Guide to the Human Genome
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Name: UNCX Sequence: fasta or formatted (531aa) NCBI GI: 122937321
Description:

UNC homeobox

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         86           7
 C cysteine            1.7          9           1
 D aspartate           4.5         24           1
 E glutamate           5.6         30           2
 F phenylalanine       3.2         17           1
 G glycine            12.2         65           4
 H histidine           2.8         15           3
 I isoleucine          0.8          4           1
 K lysine              4.7         25           3
 L leucine             7.2         38           2
 M methionine          1.1          6           2
 N asparagine          1.3          7           1
 P proline            15.8         84           4
 Q glutamine           2.4         13           1
 R arginine            5.1         27           3
 S serine              7.7         41           2
 T threonine           2.6         14           2
 V valine              3.4         18           2
 W tryptophan          0.6          3           1
 Y tyrosine            0.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   UNC homeobox 
PHOX2B                0.086   paired-like homeobox 2b 
RAX                   0.075   retina and anterior neural fold homeobox 
ARX                   0.073   aristaless related homeobox 
ALX4                  0.072   aristaless-like homeobox 4 
ALX3                  0.069   aristaless-like homeobox 3 
ALX1                  0.069   cartilage paired-class homeoprotein 1 
VSX2                  0.069   visual system homeobox 2 
OTP                   0.069   PREDICTED: orthopedia homeobox 
OTP                   0.069   orthopedia homeobox 
RAX2                  0.069   retina and anterior neural fold homeobox 2 
PHOX2A                0.068   paired-like homeobox 2a 
VSX1                  0.065   visual system homeobox 1 isoform a 
NACA                  0.065   nascent polypeptide-associated complex alpha subuni...
DMBX1                 0.064   diencephalon/mesencephalon homeobox 1 isoform b [Hom...
DMBX1                 0.064   diencephalon/mesencephalon homeobox 1 isoform a [Hom...
PITX3                 0.064   paired-like homeodomain 3 
TAF4                  0.063   TBP-associated factor 4 
SHOX2                 0.063   short stature homeobox 2 isoform a 
DRGX                  0.062   dorsal root ganglia homeobox 
SHOX2                 0.062   short stature homeobox 2 isoform b 
SHOX                  0.062   short stature homeobox isoform SHOXb 
SHOX                  0.062   short stature homeobox isoform SHOXa 
ESX1                  0.060   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
PAX7                  0.059   paired box 7 isoform 1 
PAX7                  0.059   paired box 7 isoform 2 
PAX7                  0.059   paired box 7 isoform 3 
PAX3                  0.058   paired box 3 isoform PAX3i 
PAX3                  0.058   paired box 3 isoform PAX3g 
PAX3                  0.058   paired box 3 isoform PAX3h 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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