSPP-------TVAPAASAGSQEHPGAGGPLCFPARSAAWGPPA-RASRAAG 95
           GP G R    PP              AG +  PG  G   FP      G    R      
Sbjct: 168 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD 227

Query: 96  RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155
              G AG P    G   +     SP P   RG P    R G A AA + G    P    P
Sbjct: 228 GAKGEAGAP-GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 286

Query: 156 P----PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGAPRP----GAPGTWP 206
           P    P GG        A    G     R P  ++     PG PG+P P    G PGT  
Sbjct: 287 PGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 345

Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENA 254
           +       P A  S     P +AGAP          P P   PG + A
Sbjct: 346 I-------PGAKGSAG--APGIAGAP--------GFPGPRGPPGPQGA 376



 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 67/228 (29%), Positives = 77/228 (33%), Gaps = 27/228 (11%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           G  G      PP   PA  AG +   GA GP  F       GPP       G + G  G 
Sbjct: 564 GKDGETGAAGPP--GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGE-----GGKPGDQGV 616

Query: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
           P  A   G          PG  RGSP      G      + GT        P    G   
Sbjct: 617 PGEAGAPGLVGPRGERGFPG-ERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG 675

Query: 164 GAGSRALRRPGSAALPRSPSSSRRWAAMPGP-GAP-RPGAPG-TWPVGFAVAAPPAAAAS 220
             G + +     AA    P   R      GP GAP + G  G T P+G     PP  A +
Sbjct: 676 PPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG-----PPGPAGA 730

Query: 221 ------VAPPPPA-VAGAPAA-AFRGWVAAPDP---GCTPGTENAPAS 257
                 V PP PA  AGA  A   RG    P P      PG +  P +
Sbjct: 731 NGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 778



 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 68/246 (27%), Positives = 80/246 (32%), Gaps = 42/246 (17%)

Query: 44   GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPAR--ASRAAGRRA--G 99
            GP+GA     P  +A     G    PG  G   FP      G P +  A  A+G R   G
Sbjct: 894  GPSGAEGPPGPQGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG 951

Query: 100  PAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCG 159
            P GPP      G A    R  +PG A G P     AG        G    P    PP   
Sbjct: 952  PVGPPGLT---GPAGEPGREGSPG-ADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1007

Query: 160  GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR--------------------- 198
            G +   G +  R    A  P  PS       + GP  PR                     
Sbjct: 1008 GPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFT 1067

Query: 199  -----PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGA---PAAAFRGWVAAPDPGCTPG 250
                 PG PG  P G   A+ PA  +    PP  V  +    A    G +  P P    G
Sbjct: 1068 GLQGLPGPPG--PSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSG 1125

Query: 251  TENAPA 256
             E  PA
Sbjct: 1126 -ETGPA 1130



 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 59/202 (29%), Positives = 70/202 (34%), Gaps = 22/202 (10%)

Query: 44  GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
           GPAGA    +P T     + GS   PG  G   FP      GP         +  G  G 
Sbjct: 333 GPAGA--SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK--GQTGE 388

Query: 104 PCRAPGRGRAAATRRSPAPGTARGSP--AGVE-------RAGGATAASSAGTRSVPARRL 154
           P  A  +G     +  P P   +G+P  AG E         GG       G R  P  R 
Sbjct: 389 PGIAGFKGEQGP-KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRG 447

Query: 155 PPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG-PGA----PRPGAPGTWPVGF 209
            P   G +   G+   R P   A P+  +        PG PGA     RPG  G  P G 
Sbjct: 448 FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG--PQG- 504

Query: 210 AVAAPPAAAASVAPPPPAVAGA 231
            V    A      P PP   GA
Sbjct: 505 KVGPSGAPGEDGRPGPPGPQGA 526



 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 62/220 (28%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 44   GPAGARRGHSPPTVAPAASA-GSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
            G  G+     PP    AA   G +   GA G         A GPP           GPAG
Sbjct: 966  GREGSPGADGPPGRDGAAGVKGDRGETGAVG------APGAPGPPG--------SPGPAG 1011

