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Search of human proteins with 239750867
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
(800 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 1651 0.0
gi|239756297 PREDICTED: hypothetical protein [Homo sapiens] 536 e-152
gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo ... 449 e-126
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 72 2e-12
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 71 3e-12
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 70 1e-11
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 70 1e-11
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 69 1e-11
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 69 2e-11
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 69 2e-11
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 69 2e-11
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 69 2e-11
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 67 9e-11
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 67 9e-11
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 67 9e-11
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 66 1e-10
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 66 1e-10
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 66 1e-10
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 64 7e-10
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 64 7e-10
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 64 7e-10
gi|48762934 alpha 2 type I collagen [Homo sapiens] 63 9e-10
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 62 2e-09
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 62 2e-09
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 62 2e-09
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 62 2e-09
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 62 2e-09
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 62 2e-09
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 62 2e-09
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 62 3e-09
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 1651 bits (4276), Expect = 0.0
Identities = 800/800 (100%), Positives = 800/800 (100%)
Query: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA
Sbjct: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
Query: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV
Sbjct: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
Query: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN
Sbjct: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
Query: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPPFVLTQSSRPTDMLLNSLATSLSSRRMPS 240
GQETECQDDCFLGKSDLQNFEELREPAGTGPPFVLTQSSRPTDMLLNSLATSLSSRRMPS
Sbjct: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPPFVLTQSSRPTDMLLNSLATSLSSRRMPS 240
Query: 241 SCPMTIFMRCRIRSRSPPLLGSSLGCPRSGAPRMFIVYHVAAGLPILPPAGHTLRLPPRS 300
SCPMTIFMRCRIRSRSPPLLGSSLGCPRSGAPRMFIVYHVAAGLPILPPAGHTLRLPPRS
Sbjct: 241 SCPMTIFMRCRIRSRSPPLLGSSLGCPRSGAPRMFIVYHVAAGLPILPPAGHTLRLPPRS 300
Query: 301 PPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQG 360
PPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQG
Sbjct: 301 PPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQG 360
Query: 361 LPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPS 420
LPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPS
Sbjct: 361 LPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPS 420
Query: 421 PKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL 480
PKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL
Sbjct: 421 PKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL 480
Query: 481 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR 540
APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR
Sbjct: 481 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR 540
Query: 541 GGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEDVCVVT 600
GGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEDVCVVT
Sbjct: 541 GGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEDVCVVT 600
Query: 601 EYLWEGNSDPKVGSSDPVIPGTKADKKTKMGPMSEEDKRERRSLGVNPRDCSSLDDSSPS 660
EYLWEGNSDPKVGSSDPVIPGTKADKKTKMGPMSEEDKRERRSLGVNPRDCSSLDDSSPS
Sbjct: 601 EYLWEGNSDPKVGSSDPVIPGTKADKKTKMGPMSEEDKRERRSLGVNPRDCSSLDDSSPS 660
Query: 661 GSAVLYPGLAASWSPQQSGTGSQNCLHPIGLSCCLPGLLAGLISPCSSDPTKLGYCVIAT 720
GSAVLYPGLAASWSPQQSGTGSQNCLHPIGLSCCLPGLLAGLISPCSSDPTKLGYCVIAT
Sbjct: 661 GSAVLYPGLAASWSPQQSGTGSQNCLHPIGLSCCLPGLLAGLISPCSSDPTKLGYCVIAT 720
Query: 721 YQGEKQRLSTASGPQGRVFPPQKLLPLEMQERKPTPYPPRKRSVDHTGSSQQEGGTVEEV 780
YQGEKQRLSTASGPQGRVFPPQKLLPLEMQERKPTPYPPRKRSVDHTGSSQQEGGTVEEV
Sbjct: 721 YQGEKQRLSTASGPQGRVFPPQKLLPLEMQERKPTPYPPRKRSVDHTGSSQQEGGTVEEV 780
Query: 781 ATFSVALKGQEEESSNTLQK 800
ATFSVALKGQEEESSNTLQK
Sbjct: 781 ATFSVALKGQEEESSNTLQK 800
>gi|239756297 PREDICTED: hypothetical protein [Homo sapiens]
Length = 525
Score = 536 bits (1381), Expect = e-152
Identities = 285/355 (80%), Positives = 290/355 (81%), Gaps = 36/355 (10%)
Query: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA
Sbjct: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
Query: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGG DVQEGAELPAV
Sbjct: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGGDVQEGAELPAV 120
Query: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN
Sbjct: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
Query: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGP----------------------------- 211
GQETECQDDCFLGKSDLQNFEELREPAGTGP
Sbjct: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPTLPGGRESSEAYPLPQLGAIGSGQAVAYG 240
Query: 212 PFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRSGA 271
PFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPR+
Sbjct: 241 PFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPT 300
Query: 272 PRMFIVYHVAAGLPILPPAGHTLRLPPRSPP-RLGRAPHFNGPPAHPGP--GRPS 323
P + GLP G + + P LGRA +G P PGP G PS
Sbjct: 301 PG--LTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRA-SLSG-PFGPGPQGGPPS 351
Score = 282 bits (721), Expect = 1e-75
Identities = 140/155 (90%), Positives = 142/155 (91%), Gaps = 7/155 (4%)
Query: 387 RERAWPPPSL-------RTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG 439
R R+ PP L RTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG
Sbjct: 280 RIRSRSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG 339
Query: 440 PFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPG 499
PFGPGPQGGPPSRDRRHLGVQIGRVR PLGSALPYPARSELAPPGA+DALSPDPERPCPG
Sbjct: 340 PFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPG 399
Query: 500 TRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVR 534
TRGVRSGREGLLSPAPRSALGETAPTAQFTFRK R
Sbjct: 400 TRGVRSGREGLLSPAPRSALGETAPTAQFTFRKRR 434
>gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo
sapiens]
Length = 488
Score = 449 bits (1155), Expect = e-126
Identities = 279/469 (59%), Positives = 300/469 (63%), Gaps = 70/469 (14%)
Query: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA
Sbjct: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
Query: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV
Sbjct: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
Query: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN
Sbjct: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
Query: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPPFVLTQSSRPTDMLLNSLATSLSSRRMPS 240
GQETECQDDCFLGKSDLQNFEELREPAGTGP +L + L + + ++P
Sbjct: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGP------------LLGHLLELAKDALKLPD 228
Query: 241 SCPMTIFMRCRIRSRSPPL-LGSSLGCPRSGAPRMFIVYHVAAGLPILPPAGHTLRLPPR 299
+ + S PL L ++ G V GLP + A + RLPP
Sbjct: 229 D---------HLHALSNPLPLTTTAG--------------VVTGLPEVRGAPNVHRLPP- 264
