Guide to the Human Genome
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Name: ANKRD56 Sequence: fasta or formatted (793aa) NCBI GI: 71274172
Description:

ankyrin repeat domain 56

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         90           5
 C cysteine            1.3         10           2
 D aspartate           4.3         34           2
 E glutamate           6.4         51           3
 F phenylalanine       1.8         14           1
 G glycine             8.2         65           3
 H histidine           2.8         22           1
 I isoleucine          1.5         12           1
 K lysine              4.8         38           2
 L leucine            10.1         80           2
 M methionine          0.1          1           1
 N asparagine          2.0         16           2
 P proline             9.8         78           2
 Q glutamine           4.8         38           5
 R arginine            9.0         71           5
 S serine             10.3         82           3
 T threonine           2.9         23           1
 V valine              5.3         42           2
 W tryptophan          2.0         16           1
 Y tyrosine            1.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat domain 56 
ANKRD43               0.070   ankyrin repeat domain 43 
ANKRD57               0.061   ankyrin repeat domain 57 
ANKRD58               0.048   ankyrin repeat domain 58 
LOC100293375          0.020   PREDICTED: hypothetical protein 
LOC100133885          0.020   PREDICTED: hypothetical protein 
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform c ...
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
TAF4                  0.018   TBP-associated factor 4 
KANK3                 0.018   ankyrin repeat domain 47 
ASB7                  0.018   ankyrin repeat and SOCS box-containing protein 7 iso...
HOXA13                0.018   homeobox A13 
ASB7                  0.018   ankyrin repeat and SOCS box-containing protein 7 iso...
BASP1                 0.017   brain abundant, membrane attached signal protein 1 [...
FANK1                 0.017   fibronectin type III and ankyrin repeat domains 1 [...
LOC100134702          0.016   PREDICTED: similar to mucin 
MAP7D1                0.016   MAP7 domain containing 1 
COL1A2                0.016   alpha 2 type I collagen 
SRRM1                 0.016   serine/arginine repetitive matrix 1 
TNKS1BP1              0.016   tankyrase 1-binding protein 1 
HACE1                 0.015   HECT domain and ankyrin repeat containing, E3 ubiqu...
PCLO                  0.015   piccolo isoform 2 
PCLO                  0.015   piccolo isoform 1 
BHLHE41               0.015   basic helix-loop-helix domain containing, class B, 3...
SCAF1                 0.015   SR-related CTD-associated factor 1 
CDKN2C                0.015   cyclin-dependent kinase inhibitor 2C 
CDKN2C                0.015   cyclin-dependent kinase inhibitor 2C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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