Query: 103  PPCRAPGRGRAAA--TRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARR------- 153
            P  +   RG A A        P  ARG        G    A   G R +   R       
Sbjct: 1012 PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG 1071

Query: 154  LPPPCG-----GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVG 208
            LP P G     G S  AG    R P     P     +       GP  PR  +  T P G
Sbjct: 1072 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG 1131

Query: 209  FAVAAPPAAAASVAPPPPAVAGAPAAAFRGW---VAAPDP 245
                 PP       PP P   G   +AF G       PDP
Sbjct: 1132 -----PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1166



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 71/261 (27%), Positives = 87/261 (33%), Gaps = 57/261 (21%)

Query: 44  GPAGARR--GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAA------WGPPARASRAAG 95
           GP G R   G   P  AP    G     G  GP+  P  + A       GPP  A  A  
Sbjct: 693 GPKGDRGDVGEKGPEGAPGKDGGR----GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 748

Query: 96  RRA----GPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151
           R A    G  GPP  A   G A        PG A+G      + G A A    G    P 
Sbjct: 749 RGAPGERGETGPPGPA---GFAGPPGADGQPG-AKGEQGEAGQKGDAGAPGPQGPSGAPG 804

Query: 152 RRLPPPCGGTSLGAGSRALRRPGSAALPRS-----PSSSRRWAAMPGPGAPR-----PGA 201
            + P    G     G++    PG+   P +     P  S      PGP  P       GA
Sbjct: 805 PQGPTGVTGPKGARGAQG--PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGA 862

Query: 202 PG-TWPVGFA-------VAAPP---------AAAASVAPPPP-------AVAGAPA-AAF 236
            G + P G A        A PP           + +  PP P        + G P     
Sbjct: 863 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 922

Query: 237 RGWVAAPDPGCTPGTENAPAS 257
           RG+   P P   PG + AP +
Sbjct: 923 RGFPGLPGPSGEPGKQGAPGA 943


>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
          Length = 261

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 60/182 (32%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 47  GARRGHSPPTVAPA-----ASAGSQEHPGAGGPLCFPARS--AAWGPPARASRAAGRRAG 99
           GARRG  P   AP       + GS   P    P C P R   AA   P R  R   R   
Sbjct: 46  GARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRR 105

Query: 100 PAGPPCR----------APGRGRAAATRRSPAPGTAR----GSPAGVERAGGATAASSAG 145
           P G P            APGR  A A     APG AR    G   G    GG  +    G
Sbjct: 106 PGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGG 165

Query: 146 TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALP----RSPSSSRRW--AAMPGPGAPRP 199
           T   P  R P    G       RA    G+AA P      P  S     A   GP +PR 
Sbjct: 166 TVG-PGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRD 224

Query: 200 GA 201
           GA
Sbjct: 225 GA 226



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 41/132 (31%), Positives = 49/132 (37%), Gaps = 36/132 (27%)

Query: 48  ARRGHSPPTVAPA---ASAGSQEHPGA-----GGPLCFPA----RSAAWGPPARASRAAG 95
           A  G + P VA A     +G + HPG      GG    P      +A  G P R  RAA 
Sbjct: 131 ALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAE 190

Query: 96  RRAGPAGPPCRAPG-----RGRAAATR--RSPAPGTARGS---PAGVERAGGATAASSAG 145
            R   A PP    G      G  A T+  +SP  G   G+   P  V  +GG        
Sbjct: 191 TRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGG-------- 242

Query: 146 TRSVPARRLPPP 157
                 R LPPP
Sbjct: 243 ------RPLPPP 248


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 63/219 (28%), Positives = 78/219 (35%), Gaps = 44/219 (20%)