Query: 300 SPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPR---GRQSLAEGVKRD 356
PP L R P G G G PS P E G P+ GR SL+ G
Sbjct: 265 -PPSL-RTP-TPGLTEGGGTGLPSKQRRGPSPK-----TELGGPQGSLGRASLS-GPFGP 315
Query: 357 GGQGLPDVEGAPDMGSSGEGAGLEEGS----PLRRERAWP------PPSLRTPTPGL--T 404
G QG P +G + GS P R E A P P P PG
Sbjct: 316 GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV 375
Query: 405 EGGGTGLPSKQRRGPSPKTELG--GPQGSLGRASLSGPFGPGPQGGPPS 451
G GL S P+P++ LG P + P PGP+GG S
Sbjct: 376 RSGREGLLS-----PAPRSALGETAPTAQFTFRKVRNP--PGPRGGAMS 417
Score = 429 bits (1104), Expect = e-120
Identities = 211/235 (89%), Positives = 214/235 (91%), Gaps = 17/235 (7%)
Query: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGP 419
GLP+V GAP++ R PPPSLRTPTPGLTEGGGTGLPSKQRRGP
Sbjct: 249 GLPEVRGAPNV-----------------HRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGP 291
Query: 420 SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE
Sbjct: 292 SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 351
Query: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP
Sbjct: 352 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 411
Query: 540 RGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSE 594
RGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSE
Sbjct: 412 RGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSE 466
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 72.0 bits (175), Expect = 2e-12
Identities = 91/305 (29%), Positives = 107/305 (35%), Gaps = 30/305 (9%)
Query: 283 GLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESG 341
G P LP G T P+ PP A G P G PG P + P P L G
Sbjct: 1272 GDPGLP--GRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPG 1329
Query: 342 TPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWP--PPSLRTP 399
P R E R G +G P GAP GEG GL P R+ P PP R P
Sbjct: 1330 LPGPRGDPGERGPR-GPKGEP---GAPGQVIGGEGPGL----PGRKGDPGPSGPPGPRGP 1381
Query: 400 TPGLTEGGGTGLPSKQRRGPSPKTELGGPQG------SLGRASLSG-PFGPGPQG--GPP 450
G GLP +G GP G + G L G P PGPQG GPP
Sbjct: 1382 LGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPP 1441
Query: 451 SRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGL 510
+ + G +P P E P G A+ P +R PG G +
Sbjct: 1442 GKKGEKGDSEDGAPGLPGQPGSP----GEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGER 1497
Query: 511 LSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDT 570
P P + G + + PPGP G G + PG GP
Sbjct: 1498 GPPGPAGSRGLPGVAGRPGAKGPEGPPGPTG----RQGEKGEPGRPGDPAVVGPAVAGPK 1553
Query: 571 PEKGD 575
EKGD
Sbjct: 1554 GEKGD 1558
Score = 63.5 bits (153), Expect = 7e-10
Identities = 94/294 (31%), Positives = 109/294 (37%), Gaps = 55/294 (18%)
Query: 323 STSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGE-GAGLEE 381
+T P P P + C + G P G L V G GLP GAP G G G+ +
Sbjct: 1239 TTQPRPEPCPVYCPKGQKGEP-GEMGLRGQVGPPGDPGLPGRTGAP--GPQGPPGSATAK 1295
Query: 382 GSPLRRERAWPPPSLRTPTPGLTEGGGT----------GLPSKQ----RRGP-SPKTELG 426
G ER +P R +PG GT GLP + RGP PK E G
Sbjct: 1296 G-----ERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPG 1350
Query: 427 GP--------QGSLGRASLSGPFGP----GPQGGPPSRDRRHL-GVQIGRVRVPLGS-AL 472
P G GR GP GP GP G P R L G + + G
Sbjct: 1351 APGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGP 1410
Query: 473 PYPARSELAP-----PGARDALSPDPERPC--PGTRGVR----SGREGLL-SPAPRSALG 520
P P +AP PG SP P+ P PG +G + G GL P G
Sbjct: 1411 PGPGEGGIAPGEPGLPGLPG--SPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQG 1468
Query: 521 ETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRG--PRPGWDTPE 572
P + R PGP G A G R PPGPA S G RPG PE
Sbjct: 1469 PRGPPGAIGPKGDRGFPGPLGEA-GEKGERGPPGPAGSRGLPGVAGRPGAKGPE 1521
Score = 60.5 bits (145), Expect = 6e-09
Identities = 119/437 (27%), Positives = 151/437 (34%), Gaps = 85/437 (19%)
Query: 288 PPAGHTLRLP--PRSPPRLGRAPHFNGPPAH-----------PGPGRPSTSPCPL-PPSL 333
PP L P P+ P L P GPP PGP PS P P L
Sbjct: 2187 PPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGL 2246
Query: 334 LCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDM----GSSGEGAGLEEGSPLRRER 389
E+G P G +DG +G P V G+P + G GE G+P +
Sbjct: 2247 PGQVGETGKP-GAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPG--PTGAPGQAVV 2303
Query: 390 AWPPPSLRTPTPGLTEGGGTGLP-SKQRRG-PSPKTELGGPQGSLGRASLSG-PFGPGPQ 446
P PG G G P +K RG P P+ G +G GRA G P G +
Sbjct: 2304 GLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPR----GEKGEAGRAGEPGDPGEDGQK 2359
Query: 447 GGP-PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDA---------LSPDPERP 496
G P P + GV + P G P + +L PG A P E
Sbjct: 2360 GAPGPKGFKGDPGVGVPGSPGPPG---PPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMG 2416
Query: 497 CPGTRGVRS-----GREGLLSP-APRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTR 550
PG G R GREG+ P P G P + + PG G G R
Sbjct: 2417 QPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGV--GLPGPRGER 2474
Query: 551 SPPGPAESARSRGPRPGWDTP-----------EKGDHLLSFTMQEDVGPLSFSSEDVCVV 599
PG R RPG + P E+G+ + DVG +
Sbjct: 2475 GEPG----IRGEDGRPGQEGPRGLTGPPGSRGERGE-------KGDVGSAGLKGD----- 2518
Query: 600 TEYLWEGNSDPKVGSSDPVIPGTKADKKTKMGPMSEEDKRERRSLGVNPRDCSSLDDSSP 659
+G+S +G P G K D + GP + + R +P D S +
Sbjct: 2519 -----KGDSAVILGPPGP--RGAKGDMGER-GPRGLDGDKGPRGDNGDPGDKGSKGEPGD 2570
Query: 660 SGSAVLYPGLAASWSPQ 676
GSA L PGL PQ
Sbjct: 2571 KGSAGL-PGLRGLLGPQ 2586
Score = 54.7 bits (130), Expect = 3e-07
Identities = 105/361 (29%), Positives = 127/361 (35%), Gaps = 72/361 (19%)
Query: 280 VAAGLPILP--PAGHTLRLPPRSPPRLG-RAPHFNGPPAHPG-PGRPSTSPCPLPPSLLC 335
+A G P LP P + P P + G + +G P PG PG P PP +
Sbjct: 1418 IAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIG 1477
Query: 336 LWVESGTPRGRQSLAEGVKRD-----GGQGLPDVEGAPDM-GSSGE----GAGLEEGSPL 385
+ G P E +R G +GLP V G P G G G E+G P
Sbjct: 1478 PKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPG 1537
Query: 386 RR-ERAWPPPSLRTPT-------PGLTEG-----GGTGLPSKQRRG-PSPKTELG--GPQ 429
R + A P++ P P G G G P G P PK + G GP
Sbjct: 1538 RPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPI 1597
Query: 430 GSLGRASLSGPFG----------PGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPA- 476
G GRA G G PGP G GP RD +G + G P LP A
Sbjct: 1598 GLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRD-GEVG-EKGDEGPPGDPGLPGKAG 1655
Query: 477 -RSELAPPGARDAL---------SPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTA 526
R PG R + D PG+ G + R P P L +T P A
Sbjct: 1656 ERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGA 1715
Query: 527 QFT----FRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKG 574
+ R P GP+G G G R PPGP RGP EKG
Sbjct: 1716 REKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGP-----AGEKG 1770
Query: 575 D 575
D
Sbjct: 1771 D 1771
Score = 54.7 bits (130), Expect = 3e-07
Identities = 85/306 (27%), Positives = 103/306 (33%), Gaps = 58/306 (18%)
Query: 301 PPRLGRAPHFNGPPAHPGPGRPSTSPCPL------PPSLLCLWVESGT-----PRGRQSL 349
PP L P GPP PGP P P PP L E G+ P+G + +
Sbjct: 2077 PPGLPGTP---GPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGV 2133
Query: 350 AEGVK----------RDGGQGLPDV------EGAPDM----GSSGEGAGLEEGSPLRRER 389
G+K +DG GLP EG P + G G G + P
Sbjct: 2134 P-GIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPG 2192
Query: 390 AWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG- 447
P + P+ E G TG P + GP+ L GP G G G G PG G
Sbjct: 2193 LAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGE 2252
Query: 448 ----GPPSRD-RRHLGVQIGRVRVPLGSALPYPA--RSELAPPGARDALSPDPERPCPGT 500
G P RD G VP LP P + E P GA P + G
Sbjct: 2253 TGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGA-------PGQAVVGL 2305
Query: 501 RGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESAR 560
G + G +G +GE R PGPRG A P P E +
Sbjct: 2306 PGAK-GEKGAPGGLAGDLVGEPGAKGD------RGLPGPRGEKGEAGRAGEPGDPGEDGQ 2358
