Guide to the Human Genome
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Name: SYN1 Sequence: fasta or formatted (669aa) NCBI GI: 19924097
Description:

synapsin I isoform Ib

Referenced in:

Rab
Synapses

Other entries for this name:
alt prot [705aa] synapsin I isoform Ia
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         71           5
 C cysteine            0.4          3           1
 D aspartate           3.9         26           1
 E glutamate           2.5         17           2
 F phenylalanine       2.4         16           2
 G glycine            11.2         75           4
 H histidine           2.5         17           1
 I isoleucine          2.7         18           2
 K lysine              4.3         29           2
 L leucine             5.5         37           2
 M methionine          2.1         14           1
 N asparagine          2.5         17           1
 P proline            14.2         95           6
 Q glutamine           8.8         59           2
 R arginine            5.4         36           3
 S serine              7.9         53           2
 T threonine           4.5         30           2
 V valine              5.8         39           3
 W tryptophan          0.6          4           1
 Y tyrosine            1.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synapsin I isoform Ib 
SYN1                  0.988   synapsin I isoform Ia 
SYN2                  0.459   synapsin II isoform IIa 
SYN2                  0.436   synapsin II isoform IIb 
SYN3                  0.425   synapsin III isoform IIIg 
SYN3                  0.422   synapsin III isoform IIIa 
SYN3                  0.383   synapsin III isoform IIIc 
PRB3                  0.081   proline-rich protein BstNI subfamily 3 precursor [H...
PRB1                  0.076   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.075   proline-rich protein BstNI subfamily 2 
PRB4                  0.068   proline-rich protein BstNI subfamily 4 precursor [Ho...
SRRM1                 0.056   serine/arginine repetitive matrix 1 
NACA                  0.055   nascent polypeptide-associated complex alpha subuni...
WDR33                 0.055   WD repeat domain 33 isoform 1 
PCLO                  0.053   piccolo isoform 2 
PCLO                  0.053   piccolo isoform 1 
SFPQ                  0.053   splicing factor proline/glutamine rich (polypyrimidin...
CPSF6                 0.047   cleavage and polyadenylation specific factor 6, 68 ...
FLJ22184              0.047   PREDICTED: hypothetical protein FLJ22184 
TAF4                  0.047   TBP-associated factor 4 
PRB1                  0.047   proline-rich protein BstNI subfamily 1 isoform 2 pre...
COL2A1                0.047   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.047   collagen, type II, alpha 1 isoform 2 precursor [Hom...
WIPF1                 0.045   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.045   WAS/WASL interacting protein family, member 1 
MLL2                  0.045   myeloid/lymphoid or mixed-lineage leukemia 2 
COL3A1                0.045   collagen type III alpha 1 preproprotein 
COL10A1               0.045   type X collagen alpha 1 precursor 
SMARCA4               0.044   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.044   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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