Query: 51  GHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
           G  PP   P    G   H        P  G    +P   A   PP   S+ +  +AGP G
Sbjct: 508 GPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPH--SQVSYSQAGPNG 565

Query: 103 PPCRA-------------------PGRGRAAATRRSPAPGTARGSPAGVERAGGATAASS 143
           PP  +                   P +G   A    P   T   S A +       A+S 
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSP 625

Query: 144 AG--TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSR-------RWAAMP-G 193
           AG  T S P    PPP G  +   G+     P     P SP S R       R  + P G
Sbjct: 626 AGYKTASPPG---PPPYGKRAPSPGAYKTATPPGYK-PGSPPSFRTGTPPGYRGTSPPAG 681

Query: 194 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232
           PG  +PG+P   P G    A P+   S+ PPP A A  P
Sbjct: 682 PGTFKPGSPTVGP-GPLPPAGPSGLPSLPPPPAAPASGP 719



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 47/195 (24%), Positives = 66/195 (33%), Gaps = 22/195 (11%)

Query: 53  SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
           +PPT  P    G    P A  P  FP  +    PP          A P       PG G 
Sbjct: 270 APPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASP-------PGLG- 321

Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
                  P PG      A  +  GG       G    P+    PP    S  A +  +R 
Sbjct: 322 -----AQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPP---ASSSAPAPPMRF 373

Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPRPGAPG--TWPVGFAVAAPPAAAASVAPPPPAVAG 230
           P S++   S ++S   ++     +P P +    ++P  F    PP  + SV+  PP    
Sbjct: 374 PYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSF----PPPTSLSVSNQPPKYTQ 429

Query: 231 APAAAFRGWVAAPDP 245
               +   W   P P
Sbjct: 430 PSLPSQAVWSQGPPP 444



 Score = 31.6 bits (70), Expect = 0.71
 Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 15/113 (13%)

Query: 154 LPPPCGGTSLG-AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWP------ 206
           LPPP    S   AG        S+    S S      + P P     GAP  +P      
Sbjct: 549 LPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVT 608

Query: 207 --------VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251
                   V   VA+ PA   + +PP P   G  A +   +  A  PG  PG+
Sbjct: 609 TSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGS 661



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 42/158 (26%), Positives = 56/158 (35%), Gaps = 34/158 (21%)

Query: 128 SPAGVERAGGATAASSAGTRSVPARRL-PPPCGGTSLGAGSRALRRPGSAA--------- 177
           SP  VE      + SS+G    PAR   PPP    S        R+P ++          
Sbjct: 137 SPGSVEN----DSDSSSGLSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT 192

Query: 178 ---LPRSPSSSRRWAAMPGPGAPRPGA-PGTWPVGFAVAAPP------AAAASVA----- 222
               P  P +SR + A PG   P P   PG    G  ++ PP       AA+SV      
Sbjct: 193 GYHAPMEPPTSRMFQAPPGAPPPHPQLYPG--GTGGVLSGPPMGPKGGGAASSVGGPNGG 250

Query: 223 ---PPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
              PPP       ++   G      P    G  N P++
Sbjct: 251 KQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSA 288



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 56/219 (25%), Positives = 71/219 (32%), Gaps = 51/219 (23%)

Query: 43  LGPAGARRGHSPPTVAPAAS----------AGSQEHPGAGGPLCFPARSAAWGPPARASR 92
           L    AR  H PP   P+            A  + HP            A   PP     
Sbjct: 151 LSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT----GYHAPMEPPTSRMF 206

Query: 93  AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152
            A   A P  P     G G           G   G P G +  GG  A+S  G      +
Sbjct: 207 QAPPGAPPPHPQLYPGGTG-----------GVLSGPPMGPK--GGGAASSVGGPNG--GK 251

Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVA 212
           + PPP    S+ +         S A P  P ++      P  G   P AP   P  F   
Sbjct: 252 QHPPPTTPISVSSSG------ASGAPPTKPPTT------PVGGGNLPSAPP--PANF--- 294