Query: 561 SRGPRP 566
P P
Sbjct: 2359 KGAPGP 2364
Score = 52.4 bits (124), Expect = 2e-06
Identities = 85/303 (28%), Positives = 104/303 (34%), Gaps = 68/303 (22%)
Query: 299 RSPPRLGRAPHFNGPPAHPGPGRPSTSPC----PLPPSLLCLWVESGTP--RGRQSLAEG 352
R PP L +G P GP P+ + P L L E G P G L
Sbjct: 1772 RGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGK 1831
Query: 353 VKRDGGQGLPDVEGAP-DMGSSGE--------GAGLEEGSPLRRERAWP-------PPSL 396
DG GL G P D G G +G E + ER P PP L
Sbjct: 1832 PGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGL 1891
Query: 397 RTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQGGPPSRDR- 454
P G G G+P G PK + G GS G L G G G G P+ DR
Sbjct: 1892 PGPV-GPPGQGFPGVPG----GTGPKGDRG-ETGSKGEQGLPGERGLRGEPGSVPNVDRL 1945
Query: 455 -RHLGVQIGRVRVPL-------GSALPYPARSELAPPGARDALSPDPERPC--PGTRGVR 504
G++ +R + GS LP P R + + P E P PG RG++
Sbjct: 1946 LETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLK 2005
Query: 505 SGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGP 564
R PGP+G A G R PPGP+ A G
Sbjct: 2006 GDR---------------------------GDPGPQGPPGLALGERGPPGPSGLAGEPG- 2037
Query: 565 RPG 567
+PG
Sbjct: 2038 KPG 2040
Score = 50.1 bits (118), Expect = 8e-06
Identities = 82/289 (28%), Positives = 100/289 (34%), Gaps = 54/289 (18%)
Query: 307 APHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEG 366
AP G PG G P + P PP GVK G GLP + G
Sbjct: 2361 APGPKGFKGDPGVGVPGSPGPPGPP--------------------GVK--GDLGLPGLPG 2398
Query: 367 APDM----GSSGEGAGLEEGSPL-RRERAWPPPSLRTPTPGLTEG--GGTGLPS----KQ 415
AP + G +G + + P R A PP P P G G G P K
Sbjct: 2399 APGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKG 2458
Query: 416 RRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG-----GPP-SRDRRHLGVQIGRVRVPL 468
+G P L GP+G G + G G PG +G GPP SR R +G +
Sbjct: 2459 DKG-DPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKG 2517
Query: 469 GSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQF 528
+ L PPG R A ER G G + R P + + GE
Sbjct: 2518 DKG---DSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSA 2574
Query: 529 TFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 575
+R GP+G GA G PG RG EKGD
Sbjct: 2575 GLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIRG--------EKGD 2615
Score = 47.8 bits (112), Expect = 4e-05
Identities = 94/380 (24%), Positives = 132/380 (34%), Gaps = 55/380 (14%)
Query: 356 DGGQGLPDVEGAP-DMGSSGE-----GAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGT 409
DG +G G P D GS GE AGL L + P + PG G
Sbjct: 2547 DGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPG--SPGKD 2604
Query: 410 GLPS----KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRD--RRHLGVQIGR 463
G+P K G L G +G G L G G + GPP R H G ++G
Sbjct: 2605 GVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGHKG-EMGE 2663
Query: 464 VRVPLGSALPYPA--------RSELAPPGARDALSPDPERPCPGTRGV--RSGREGLLS- 512
VP S P R PG + ER PG G SG +G
Sbjct: 2664 PGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGP 2723
Query: 513 PAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTPE 572
P P ++G P + R PPG R + A G P P E P P E
Sbjct: 2724 PGPPGSVGPRGPEGLQGQKGERGPPGER--VVGAPGV--PGAPGERGEQGRPGPAGPRGE 2779
Query: 573 KG------DHLLSFTMQEDVGPLSFSSEDVCVVTEYLWEGNSDPKVGSSD---------P 617
KG D + F QE S+ +++ G+ ++D P
Sbjct: 2780 KGEAALTEDDIRGFVRQE-------MSQHCACQGQFIASGSRPLPSYAADTAGSQLHAVP 2832
Query: 618 VIPGTKADKKTKMGPMSEEDKRERRSLGVNPRDCSSLDDSSPSGSAVLYPGLAASWSPQ- 676
V+ + A+++ ++ P +E +D + DS S L G +++ +
Sbjct: 2833 VLRVSHAEEEERVPPEDDEYSEYSEYSVEEYQDPEAPWDSDDPCSLPLDEGSCTAYTLRW 2892
Query: 677 --QSGTGSQNCLHPIGLSCC 694
++ TGS HP C
Sbjct: 2893 YHRAVTGSTEACHPFVYGGC 2912
Score = 43.1 bits (100), Expect = 0.001
Identities = 68/249 (27%), Positives = 85/249 (34%), Gaps = 62/249 (24%)
Query: 352 GVKRDGG-QGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTG 410
G K D G QG P EG +G GE L+ +R P P PGL G
Sbjct: 1979 GPKGDSGEQGPPGKEGP--IGFPGERG-------LKGDRGDPGPQ---GPPGLALG---- 2022
Query: 411 LPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-------PGPQGGPPSRDRRHLGVQIGR 463
RGP + L G G G L G G PG +G + R + G
Sbjct: 2023 -----ERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGP 2077
Query: 464 VRVPLGSALPYP-------------ARSELAPPGARDA---------LSPDPERPCPGTR 501
+P P P E PPG + A P +R PG +
Sbjct: 2078 PGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIK 2137
Query: 502 GVRS-----GREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPA 556
G R G++G +P G P + + R PPGP GG G PPG
Sbjct: 2138 GDRGEPGPRGQDG--NPGLPGERGMAGPEGKPGLQGPRGPPGPVGG----HGDPGPPGAP 2191
Query: 557 ESARSRGPR 565
A GP+
Sbjct: 2192 GLAGPAGPQ 2200
Score = 41.6 bits (96), Expect = 0.003
Identities = 70/249 (28%), Positives = 89/249 (35%), Gaps = 47/249 (18%)
Query: 311 NGPPAHPGPGRPSTSPCPL-PPSLLCLWVESGTPRGRQSLAEGVKRDGG----QGLPDVE 365
NG P GP P P PP L V++G P R+ G + G +G P +
Sbjct: 1684 NGSPGSSGPKGDRGEPGPPGPPGRL---VDTG-PGAREKGEPGDRGQEGPRGPKGDPGLP 1739
Query: 366 GAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTEL 425
GAP G G + R P P PG+ G K RGP
Sbjct: 1740 GAP--GERG----------IEGFRGPPGPQ---GDPGVRGPAG----EKGDRGPPGLDGR 1780
Query: 426 GGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGA 485
G G G A SGP G + G P RD G + LP P+ PPG
Sbjct: 1781 SGLDGKPGAAGPSGPNGAAGKAGDPGRD--------GLPGLRGEQGLPGPS----GPPGL 1828
Query: 486 RDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMS 545
D + PG G ++G G P GE + + R+ R+ P GA
Sbjct: 1829 PGKPGEDGK---PGLNG-KNGEPG--DPGEDGRKGEKGDSGA-SGREGRDGPKGERGAPG 1881
Query: 546 AAGTRSPPG 554
G + PPG
Sbjct: 1882 ILGPQGPPG 1890
Score = 34.3 bits (77), Expect = 0.47
Identities = 67/233 (28%), Positives = 80/233 (34%), Gaps = 60/233 (25%)
Query: 339 ESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSG----EGAGLEEGSPLRRERAWPPP 394
E+G P GR LA G G+P GAP G G +G +G P
Sbjct: 2645 EAGPP-GRPGLAGHKGEMGEPGVPGQSGAP--GKEGLIGPKGDRGFDGQP---------- 2691
Query: 395 SLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDR 454
P E G G P +GG G G +GP PGP G R
Sbjct: 2692 ---GPKGDQGEKGERGTPG-----------IGGFPGPSGNDGSAGP--PGPPGSVGPRGP 2735
Query: 455 RHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPA 514
L Q G E PPG R +P PG G R G +G PA
Sbjct: 2736 EGLQGQKG----------------ERGPPGERVVGAPG----VPGAPGER-GEQGRPGPA 2774
Query: 515 -PRSALGETAPTAQFTFRKVRNPPGPR---GGAMSAAGTRSPPGPAESARSRG 563
PR GE A T VR G A+G+R P P+ +A + G
Sbjct: 2775 GPRGEKGEAALTEDDIRGFVRQEMSQHCACQGQFIASGSR--PLPSYAADTAG 2825
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 71.2 bits (173), Expect = 3e-12
Identities = 88/309 (28%), Positives = 112/309 (36%), Gaps = 44/309 (14%)
Query: 285 PILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPG-PGRPSTSPC-----PLPPSLLCLWV 338
P+ P L PP +P G F GPP PG PG ++ P P PP
Sbjct: 180 PMGPSGPRGLPGPPGAPGPQG----FQGPPGEPGEPG--ASGPMGPRGPPGPPGKNGDDG 233
Query: 339 ESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRT 398
E+G P GR G +GLP G P M +GL+ G+ A P +
Sbjct: 234 EAGKP-GRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLD-GAKGDAGPAGPKGEPGS 291
Query: 399 PTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRH 456
P G G GLP ++ R +P G +G+ G +GP GP GPP
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGP--AGARGNDGATGAAGPPGPTGPAGPPGFPGAV 349
Query: 457 LGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVR--SGREGLL-SP 513
+ P GS P R E PPG A P G G + +G G+ +P
Sbjct: 350 GAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP 409
Query: 514 APRSALGETAPTAQFTFRKVRNPPGPRG-----------------GAMSAAGTRSPPGPA 556
A G + P PPGP+G G G + PPGPA
Sbjct: 410 GFPGARGPSGPQGP------GGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463
Query: 557 ESARSRGPR 565
RG R
Sbjct: 464 GEEGKRGAR 472
Score = 66.2 bits (160), Expect = 1e-10
Identities = 86/265 (32%), Positives = 100/265 (37%), Gaps = 38/265 (14%)
