Guide to the Human Genome
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Name: FOXD1 Sequence: fasta or formatted (465aa) NCBI GI: 4758392
Description:

forkhead box D1

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.9         97          11
 C cysteine            1.1          5           1
 D aspartate           4.1         19           4
 E glutamate           6.0         28           4
 F phenylalanine       2.8         13           1
 G glycine            12.9         60           8
 H histidine           1.5          7           1
 I isoleucine          2.8         13           2
 K lysine              2.2         10           2
 L leucine             7.7         36           3
 M methionine          0.9          4           1
 N asparagine          2.2         10           1
 P proline            12.5         58           7
 Q glutamine           1.9          9           1
 R arginine            4.9         23           6
 S serine              8.2         38           3
 T threonine           2.4         11           1
 V valine              2.2         10           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.6         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box D1 
FOXD2                 0.324   forkhead box D2 
FOXD3                 0.306   forkhead box D3 
FOXD4L1               0.224   forkhead box D4-like 1 
FOXD4L3               0.219   forkhead box D4-like 3 
FOXD4L6               0.218   forkhead box D4-like 6 
FOXD4L5               0.217   forkhead box D4-like 5 
FOXD4L2               0.214   forkhead box D4-like 2 
FOXD4L4               0.214   forkhead box D4-like 4 
FOXE1                 0.209   forkhead box E1 
FOXD4                 0.207   forkhead box D4 
FOXL2                 0.198   forkhead box L2 
FOXE3                 0.190   forkhead box E3 
FOXF2                 0.185   forkhead box F2 
FOXA3                 0.176   forkhead box A3 
FOXC1                 0.174   forkhead box C1 
FOXB2                 0.172   forkhead box B2 
FOXF1                 0.165   forkhead box F1 
FOXA1                 0.165   forkhead box A1 
FOXA2                 0.160   forkhead box A2 isoform 2 
FOXA2                 0.160   forkhead box A2 isoform 1 
FOXI2                 0.158   forkhead box I2 
FOXC2                 0.155   forkhead box C2 
FOXL1                 0.153   forkhead box L1 
FOXB1                 0.151   forkhead box B1 
FOXS1                 0.149   forkhead box S1 
FOXQ1                 0.144   forkhead box Q1 
FOXI3                 0.144   forkhead box I3 
FOXG1                 0.139   forkhead box G1 
FOXI1                 0.128   forkhead box I1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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