Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TPRX1 Sequence: fasta or formatted (411aa) NCBI GI: 72004269
Description:

tetra-peptide repeat homeobox

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         26           2
 C cysteine            0.5          2           1
 D aspartate           1.7          7           2
 E glutamate           2.2          9           2
 F phenylalanine       1.5          6           1
 G glycine            16.8         69           2
 H histidine           1.0          4           1
 I isoleucine         10.0         41           2
 K lysine              1.2          5           2
 L leucine             7.1         29           3
 M methionine          1.0          4           1
 N asparagine          1.9          8           1
 P proline            26.0        107           1
 Q glutamine           5.4         22           3
 R arginine            4.1         17           2
 S serine              9.2         38           2
 T threonine           1.2          5           1
 V valine              1.9          8           1
 W tryptophan          0.7          3           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetra-peptide repeat homeobox 
FMN2                  0.132   formin 2 
BCORL1                0.105   BCL6 co-repressor-like 1 
PTPN23                0.099   protein tyrosine phosphatase, non-receptor type 23 [...
COL8A1                0.097   alpha 1 type VIII collagen precursor 
COL8A1                0.097   alpha 1 type VIII collagen precursor 
LOC100290496          0.094   PREDICTED: hypothetical protein XP_002348126 
PCLO                  0.092   piccolo isoform 2 
PCLO                  0.092   piccolo isoform 1 
SRCAP                 0.090   Snf2-related CBP activator protein 
COL4A5                0.088   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.088   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.088   type IV collagen alpha 5 isoform 3 precursor 
SFRS15                0.086   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.085   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.085   splicing factor, arginine/serine-rich 15 isoform 1 [...
SMARCA4               0.084   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.084   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.084   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.084   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.084   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.084   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.084   SWI/SNF-related matrix-associated actin-dependent re...
COL4A2                0.084   alpha 2 type IV collagen preproprotein 
SFPQ                  0.084   splicing factor proline/glutamine rich (polypyrimidin...
WBP11                 0.084   WW domain binding protein 11 
CDKN1C                0.082   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.082   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.082   cyclin-dependent kinase inhibitor 1C isoform a 
CPSF6                 0.082   cleavage and polyadenylation specific factor 6, 68 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press