Query: 302 PRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGL 361
P + AP F G GP P P P S E G P + G K G G
Sbjct: 403 PGIAGAPGFPGARGPSGPQGPGGPPGPKGNS-----GEPGAPGSKGDT--GAK--GEPGP 453
Query: 362 PDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP 421
V+G P G EEG R R P P+ PG E GG G RG
Sbjct: 454 VGVQGPP-------GPAGEEGK--RGARGEPGPTGLPGPPG--ERGGPG-----SRGFPG 497
Query: 422 KTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELA 481
+ GP+G G GP GP+G P R G + P P +
Sbjct: 498 ADGVAGPKGPAGERGSPGP--AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGP-DGKTG 554
Query: 482 PPG-ARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR 540
PPG A P P P PG RG ++G G P P+ A GE + R V PPG
Sbjct: 555 PPGPAGQDGRPGPPGP-PGARG-QAGVMGF--PGPKGAAGEPGKAGE---RGVPGPPGAV 607
Query: 541 G--GAMSAAGTRSPPGPAESARSRG 563
G G AG + PPGPA A RG
Sbjct: 608 GPAGKDGEAGAQGPPGPAGPAGERG 632
Score = 65.1 bits (157), Expect = 2e-10
Identities = 100/327 (30%), Positives = 112/327 (34%), Gaps = 71/327 (21%)
Query: 282 AGLPILP-PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVES 340
AG P P PAG PR P GPP PGP SP P+
Sbjct: 892 AGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPA-----GAP 946
Query: 341 GTPRGRQSLA--EGVKRDGGQ-------GLPDVEGAPDMGSSG-EGAGLEEGSPLRRERA 390
GTP G Q +A GV GQ GLP G P G G GA E G P
Sbjct: 947 GTP-GPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEP--GKQGPSGASGERGPP----GP 999
Query: 391 WPPPSLRTPTPGLTEGGGTGLPSKQ----------RRGPSPKTELGGPQGSLGRASLSGP 440
PP L P PG E G G P + +G +T GP G+ G GP
Sbjct: 1000 MGPPGLAGP-PG--ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGP 1056
Query: 441 FGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGT 500
GP + G DR G P G P AR P G R E+ G
Sbjct: 1057 VGPAGKSG----DRGETGPA-----GPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGI 1107
Query: 501 RGVR--SGREGLLSPAPRSALGETAPTAQFTFRKVRNPPG-------------------- 538
+G R SG +G P P + GE P+ R PPG
Sbjct: 1108 KGHRGFSGLQG--PPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPP 1165
Query: 539 -PRGGAMSAAGTRSPPGPAESARSRGP 564
PRG AG PPGP GP
Sbjct: 1166 GPRG-RTGDAGPVGPPGPPGPPGPPGP 1191
Score = 63.9 bits (154), Expect = 6e-10
Identities = 97/310 (31%), Positives = 116/310 (37%), Gaps = 40/310 (12%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRD 356
P+ P +P GP PG GRP + P L G P G+ +D
Sbjct: 504 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPG-PDGKTGPPGPAGQD 562
Query: 357 GGQGLPDVEGAPD----MGSSG-EGAGLEEGSPLRRERAWP-PPSLRTPTPGLTEGGGTG 410
G G P GA MG G +GA E G ER P PP P E G G
Sbjct: 563 GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA--GERGVPGPPGAVGPAGKDGEAGAQG 620
Query: 411 LPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-------PGPQGGP-------PSRDRRH 456
P GP+ + GP GS G L GP G PG QG P PS R
Sbjct: 621 PPGPA--GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGE 678
Query: 457 LGVQIGR-VRVPLGSALPYPARSELAPPGAR-DALSPDP--ERPCPGTRGVRSGREGLLS 512
G R V+ P G A P A GA+ DA +P + PG +G+ R
Sbjct: 679 RGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGL 738
Query: 513 PAPRSALGETAP------TAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP 564
P P+ G+ P + R + P GP G GA G P GPA +RG
Sbjct: 739 PGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARG- 797
Query: 565 RPGWDTPEKG 574
PG D E G
Sbjct: 798 APG-DRGEPG 806
Score = 63.5 bits (153), Expect = 7e-10
Identities = 95/335 (28%), Positives = 108/335 (32%), Gaps = 59/335 (17%)
Query: 283 GLPILP--PAGHTLRLPPRSPPRLGRAPHFN--GPPAHPG----------PGRPSTSPCP 328
GLP P P + PP P G + GPP PG PGRP P
Sbjct: 188 GLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPP 247
Query: 329 LPPSLLCLWVESGTP-----RGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGS 383
P L +G P RG L +G K D G P +G P GS GE +
Sbjct: 248 GPQGARGLPGTAGLPGMKGHRGFSGL-DGAKGDAGPAGP--KGEP--GSPGENGAPGQMG 302
Query: 384 P--LRRERAWP----PPSLR--------TPTPGLT-EGGGTGLP----SKQRRGPSPKTE 424
P L ER P P R PG T G G P +K GP
Sbjct: 303 PRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRG 362
Query: 425 LGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYP-ARSELAPP 483
GPQG G GP G G P D + G + + A +P AR P
Sbjct: 363 SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP-GAKGANGAPGIAGAPGFPGARGPSGPQ 421
Query: 484 GARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-- 541
G P PG G + P P G P + R R PGP G
Sbjct: 422 GPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLP 481
Query: 542 ------------GAMSAAGTRSPPGPAESARSRGP 564
G A G P GPA S GP
Sbjct: 482 GPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGP 516
Score = 61.2 bits (147), Expect = 4e-09
Identities = 89/288 (30%), Positives = 102/288 (35%), Gaps = 56/288 (19%)
Query: 298 PRSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRD 356
PR P P +G P PG PG P P PP L G + S K
Sbjct: 119 PRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGL------GGNFAPQLSYGYDEKST 172
Query: 357 GGQGLPDVEGAPDMGSSG-EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQ 415
GG +P MG SG G G+P + PP PG E G +G P
Sbjct: 173 GGISVPG-----PMGPSGPRGLPGPPGAPGPQGFQGPPGE-----PG--EPGASG-PMGP 219
Query: 416 RRGPSPKTELG--GPQGSLGRASLSGPFGPGPQG--------GPPSRDRRHLGVQIGRVR 465
R P P + G G G GR GP PGPQG G P + H G +
Sbjct: 220 RGPPGPPGKNGDDGEAGKPGRPGERGP--PGPQGARGLPGTAGLPGM-KGHRG--FSGLD 274
Query: 466 VPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPT 525
G A P + E PG A R PG RG R G +P P A G T
Sbjct: 275 GAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERG-RPG-----APGPAGARGNDGAT 328
Query: 526 AQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARSRGPR 565
PPGP G GA+ A G P GP S +G R
Sbjct: 329 G------AAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVR 370
Score = 61.2 bits (147), Expect = 4e-09
Identities = 88/295 (29%), Positives = 103/295 (34%), Gaps = 59/295 (20%)
Query: 298 PRSPPRLGRAPHFNGPPAH---PGP-------GRPSTSPCPLPPSLLCLWVESGTPRGRQ 347
P PP P G P PGP G P PP PRG
Sbjct: 648 PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPG-------PAGPRGAN 700
Query: 348 SLA--EGVKRDGGQ-GLPDVEGAPDM-GSSGE--GAGLE-------EGSPLRRERAWPPP 394
+G K D G G P +GAP + G GE AGL + P + +
Sbjct: 701 GAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD 760
Query: 395 SLRTPTPGLTEGGGTGLPS-KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRD 453
+R T + G G P K GPS G +G+ G GP GP GPP D
Sbjct: 761 GVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGAD 820
Query: 454 RRHLGVQIGRVRVPLGSALPYPARSELAPPG-ARDALSPDP--ERPCPGTRGVRSGREGL 510
Q G P G A A+ + PPG A A P P PG +G R
Sbjct: 821 G-----QPGAKGEP-GDA---GAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARG----- 866
Query: 511 LSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPR 565
S P A G + PPGP G AG PPGPA +GPR
Sbjct: 867 -SAGPPGATGFPGAAGRV------GPPGPSGN----AGPPGPPGPAGKEGGKGPR 910
Score = 59.7 bits (143), Expect = 1e-08
Identities = 87/292 (29%), Positives = 98/292 (33%), Gaps = 58/292 (19%)
Query: 301 PPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGT-PRGRQSLAEGVKRDGGQ 359
PP P G PGP + P P P+ E G PRG G
Sbjct: 870 PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA----GKEGGKGPRGET---------GPA 916
Query: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEG--GGTGLPSKQ-R 416
G P G P G E+GSP A P TP P G G GLP ++
Sbjct: 917 GRPGEVGPP----GPPGPAGEKGSPGADGPAGAPG---TPGPQGIAGQRGVVGLPGQRGE 969
Query: 417 RG----PSPKTELG--GPQGSLGRASLSGPFGPGPQGGPPSRDRRH----LGVQIGRVRV 466
RG P P E G GP G+ G GP GP GPP R GR
Sbjct: 970 RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGS 1029
Query: 467 PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTA 526
P G+ PPGA A P P P +SG G PA G P
Sbjct: 1030 P-GAKGDRGETGPAGPPGAPGA----PGAPGPVGPAGKSGDRGETGPA-----GPAGPVG 1079
Query: 527 QFTFRKVRNPPGPRG--------------GAMSAAGTRSPPGPAESARSRGP 564
R P GPRG G +G + PPGP S +GP