Query: 213 APPAAAASVAPPPPAV--AGAPAAAFRGWVAAPDPGCTP 249
             P    ++ PPPPA+      +A+  G  A P PG  P
Sbjct: 295 --PHVTPNL-PPPPALRPLNNASASPPGLGAQPLPGHLP 330


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 63/219 (28%), Positives = 78/219 (35%), Gaps = 44/219 (20%)

Query: 51  GHSPPTVAPAASAGSQEH--------PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAG 102
           G  PP   P    G   H        P  G    +P   A   PP   S+ +  +AGP G
Sbjct: 508 GPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPH--SQVSYSQAGPNG 565

Query: 103 PPCRA-------------------PGRGRAAATRRSPAPGTARGSPAGVERAGGATAASS 143
           PP  +                   P +G   A    P   T   S A +       A+S 
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSP 625

Query: 144 AG--TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSR-------RWAAMP-G 193
           AG  T S P    PPP G  +   G+     P     P SP S R       R  + P G
Sbjct: 626 AGYKTASPPG---PPPYGKRAPSPGAYKTATPPGYK-PGSPPSFRTGTPPGYRGTSPPAG 681

Query: 194 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232
           PG  +PG+P   P G    A P+   S+ PPP A A  P
Sbjct: 682 PGTFKPGSPTVGP-GPLPPAGPSGLPSLPPPPAAPASGP 719



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 47/195 (24%), Positives = 66/195 (33%), Gaps = 22/195 (11%)

Query: 53  SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
           +PPT  P    G    P A  P  FP  +    PP          A P       PG G 
Sbjct: 270 APPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASP-------PGLG- 321

Query: 113 AAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRR 172
                  P PG      A  +  GG       G    P+    PP    S  A +  +R 
Sbjct: 322 -----AQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPP---ASSSAPAPPMRF 373

Query: 173 PGSAALPRSPSSSRRWAAMPGPGAPRPGAPG--TWPVGFAVAAPPAAAASVAPPPPAVAG 230
           P S++   S ++S   ++     +P P +    ++P  F    PP  + SV+  PP    
Sbjct: 374 PYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSF----PPPTSLSVSNQPPKYTQ 429

Query: 231 APAAAFRGWVAAPDP 245
               +   W   P P
Sbjct: 430 PSLPSQAVWSQGPPP 444



 Score = 31.6 bits (70), Expect = 0.71
 Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 15/113 (13%)

Query: 154 LPPPCGGTSLG-AGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWP------ 206
           LPPP    S   AG        S+    S S      + P P     GAP  +P      
Sbjct: 549 LPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVT 608

Query: 207 --------VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 251
                   V   VA+ PA   + +PP P   G  A +   +  A  PG  PG+
Sbjct: 609 TSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGS 661



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 42/158 (26%), Positives = 56/158 (35%), Gaps = 34/158 (21%)

Query: 128 SPAGVERAGGATAASSAGTRSVPARRL-PPPCGGTSLGAGSRALRRPGSAA--------- 177
           SP  VE      + SS+G    PAR   PPP    S        R+P ++          
Sbjct: 137 SPGSVEN----DSDSSSGLSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT 192

Query: 178 ---LPRSPSSSRRWAAMPGPGAPRPGA-PGTWPVGFAVAAPP------AAAASVA----- 222
               P  P +SR + A PG   P P   PG    G  ++ PP       AA+SV      
Sbjct: 193 GYHAPMEPPTSRMFQAPPGAPPPHPQLYPG--GTGGVLSGPPMGPKGGGAASSVGGPNGG 250

Query: 223 ---PPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
              PPP       ++   G      P    G  N P++
Sbjct: 251 KQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSA 288



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 56/219 (25%), Positives = 71/219 (32%), Gaps = 51/219 (23%)

