Guide to the Human Genome
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Name: KRTAP4-6 Sequence: fasta or formatted (288aa) NCBI GI: 169211815
Description:

PREDICTED: keratin associated protein 4.6

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            32.3         93           4
 C cysteine            3.5         10           1
 D aspartate           2.8          8           1
 E glutamate           2.8          8           1
 F phenylalanine       1.0          3           1
 G glycine             2.4          7           1
 H histidine           0.7          2           1
 I isoleucine          1.4          4           1
 K lysine              1.7          5           1
 L leucine             6.6         19           2
 M methionine          0.7          2           1
 N asparagine          1.0          3           1
 P proline            16.7         48           2
 Q glutamine           2.4          7           1
 R arginine            3.5         10           1
 S serine              8.0         23           1
 T threonine           3.8         11           1
 V valine              6.9         20           3
 W tryptophan          0.7          2           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: keratin associated protein 4.6 
KRTAP4-9              0.458   PREDICTED: keratin associated protein 4-9 
AMOT                  0.103   angiomotin isoform 2 
AMOT                  0.103   angiomotin isoform 1 
TAF4                  0.100   TBP-associated factor 4 
C4orf40               0.096   hypothetical protein LOC401137 
KIAA0754              0.094   hypothetical protein LOC643314 
SRCAP                 0.090   Snf2-related CBP activator protein 
BAT2D1                0.089   HBxAg transactivated protein 2 
SAMD1                 0.089   sterile alpha motif domain containing 1 
FLJ22184              0.087   PREDICTED: hypothetical protein LOC80164 
BCORL1                0.087   BCL6 co-repressor-like 1 
FLJ22184              0.085   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.083   PREDICTED: hypothetical protein FLJ22184 
TMPRSS13              0.083   transmembrane protease, serine 13 
YLPM1                 0.077   YLP motif containing 1 
FAM48B1               0.076   hypothetical protein LOC100130302 
NACA                  0.076   nascent polypeptide-associated complex alpha subuni...
HOXA13                0.074   homeobox A13 
LOC100291479          0.072   PREDICTED: hypothetical protein XP_002348186 
FOXD1                 0.068   forkhead box D1 
CDKN1C                0.068   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.068   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.068   cyclin-dependent kinase inhibitor 1C isoform a 
MAZ                   0.068   MYC-associated zinc finger protein isoform 2 
MAZ                   0.068   MYC-associated zinc finger protein isoform 1 
COL6A3                0.061   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.061   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.061   alpha 3 type VI collagen isoform 4 precursor 
LOC100292122          0.059   PREDICTED: hypothetical protein XP_002345138 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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