Sbjct: 1080 PVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131
Score = 40.0 bits (92), Expect = 0.009
Identities = 60/242 (24%), Positives = 77/242 (31%), Gaps = 39/242 (16%)
Query: 283 GLPILP-PAGHTLRLPP------RSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLL 334
G P LP P+G + P R PP P GPP G G P P
Sbjct: 971 GFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSP------ 1024
Query: 335 CLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPD-MGSSGEGAGLEEGSPLRRERAWPP 393
G+P + E G G P GAP +G +G+ E P P
Sbjct: 1025 ---GRDGSPGAKGDRGE-TGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGP 1080
Query: 394 PSLRTPTPGLTEGGGTGLPSKQR-------------RGPSPKTELGGPQGSLGRASLSGP 440
R P G G +Q +GP G QG G + +GP
Sbjct: 1081 VGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGP 1140
Query: 441 FGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGT 500
GP G P +D + + P+G P + P G P P P P +
Sbjct: 1141 RGPPGSAGAPGKD------GLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP-PGPPGPPS 1193
Query: 501 RG 502
G
Sbjct: 1194 AG 1195
Score = 38.1 bits (87), Expect = 0.033
Identities = 43/150 (28%), Positives = 49/150 (32%), Gaps = 24/150 (16%)
Query: 418 GPSPKTELGGPQGSLGRASLSG----PFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALP 473
GP T GP+G G G P PGP G P LG G L
Sbjct: 112 GPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLG---GNFAPQLSYGYD 168
Query: 474 YPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKV 533
+ ++ PG + P R PG G G +G P GE
Sbjct: 169 EKSTGGISVPG---PMGPSGPRGLPGPPGA-PGPQGFQGPP-----GEPGEPGASGPMGP 219
Query: 534 RNPPGPRG--------GAMSAAGTRSPPGP 555
R PPGP G G G R PPGP
Sbjct: 220 RGPPGPPGKNGDDGEAGKPGRPGERGPPGP 249
Score = 37.4 bits (85), Expect = 0.055
Identities = 45/145 (31%), Positives = 54/145 (37%), Gaps = 39/145 (26%)
Query: 423 TELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 482
T + GP+G +GP GP GPP RD G+ G+ +P P P P
Sbjct: 108 TGVEGPKGD------TGPRGPRGPAGPPGRD----GIP-GQPGLPGPPGPPGPP----GP 152
Query: 483 PGARDALSPDPER----------PCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRK 532
PG +P PG G SG GL P P A G +
Sbjct: 153 PGLGGNFAPQLSYGYDEKSTGGISVPGPMG-PSGPRGL--PGPPGAPGP---------QG 200
Query: 533 VRNPPGPRG--GAMSAAGTRSPPGP 555
+ PPG G GA G R PPGP
Sbjct: 201 FQGPPGEPGEPGASGPMGPRGPPGP 225
Score = 30.0 bits (66), Expect = 8.9
Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 492 DPERPCPGTRGVRSGR------EGLLSPAPRSALGETAPTAQFTFRKVRNPPGP--RGGA 543
D + CPG V G +G SP + G P R R P GP R G
Sbjct: 76 DETKNCPGAE-VPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGI 134
Query: 544 MSAAGTRSPPGP 555
G PPGP
Sbjct: 135 PGQPGLPGPPGP 146
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 69.7 bits (169), Expect = 1e-11
Identities = 93/339 (27%), Positives = 124/339 (36%), Gaps = 46/339 (13%)
Query: 257 PPLLGSSLGCPRSGAPRMFIVYHVAAGLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAH 316
PP LG + +G A G + G + PR PP AP G +
Sbjct: 172 PPGLGGNFAAQMAGG-----FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGN 226
Query: 317 PG-PGRPSTSPC------PLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPD 369
PG PG P S P PP E+G P G+ G +G P G P
Sbjct: 227 PGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKP-GKAGERGPPGPQGARGFPGTPGLPG 285
Query: 370 M-GSSG----EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTE 424
+ G G +GA E G+P + + P +P P G GLP + RG +
Sbjct: 286 VKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPM----GPRGLPGE--RGRTGPAG 339
Query: 425 LGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP 483
G +G+ G+ +GP GP GP GGP + G P G+ P A+ P
Sbjct: 340 AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG----PTGARGPEGAQGPRGEP 395
Query: 484 GARDALSPDPERPCPGTRGV-----RSGREGLLS----------PAPRSALGETAPTAQF 528
G + P PGT G+ +G G+ P P+ A G P Q
Sbjct: 396 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQT 455
Query: 529 TFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 565
+ G +G G AG + PGPA RG R
Sbjct: 456 GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 494
Score = 60.1 bits (144), Expect = 8e-09
Identities = 87/306 (28%), Positives = 103/306 (33%), Gaps = 68/306 (22%)
Query: 301 PPRLGRAPHFNGPPAHPG----PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRD 356
PP P GP PG PG S PP P+G V
Sbjct: 937 PPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPG----------PQGLAGQRGIVGLP 986
Query: 357 GGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT----EGGGTGLP 412
G +G G P G SGE ++G+P PP + P GLT E G G P
Sbjct: 987 GQRGERGFPGLP--GPSGEPG--KQGAPGASGDRGPPGPVGPP--GLTGPAGEPGREGSP 1040
Query: 413 SKQRRGPSPKTELGGPQGSLGRASLSG-PFGPGPQGGP-------PSRDRRHLGVQIGRV 464
GP + G +G G G P PGP G P DR G Q
Sbjct: 1041 GAD--GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ---- 1094
Query: 465 RVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVR-----------------SGR 507
P+G + P AR P G R E PG RG++ SG
Sbjct: 1095 -GPMGPSGPAGARGIQGPQGPRGDKGEAGE---PGERGLKGHRGFTGLQGLPGPPGPSGD 1150
Query: 508 EGLLSPA----PRSALGETAPTAQFTFRKVRNP---PGPRG--GAMSAAGTRSPPGPAES 558
+G PA PR G P+ + + P PGPRG G AG PGP
Sbjct: 1151 QGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGP 1210
Query: 559 ARSRGP 564
GP
Sbjct: 1211 PGPPGP 1216
Score = 59.7 bits (143), Expect = 1e-08
Identities = 86/309 (27%), Positives = 105/309 (33%), Gaps = 56/309 (18%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTP--------RG 345
PR PP GPP PG G+P + PP GTP RG
Sbjct: 241 PRGPP---------GPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 291
Query: 346 RQSLAEGVKRDGGQGLPDVEGAPDMGSSGE----GAGLEEGSPLRRERAWPP-------- 393
L +G K G G P V+G + GS GE G G P R R P
Sbjct: 292 YPGL-DGAK--GEAGAPGVKG--ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGN 346
Query: 394 ---PSLRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGGPQGSLG-RASLSGPFGPGPQGG 448
P P + GG G P +G + T GP+G+ G R P PGP G
Sbjct: 347 DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGA 406
Query: 449 PPSRDRRHLGVQIGRVRVP-LGSALPYPA-RSELAPPGARDALSPDPERPCPGTRGVRSG 506
+ + G P + A +P R P GA L P + PG G +
Sbjct: 407 SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGE 466
Query: 507 REGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPP------GP 555
+ P P G P + R R PG G G A G R P GP
Sbjct: 467 QGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGP 526
Query: 556 AESARSRGP 564
+ RGP
Sbjct: 527 KGAPGERGP 535
Score = 59.3 bits (142), Expect = 1e-08
Identities = 86/292 (29%), Positives = 101/292 (34%), Gaps = 63/292 (21%)
Query: 299 RSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDG 357
R P L NG P PG PG P P P+G+ + DG
Sbjct: 533 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPG-------DAGPQGKVGPSGAPGEDG 585
Query: 358 GQGLPDVEGAPD----MGSSG-EGAGLEEGSPLRRERAWP-PPSLRTPTPGLTEGGGTGL 411
G P +GA MG G +GA E G E+ P P LR E G G
Sbjct: 586 RPGPPGPQGARGQPGVMGFPGPKGANGEPGKA--GEKGLPGAPGLRGLPGKDGETGAAGP 643
Query: 412 PSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSA 471
P GP+ + G G G L GP GP +GG P G VP G A
Sbjct: 644 PGPA--GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP-----------GDQGVP-GEA 689
Query: 472 LPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSP----------APRSALGE 521
GA + P ER PG RG G +GL P P+ A G
Sbjct: 690 ------------GAPGLVGPRGERGFPGERG-SPGAQGLQGPRGLPGTPGTDGPKGASGP 736
Query: 522 TAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR--PGWD 569
P + PPG +G G AAG P G +GP PG D
Sbjct: 737 AGPPG------AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD 782
Score = 56.6 bits (135), Expect = 9e-08
Identities = 80/266 (30%), Positives = 101/266 (37%), Gaps = 40/266 (15%)
Query: 302 PRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGL 361
P + AP F GP PGP + +T P P+G Q+ G+ G+
Sbjct: 425 PGIAGAPGFPGPRGPPGP-QGATGPLG--------------PKG-QTGEPGIAGFKGEQG 468