Query: 43  LGPAGARRGHSPPTVAPAAS----------AGSQEHPGAGGPLCFPARSAAWGPPARASR 92
           L    AR  H PP   P+            A  + HP            A   PP     
Sbjct: 151 LSQGPARPYHPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPT----GYHAPMEPPTSRMF 206

Query: 93  AAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR 152
            A   A P  P     G G           G   G P G +  GG  A+S  G      +
Sbjct: 207 QAPPGAPPPHPQLYPGGTG-----------GVLSGPPMGPK--GGGAASSVGGPNG--GK 251

Query: 153 RLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVA 212
           + PPP    S+ +         S A P  P ++      P  G   P AP   P  F   
Sbjct: 252 QHPPPTTPISVSSSG------ASGAPPTKPPTT------PVGGGNLPSAPP--PANF--- 294

Query: 213 APPAAAASVAPPPPAV--AGAPAAAFRGWVAAPDPGCTP 249
             P    ++ PPPPA+      +A+  G  A P PG  P
Sbjct: 295 --PHVTPNL-PPPPALRPLNNASASPPGLGAQPLPGHLP 330


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 56/232 (24%), Positives = 70/232 (30%), Gaps = 38/232 (16%)

Query: 19  DFRAVVPQVNELQRKGLFWRYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFP 78
           DFR+  P +   Q +G        +GP   + G  PP   P      Q+ P    P   P
Sbjct: 30  DFRSPPPGMGLNQNRG-------PMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQP 82

Query: 79  ARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGA 138
                                   PP + P   +    ++ P P      P   +  G A
Sbjct: 83  ------------------------PPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPA 118

Query: 139 TAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPR 198
               SA   S  A    PP  G   G+G      PG    P  P+ +      P P  P 
Sbjct: 119 PGVGSAPPASSSAPPATPPTSGAPPGSG------PGPTPTP-PPAVTSAPPGAPPPTPPS 171

Query: 199 PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250
            G P T P       PPAA     P P    G            P PG  PG
Sbjct: 172 SGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPG 223



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 38/130 (29%), Positives = 51/130 (39%), Gaps = 18/130 (13%)

Query: 43  LGPAGARRGHSPPTVAPAASAGSQEHPGAG-GPLCFP---ARSAAWGPPARASRAAG--- 95
           +G A      +PP   P + A     PG+G GP   P     SA  G P     ++G   
Sbjct: 121 VGSAPPASSSAPPATPPTSGAP----PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPT 176

Query: 96  ---RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGS--PAGVERAGGATAASSAGTRSVP 150
              +  GP  PP   PG G     ++ P PG  +G   P G +  GG   ++  G    P
Sbjct: 177 TPPQAGGPPPPPAAVPGPG--PGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPP 234

Query: 151 ARRLPPPCGG 160
            R    P GG
Sbjct: 235 HRGGGEPRGG 244



 Score = 37.0 bits (84), Expect = 0.017
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 179 PRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRG 238
           P  P  S +     GPG P PG          V + P A++S  P  P  +GAP  +  G
Sbjct: 100 PPPPQDSSKPVVAQGPG-PAPG----------VGSAPPASSSAPPATPPTSGAPPGSGPG 148

Query: 239 WVAAPDPGCTPGTENAP 255
               P P  T     AP
Sbjct: 149 PTPTPPPAVTSAPPGAP 165



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 44/169 (26%), Positives = 53/169 (31%), Gaps = 29/169 (17%)

Query: 92  RAAGRRAGPAGPPCRAPGRGRAAATR-RSPAPGTARGSPAGVERAGGATAASSAGTRSVP 150
           R   R  G  G   R  G GR      RSP PG       G    G          +S P
Sbjct: 5   RFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPG--------QSGP 56

Query: 151 ARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGA----PRPGAPGTWP 206
              +PPP          +  ++P     P       +    P P      P P    + P
Sbjct: 57  KPPIPPP-------PPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKP 109

