Guide to the Human Genome
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Name: LOC100133756 Sequence: fasta or formatted (673aa) NCBI GI: 239752594
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         72           3
 C cysteine            0.0          0           0
 D aspartate           0.7          5           1
 E glutamate           0.3          2           1
 F phenylalanine       0.0          0           0
 G glycine             4.9         33           1
 H histidine           0.0          0           0
 I isoleucine          1.2          8           1
 K lysine              1.5         10           1
 L leucine             6.8         46           2
 M methionine          4.6         31           2
 N asparagine          0.0          0           0
 P proline            16.6        112           2
 Q glutamine           0.3          2           1
 R arginine           10.7         72           2
 S serine             20.8        140           3
 T threonine          20.4        137           3
 V valine              0.3          2           1
 W tryptophan          0.1          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
MUC2                  0.153   mucin 2 precursor 
MUC17                 0.118   mucin 17 
LOC100294420          0.115   PREDICTED: similar to mucin 2 
MUC5B                 0.115   mucin 5, subtype B, tracheobronchial 
NACA                  0.106   nascent polypeptide-associated complex alpha subuni...
MUC5AC                0.101   mucin 5AC 
MUC6                  0.096   mucin 6, gastric 
FLJ22184              0.094   PREDICTED: hypothetical protein FLJ22184 
PRG4                  0.086   proteoglycan 4 isoform D 
PRG4                  0.086   proteoglycan 4 isoform C 
PRG4                  0.086   proteoglycan 4 isoform B 
PRG4                  0.086   proteoglycan 4 isoform A 
MUC3A                 0.086   PREDICTED: mucin 3A, intestinal 
FLJ22184              0.085   PREDICTED: hypothetical protein FLJ22184 
TRIOBP                0.084   TRIO and F-actin binding protein isoform 6 
MUC12                 0.083   PREDICTED: mucin 12 
LOC100131514          0.079   PREDICTED: similar to hCG1747327, partial 
MUC3A                 0.078   PREDICTED: mucin 3A, cell surface associated, parti...
MLL2                  0.075   myeloid/lymphoid or mixed-lineage leukemia 2 
MUC4                  0.075   mucin 4 isoform a 
MUC12                 0.074   PREDICTED: mucin 12, cell surface associated 
LOC100128719          0.073   PREDICTED: hypothetical protein, partial 
LOC100128719          0.073   PREDICTED: hypothetical protein, partial 
FLJ22184              0.072   PREDICTED: hypothetical protein LOC80164 
SRRM2                 0.072   splicing coactivator subunit SRm300 
POLR2A                0.072   DNA-directed RNA polymerase II A 
DPCR1                 0.071   diffuse panbronchiolitis critical region 1 protein ...
LOC729792             0.070   PREDICTED: hypothetical protein 
LOC100294136          0.070   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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