Query: 362 PDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP 421
P E P G EEG R R P PG E G G RG
Sbjct: 469 PKGEPGPAGPQGAPGPAGEEGK--RGARGEPGGVGPIGPPG--ERGAPG-----NRGFPG 519
Query: 422 KTELGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL 480
+ L GP+G+ G SG GP G G P L G P G A P + ++
Sbjct: 520 QDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP-GDAGP---QGKV 575
Query: 481 APPGARDALSPDPERPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGP 539
P GA D PG +G R G+ G++ P P+ A GE + + + PG
Sbjct: 576 GPSGAP---GEDGRPGPPGPQGAR-GQPGVMGFPGPKGANGEPGKAGE---KGLPGAPGL 628
Query: 540 RG--GAMSAAGTRSPPGPAESARSRG 563
RG G G PPGPA A RG
Sbjct: 629 RGLPGKDGETGAAGPPGPAGPAGERG 654
Score = 55.5 bits (132), Expect = 2e-07
Identities = 81/271 (29%), Positives = 95/271 (35%), Gaps = 62/271 (22%)
Query: 312 GPPAHPG----PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGA 367
G P PG PG+ + PP P G + G QGLP G
Sbjct: 621 GLPGAPGLRGLPGKDGETGAAGPPG-------PAGPAGERGEQGAPGPSGFQGLPGPPGP 673
Query: 368 PDMGSSGEGAGL--EEGSP----LRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP 421
P G G+ E G+P R ER +P GL G GLP +P
Sbjct: 674 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQ--GPRGLPG------TP 725
Query: 422 KTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ-IGRVRVPLGSALPYPARSEL 480
T+ GP+G+ SGP GP GPP G+Q + R G A P R ++
Sbjct: 726 GTD--GPKGA------SGPAGPPGAQGPP-------GLQGMPGERGAAGIAGPKGDRGDV 770
Query: 481 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR 540
G A D R G G P P A GE PPGP
Sbjct: 771 GEKGPEGAPGKDGGRGLTGPIG---------PPGPAGANGEKGEVG---------PPGPA 812
Query: 541 G--GAMSAAGTRSPPGPAESARSRGPRPGWD 569
G GA A G R GP A GP PG D
Sbjct: 813 GSAGARGAPGERGETGPPGPAGFAGP-PGAD 842
Score = 53.1 bits (126), Expect = 1e-06
Identities = 85/297 (28%), Positives = 105/297 (35%), Gaps = 63/297 (21%)
Query: 299 RSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTP--RGRQSLAEGVKRD 356
+ P L P +GP GP P + P P L G P RG +A G K D
Sbjct: 716 QGPRGLPGTPGTDGPKGASGPAGPPGAQGP--PGL------QGMPGERGAAGIA-GPKGD 766
Query: 357 GGQ-GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQ 415
G G EGAP G G G GL P+ PP P E G G P
Sbjct: 767 RGDVGEKGPEGAP--GKDG-GRGLT--GPIG------PPG---PAGANGEKGEVGPP--- 809
Query: 416 RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRD-------RRHLGVQIGRV---- 464
GP+ G +G+ G +GP GP GPP D + Q G
Sbjct: 810 --GPAGSA---GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 864
Query: 465 -RVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRG-----VRSGREGLLSP----- 513
+ P G+ P P GAR A P PG G +G G P
Sbjct: 865 PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG 924
Query: 514 --APRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRG 563
P+ A G++ P + ++ P GP G G +G PPGP A RG
Sbjct: 925 KDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 981
Score = 51.6 bits (122), Expect = 3e-06
Identities = 78/277 (28%), Positives = 93/277 (33%), Gaps = 69/277 (24%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
G PGP PS +P P P+ + P+G + G QG P G P G
Sbjct: 858 GDAGAPGPQGPSGAPGPQGPTGVT------GPKGAR---------GAQGPPGATGFP--G 900
Query: 372 SSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGS 431
++G R PP S P P G K RG S GP G
Sbjct: 901 AAG--------------RVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS------GPPGR 940
Query: 432 LGRASLSGPFGP----------GPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
G L GP GP GP G GPP + L Q G V +P R E
Sbjct: 941 AGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPG--PQGLAGQRGIVGLP-------GQRGE 991
Query: 480 LAPPGARDALSPDPERPCPGTRGVRS-----GREGLLSPA----PRSALGETAPTAQFTF 530
PG ++ PG G R G GL PA + G P +
Sbjct: 992 RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGA 1051
Query: 531 RKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 565
V+ G G GA A G PGPA +G R
Sbjct: 1052 AGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR 1088
Score = 49.3 bits (116), Expect = 1e-05
Identities = 75/282 (26%), Positives = 90/282 (31%), Gaps = 61/282 (21%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
G P +PGP P P PP L GG + G D
Sbjct: 156 GTPGNPGP--PGPPGPPGPPGL-----------------------GGNFAAQMAGGFDEK 190
Query: 372 SSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGG-------GTGLPSKQRRGPSPKTE 424
+ G G+ +G PP P P +G G P R P P +
Sbjct: 191 AGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGK 250
Query: 425 LG--GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP-----LGSALPYPAR 477
G G G G+A GP PGPQG L G P G A +
Sbjct: 251 PGDDGEAGKPGKAGERGP--PGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK 308
Query: 478 SELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPP 537
E PG + P R PG RG R+G G + R G+ P PP
Sbjct: 309 GESGSPGENGSPGPMGPRGLPGERG-RTGPAG--AAGARGNDGQPGPA---------GPP 356
Query: 538 GPRG--------GAMSAAGTRSPPGPAESARSRGPRPGWDTP 571
GP G GA A G P G ++GPR TP
Sbjct: 357 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP 398
Score = 48.1 bits (113), Expect = 3e-05
Identities = 85/295 (28%), Positives = 95/295 (32%), Gaps = 90/295 (30%)
Query: 308 PHFNGPPAHPGP-GRPSTS-----PCPL-PPSLLCLWVESGT--------PRGRQSLAEG 352
P GP PG G P S P P+ PP L E G P GR A G
Sbjct: 995 PGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAA-G 1053
Query: 353 VKRDGGQ-------GLPDVEGAP----------DMGSSGEGAGLEEGSPLRRERAWPPPS 395
VK D G+ G P G+P D G +G + P P
Sbjct: 1054 VKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG 1113
Query: 396 LRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRR 455
R E G GL K RG + L GP G G SGP GP GPP
Sbjct: 1114 PRGDKGEAGEPGERGL--KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPG---- 1167
Query: 456 HLGVQIGRVRVPLGSALPYPARSELAPPGARDALS--PDPERPCPGTRGVRSGREGLLSP 513
P+G P +D + P P P PG RG RSG G
Sbjct: 1168 -----------PVG-------------PSGKDGANGIPGPIGP-PGPRG-RSGETG---- 1197
Query: 514 APRSALGETAPTAQFTFRKVRNPPGPRGGA--MSAAGTRSPPGPAESARSRGPRP 566
P G P PPGP G MSA P R +GP P
Sbjct: 1198 -PAGPPGNPGPP---------GPPGPPGPGIDMSAFAGLGP-------REKGPDP 1235
Score = 33.1 bits (74), Expect = 1.0
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 514 APRSALGETAPTAQFTFRKVRNPPGPR------GGAMSAAGTRSPPGPAESARSRGPRPG 567
+P GE P PGP+ G G + PPGP A +GPR
Sbjct: 77 SPEIPFGECCPICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPR-- 134
Query: 568 WDTPEKGD 575
D +KG+
Sbjct: 135 GDRGDKGE 142
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 69.7 bits (169), Expect = 1e-11
Identities = 93/339 (27%), Positives = 124/339 (36%), Gaps = 46/339 (13%)
Query: 257 PPLLGSSLGCPRSGAPRMFIVYHVAAGLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAH 316
PP LG + +G A G + G + PR PP AP G +
Sbjct: 103 PPGLGGNFAAQMAGG-----FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGN 157
Query: 317 PG-PGRPSTSPC------PLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPD 369
PG PG P S P PP E+G P G+ G +G P G P
Sbjct: 158 PGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKP-GKAGERGPPGPQGARGFPGTPGLPG 216
Query: 370 M-GSSG----EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTE 424
+ G G +GA E G+P + + P +P P G GLP + RG +
Sbjct: 217 VKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPM----GPRGLPGE--RGRTGPAG 270
Query: 425 LGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP 483
G +G+ G+ +GP GP GP GGP + G P G+ P A+ P
Sbjct: 271 AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG----PTGARGPEGAQGPRGEP 326
Query: 484 GARDALSPDPERPCPGTRGV-----RSGREGLLS----------PAPRSALGETAPTAQF 528
G + P PGT G+ +G G+ P P+ A G P Q
Sbjct: 327 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQT 386
Query: 529 TFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 565
+ G +G G AG + PGPA RG R
Sbjct: 387 GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 425
Score = 60.1 bits (144), Expect = 8e-09
Identities = 87/306 (28%), Positives = 103/306 (33%), Gaps = 68/306 (22%)