Query: 207 VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 255
           V   VA  P  A  V   PPA + AP A        P  G  PG+   P
Sbjct: 110 V---VAQGPGPAPGVGSAPPASSSAPPA------TPPTSGAPPGSGPGP 149


>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
          Length = 411

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 63/232 (27%), Positives = 83/232 (35%), Gaps = 24/232 (10%)

Query: 45  PAGARRGHSPPTVAPAASAGSQEH------PGAGGPLCFPARSAAWGPPA-RASRAAGRR 97
           P    RG     + PAASA + +       P A   +C  +   AWG P  RA +     
Sbjct: 34  PGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTIC--SLHQAWGGPGCRAQKGIPAA 91

Query: 98  AGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPP 157
             P   P  AP  G A      P PG+  G   G  +      A   G  S P + +P P
Sbjct: 92  LSPGPGPIPAPIPGPAQIP--GPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQ-IPGP 148

Query: 158 CGGTSLGAGSRALRRPGSAALPRS-----PSSSRRWAAMPGP-GAPRPG---APGTWPVG 208
             G   G  S     PG  + P S     P        +PGP   P PG    P   P+ 
Sbjct: 149 FRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIP 208

Query: 209 FAVAAP---PAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
             ++ P   P       P P  ++G       G ++ P+PG  PG    P S
Sbjct: 209 GPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260



 Score = 36.2 bits (82), Expect = 0.029
 Identities = 58/205 (28%), Positives = 70/205 (34%), Gaps = 26/205 (12%)

Query: 47  GARRGHSP-PTVAPAASAGSQEHPGAG---GPLCFPARSAAWGPPARASRAAGRRAGPAG 102
           G  RG  P P   PA   G    P +G   GP+  P      GP       +G   GP  
Sbjct: 147 GPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGP------ISGPIPGPIS 200

Query: 103 PPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRL-PPPCGGT 161
            P   P  G  +     P PG   G   G     G       G  S P   L P P  G 
Sbjct: 201 VPIPGPIPGPISGPISGPNPGPIPGPIPGP--ISGPNPGPIPGPISGPNPGLIPGPIPGP 258

Query: 162 SLGAGSRALRRPGSAALPR-----------SPSSSRRWAAMPGPGAPRPGAPGTWPVGFA 210
             G G      P  A +P            SP   R   ++PG  AP  G PG+ P   +
Sbjct: 259 ISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGL-APILG-PGSGPGSGS 316

Query: 211 VAAPPAAAASVAPPPPAVAGAPAAA 235
           V AP     S+  P P    +P A+
Sbjct: 317 VPAPIPGPGSLPAPAPLWPQSPDAS 341



 Score = 33.1 bits (74), Expect = 0.24
 Identities = 48/148 (32%), Positives = 58/148 (39%), Gaps = 21/148 (14%)

Query: 44  GP-AGARRGHSP-PTVAPAASAGSQEHPGA-GGPLCFPARSAAWGPPARASRAAGRRAGP 100
           GP +G   G +P P   P     S  +PG   GP+  P      GP        G   GP
Sbjct: 209 GPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGP 268

Query: 101 AGPPCRAPGRGRAAATRRSPAPGTAR--GSPAGVERAGGATAASSAGTRSVPARRLPPPC 158
              P + PG GR        +PG  R  GS  G+    G    S  G+ SVPA   P P 
Sbjct: 269 IPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILG--PGSGPGSGSVPA---PIP- 322

Query: 159 GGTSLGAGSRALRRPGSAAL-PRSPSSS 185
                G GS     P  A L P+SP +S
Sbjct: 323 -----GPGS----LPAPAPLWPQSPDAS 341


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,983,635
Number of Sequences: 37866
Number of extensions: 1196600
Number of successful extensions: 17567
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 2164
Number of HSP's that attempted gapping in prelim test: 8060
Number of HSP's gapped (non-prelim): 7629
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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