Query: 301 PPRLGRAPHFNGPPAHPG----PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRD 356
PP P GP PG PG S PP P+G V
Sbjct: 868 PPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPG----------PQGLAGQRGIVGLP 917
Query: 357 GGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT----EGGGTGLP 412
G +G G P G SGE ++G+P PP + P GLT E G G P
Sbjct: 918 GQRGERGFPGLP--GPSGEPG--KQGAPGASGDRGPPGPVGPP--GLTGPAGEPGREGSP 971
Query: 413 SKQRRGPSPKTELGGPQGSLGRASLSG-PFGPGPQGGP-------PSRDRRHLGVQIGRV 464
GP + G +G G G P PGP G P DR G Q
Sbjct: 972 GAD--GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ---- 1025
Query: 465 RVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVR-----------------SGR 507
P+G + P AR P G R E PG RG++ SG
Sbjct: 1026 -GPMGPSGPAGARGIQGPQGPRGDKGEAGE---PGERGLKGHRGFTGLQGLPGPPGPSGD 1081
Query: 508 EGLLSPA----PRSALGETAPTAQFTFRKVRNP---PGPRG--GAMSAAGTRSPPGPAES 558
+G PA PR G P+ + + P PGPRG G AG PGP
Sbjct: 1082 QGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGP 1141
Query: 559 ARSRGP 564
GP
Sbjct: 1142 PGPPGP 1147
Score = 59.7 bits (143), Expect = 1e-08
Identities = 86/309 (27%), Positives = 105/309 (33%), Gaps = 56/309 (18%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTP--------RG 345
PR PP GPP PG G+P + PP GTP RG
Sbjct: 172 PRGPP---------GPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 222
Query: 346 RQSLAEGVKRDGGQGLPDVEGAPDMGSSGE----GAGLEEGSPLRRERAWPP-------- 393
L +G K G G P V+G + GS GE G G P R R P
Sbjct: 223 YPGL-DGAK--GEAGAPGVKG--ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGN 277
Query: 394 ---PSLRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGGPQGSLG-RASLSGPFGPGPQGG 448
P P + GG G P +G + T GP+G+ G R P PGP G
Sbjct: 278 DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGA 337
Query: 449 PPSRDRRHLGVQIGRVRVP-LGSALPYPA-RSELAPPGARDALSPDPERPCPGTRGVRSG 506
+ + G P + A +P R P GA L P + PG G +
Sbjct: 338 SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGE 397
Query: 507 REGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPP------GP 555
+ P P G P + R R PG G G A G R P GP
Sbjct: 398 QGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGP 457
Query: 556 AESARSRGP 564
+ RGP
Sbjct: 458 KGAPGERGP 466
Score = 59.3 bits (142), Expect = 1e-08
Identities = 86/292 (29%), Positives = 101/292 (34%), Gaps = 63/292 (21%)
Query: 299 RSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDG 357
R P L NG P PG PG P P P+G+ + DG
Sbjct: 464 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPG-------DAGPQGKVGPSGAPGEDG 516
Query: 358 GQGLPDVEGAPD----MGSSG-EGAGLEEGSPLRRERAWP-PPSLRTPTPGLTEGGGTGL 411
G P +GA MG G +GA E G E+ P P LR E G G
Sbjct: 517 RPGPPGPQGARGQPGVMGFPGPKGANGEPGKA--GEKGLPGAPGLRGLPGKDGETGAAGP 574
Query: 412 PSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSA 471
P GP+ + G G G L GP GP +GG P G VP G A
Sbjct: 575 PGPA--GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP-----------GDQGVP-GEA 620
Query: 472 LPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSP----------APRSALGE 521
GA + P ER PG RG G +GL P P+ A G
Sbjct: 621 ------------GAPGLVGPRGERGFPGERG-SPGAQGLQGPRGLPGTPGTDGPKGASGP 667
Query: 522 TAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR--PGWD 569
P + PPG +G G AAG P G +GP PG D
Sbjct: 668 AGPPG------AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD 713
Score = 56.6 bits (135), Expect = 9e-08
Identities = 80/266 (30%), Positives = 101/266 (37%), Gaps = 40/266 (15%)
Query: 302 PRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGL 361
P + AP F GP PGP + +T P P+G Q+ G+ G+
Sbjct: 356 PGIAGAPGFPGPRGPPGP-QGATGPLG--------------PKG-QTGEPGIAGFKGEQG 399
Query: 362 PDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP 421
P E P G EEG R R P PG E G G RG
Sbjct: 400 PKGEPGPAGPQGAPGPAGEEGK--RGARGEPGGVGPIGPPG--ERGAPG-----NRGFPG 450
Query: 422 KTELGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL 480
+ L GP+G+ G SG GP G G P L G P G A P + ++
Sbjct: 451 QDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP-GDAGP---QGKV 506
Query: 481 APPGARDALSPDPERPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGP 539
P GA D PG +G R G+ G++ P P+ A GE + + + PG
Sbjct: 507 GPSGAP---GEDGRPGPPGPQGAR-GQPGVMGFPGPKGANGEPGKAGE---KGLPGAPGL 559
Query: 540 RG--GAMSAAGTRSPPGPAESARSRG 563
RG G G PPGPA A RG
Sbjct: 560 RGLPGKDGETGAAGPPGPAGPAGERG 585
Score = 55.5 bits (132), Expect = 2e-07
Identities = 81/271 (29%), Positives = 95/271 (35%), Gaps = 62/271 (22%)
Query: 312 GPPAHPG----PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGA 367
G P PG PG+ + PP P G + G QGLP G
Sbjct: 552 GLPGAPGLRGLPGKDGETGAAGPPG-------PAGPAGERGEQGAPGPSGFQGLPGPPGP 604
Query: 368 PDMGSSGEGAGL--EEGSP----LRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP 421
P G G+ E G+P R ER +P GL G GLP +P
Sbjct: 605 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQ--GPRGLPG------TP 656
Query: 422 KTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ-IGRVRVPLGSALPYPARSEL 480
T+ GP+G+ SGP GP GPP G+Q + R G A P R ++
Sbjct: 657 GTD--GPKGA------SGPAGPPGAQGPP-------GLQGMPGERGAAGIAGPKGDRGDV 701
Query: 481 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR 540
G A D R G G P P A GE PPGP
Sbjct: 702 GEKGPEGAPGKDGGRGLTGPIG---------PPGPAGANGEKGEVG---------PPGPA 743
Query: 541 G--GAMSAAGTRSPPGPAESARSRGPRPGWD 569
G GA A G R GP A GP PG D
Sbjct: 744 GSAGARGAPGERGETGPPGPAGFAGP-PGAD 773
Score = 53.1 bits (126), Expect = 1e-06
Identities = 85/297 (28%), Positives = 105/297 (35%), Gaps = 63/297 (21%)
Query: 299 RSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTP--RGRQSLAEGVKRD 356
+ P L P +GP GP P + P P L G P RG +A G K D
Sbjct: 647 QGPRGLPGTPGTDGPKGASGPAGPPGAQGP--PGL------QGMPGERGAAGIA-GPKGD 697
Query: 357 GGQ-GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQ 415
G G EGAP G G G GL P+ PP P E G G P
Sbjct: 698 RGDVGEKGPEGAP--GKDG-GRGLT--GPIG------PPG---PAGANGEKGEVGPP--- 740
Query: 416 RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRD-------RRHLGVQIGRV---- 464
GP+ G +G+ G +GP GP GPP D + Q G
Sbjct: 741 --GPAGSA---GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 795
Query: 465 -RVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRG-----VRSGREGLLSP----- 513
+ P G+ P P GAR A P PG G +G G P
Sbjct: 796 PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG 855
Query: 514 --APRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRG 563
P+ A G++ P + ++ P GP G G +G PPGP A RG
Sbjct: 856 KDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 912
Score = 51.6 bits (122), Expect = 3e-06
Identities = 78/277 (28%), Positives = 93/277 (33%), Gaps = 69/277 (24%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
G PGP PS +P P P+ + P+G + G QG P G P G
Sbjct: 789 GDAGAPGPQGPSGAPGPQGPTGVT------GPKGAR---------GAQGPPGATGFP--G 831
Query: 372 SSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGS 431
++G R PP S P P G K RG S GP G
Sbjct: 832 AAG--------------RVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS------GPPGR 871
Query: 432 LGRASLSGPFGP----------GPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
G L GP GP GP G GPP + L Q G V +P R E
Sbjct: 872 AGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPG--PQGLAGQRGIVGLP-------GQRGE 922
Query: 480 LAPPGARDALSPDPERPCPGTRGVRS-----GREGLLSPA----PRSALGETAPTAQFTF 530
PG ++ PG G R G GL PA + G P +
Sbjct: 923 RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGA 982
Query: 531 RKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 565
V+ G G GA A G PGPA +G R
Sbjct: 983 AGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR 1019
Score = 48.1 bits (113), Expect = 3e-05
Identities = 85/295 (28%), Positives = 95/295 (32%), Gaps = 90/295 (30%)
Query: 308 PHFNGPPAHPGP-GRPSTS-----PCPL-PPSLLCLWVESGT--------PRGRQSLAEG 352
P GP PG G P S P P+ PP L E G P GR A G
Sbjct: 926 PGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAA-G 984
Query: 353 VKRDGGQ-------GLPDVEGAP----------DMGSSGEGAGLEEGSPLRRERAWPPPS 395
VK D G+ G P G+P D G +G + P P
Sbjct: 985 VKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG 1044
Query: 396 LRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRR 455
R E G GL K RG + L GP G G SGP GP GPP
Sbjct: 1045 PRGDKGEAGEPGERGL--KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPG---- 1098
Query: 456 HLGVQIGRVRVPLGSALPYPARSELAPPGARDALS--PDPERPCPGTRGVRSGREGLLSP 513
P+G P +D + P P P PG RG RSG G
Sbjct: 1099 -----------PVG-------------PSGKDGANGIPGPIGP-PGPRG-RSGETG---- 1128
Query: 514 APRSALGETAPTAQFTFRKVRNPPGPRGGA--MSAAGTRSPPGPAESARSRGPRP 566
P G P PPGP G MSA P R +GP P
Sbjct: 1129 -PAGPPGNPGPP---------GPPGPPGPGIDMSAFAGLGP-------REKGPDP 1166
Score = 47.8 bits (112), Expect = 4e-05
Identities = 88/345 (25%), Positives = 111/345 (32%), Gaps = 59/345 (17%)
Query: 268 RSGAPRMFIVYHVAAGLPILPPAGHTLRLP-PRSPP-RLGRAPHFNGPPAHPGPGRPSTS 325
R GAP+ ++ + +L G +R P P+ G GP PGP P+
Sbjct: 3 RLGAPQTLVLLTLLVAA-VLRCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGE 61
Query: 326 PCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPL 385
P + PRGR G G P G P +G G A G
Sbjct: 62 QGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLG--GNFAAQMAGGFD 119
Query: 386 RRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGP 445
+ ++ P + G P P P+ G P G G +SGP GP
Sbjct: 120 EKAGGAQLGVMQGPMGPMGPRG----PPGPAGAPGPQGFQGNP-GEPGEPGVSGPMGPRG 174
Query: 446 QGGPPSR--------------DRRHLGVQIGRVRVPLGSALP-------YP----ARSEL 480
GPP + +R G Q G P LP YP A+ E
Sbjct: 175 PPGPPGKPGDDGEAGKPGKAGERGPPGPQ-GARGFPGTPGLPGVKGHRGYPGLDGAKGEA 233
Query: 481 APPGARDALSPDPERPCPGTRGVRS--GREGLLSPA----PRSALGETAPTAQFTFRKVR 534
PG + E PG G R G G PA R G+ P
Sbjct: 234 GAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPA--------- 284
Query: 535 NPPGPRG--------GAMSAAGTRSPPGPAESARSRGPRPGWDTP 571
PPGP G GA A G P G ++GPR TP
Sbjct: 285 GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP 329
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 69.3 bits (168), Expect = 1e-11
Identities = 106/360 (29%), Positives = 130/360 (36%), Gaps = 104/360 (28%)
Query: 298 PRSPPRLGRAPHFNGPPAHPG----PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGV 353
P P L P +GPP HPG PG P P + PRG + A+G+
Sbjct: 746 PLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGP----IGYPGPRGVKG-ADGI 800
Query: 354 K-------RDGGQGLPDVEGAPDMGSSGE-------GAGLEEGSPLRRERAWP---PPSL 396
+ G G P +G DMG G+ G E+G + R P P L
Sbjct: 801 RGLKGTKGEKGEDGFPGFKG--DMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPL 858
Query: 397 RTP-------TPGLT----------------------EGGGTGLPSKQ----RRGPS-PK 422
P PGL E GG G P K +RGP+ P+
Sbjct: 859 GPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPR 918
Query: 423 TELG--------GPQGSLGRASLSGPFG-------------PGPQG--GPPSRD------ 453
E G GP+G+ G +GP G PGP+G GPP +D
Sbjct: 919 GERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHP 978
Query: 454 --RRHLGVQIGRVRV--PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGR 507
R G Q G+ P G P E P G R P P P PG +G+ +G+
Sbjct: 979 GQRGETGFQ-GKTGPPGPPGVVGPQGPTGETGPMGERG--HPGPPGP-PGEQGLPGLAGK 1034
Query: 508 EGLL-SPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP 564
EG P P G+ P F R PGP G G G PPGPA S RGP
Sbjct: 1035 EGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGP 1094
Score = 66.6 bits (161), Expect = 9e-11
Identities = 81/270 (30%), Positives = 102/270 (37%), Gaps = 34/270 (12%)
Query: 312 GPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGA 367
GP PGP G P P P + E G P G+ L DG G P EG
Sbjct: 712 GPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKG-PLGKPGLPGMPGADGPPGHPGKEGP 770
Query: 368 PDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG- 426
P GE G P + +P P G+ GT + P K ++G
Sbjct: 771 P-----GEKGGQGPPGP-QGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGI 824
Query: 427 -GPQGSLGRASLSGPFGP-GPQG-GPPSRDRRHLGV--QIGRVRVPLGSALP-YPARSEL 480
G +G +G G GP GP+G G P+ D LG + G++ VP LP YP R
Sbjct: 825 KGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVP---GLPGYPGRQ-- 879
Query: 481 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR 540
P G+ PG G + GR P PR G T P + R + PGP+
Sbjct: 880 GPKGSIGFPG------FPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPK 933
Query: 541 G-----GAMSAAGTRSPPGPAESARSRGPR 565
G G G R P GP GP+
Sbjct: 934 GNSGGDGPAGPPGERGPNGPQGPTGFPGPK 963
Score = 66.6 bits (161), Expect = 9e-11
Identities = 98/338 (28%), Positives = 121/338 (35%), Gaps = 75/338 (22%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPPSLLCLWVESGT-- 342
P G T P+ PP P +G P HPG G + P PP ++ +G
Sbjct: 953 PQGPTGFPGPKGPPG---PPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETG 1009
Query: 343 ------------PRGRQSLA-----EGVKRDGGQ-GLPDVEGAPDMGSSGEGAGLEE--- 381
P G Q L EG K D G GLP +G P + GL
Sbjct: 1010 PMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVG 1069
Query: 382 GSPLRRERAWPPPSLRTPTPG----LTEGGGTGLPSKQ--RRGPSPKTELG-----GPQG 430
L+ P P +PG G G+P + + P P E G GPQG
Sbjct: 1070 ALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQG 1129
Query: 431 SLGRASLSGPFG-PGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARD 487
GR L GP G PGP G GPP D G + P G + E PPG
Sbjct: 1130 PAGRDGLQGPVGLPGPAGPVGPPGEDG-----DKGEIGEP-GQKGSKGDKGEQGPPGPTG 1183
Query: 488 ALSPDPERPCPGTRGVRS-----GREGLL----SPAPRSALGETAPTAQFTFRKVRNPPG 538
P + PG G G++GL PR G P + + PPG
Sbjct: 1184 PQGPIGQ---PGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVG---LQGLPGPPG 1237
Query: 539 PRG--GAMSAAGTRSPPGPAESARSRGP--RPGWDTPE 572
+G G + G PPGP RGP PG D P+
Sbjct: 1238 EKGETGDVGQMGPPGPPGP------RGPSGAPGADGPQ 1269
Score = 55.8 bits (133), Expect = 2e-07
Identities = 85/296 (28%), Positives = 97/296 (32%), Gaps = 73/296 (24%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGG------------- 358
GPP GP P P P E G PRG+Q L G K D G
Sbjct: 1177 GPPGPTGPQGPIGQPGPSGAD-----GEPG-PRGQQGLF-GQKGDEGPRGFPGPPGPVGL 1229
Query: 359 QGLPDVEGAP----DMGSSGE----GAGLEEGSPLRRERAWPPPSLRTP-------TPGL 403
QGLP G D+G G G G+P PP + P PG
Sbjct: 1230 QGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPG- 1288
Query: 404 TEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGR 463
E G GLP + GGP G G G GP GPP + G
Sbjct: 1289 -EAGEPGLPGE-----------GGPPGPKGERGEKGESGPSGAAGPPG-PKGPPGDD--- 1332
Query: 464 VRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETA 523
P GS P + PPG D PG +G SP P G +
Sbjct: 1333 --GPKGSPGPVGFPGDPGPPGEPGPAGQDGP---PGDKGDDGEPGQTGSPGPTGEPGPSG 1387
Query: 524 PTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARSRGP--RPGWD 569
P + R PPGP G GA AG PPG +G +PG D
Sbjct: 1388 PPGK------RGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPD 1437
Score = 54.7 bits (130), Expect = 3e-07
Identities = 86/285 (30%), Positives = 105/285 (36%), Gaps = 60/285 (21%)
Query: 301 PPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQ 359
PP P +GP PGP G P P PP E G P G+ G K D G+
Sbjct: 1322 PPGPKGPPGDDGPKGSPGPVGFPGD---PGPPG------EPG-PAGQDG-PPGDKGDDGE 1370
Query: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPP-PSLRTPTPGLT-EGGGTGLPSKQ-- 415
P G+P G +GE G P +R P P R G E G G P K
Sbjct: 1371 --PGQTGSP--GPTGEPG--PSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGP 1424
Query: 416 --------RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP 467
+ GP + GP G G GP GP GPP G++
Sbjct: 1425 IGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLP----GLK------- 1473
Query: 468 LGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQ 527
G + P + E PG + P E+ G RG+ G +G S P+ G T P+
Sbjct: 1474 -GDSGP---KGEKGHPGLIGLIGPPGEQGEKGDRGL-PGPQG--SSGPKGEQGITGPSGP 1526
Query: 528 FTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRGPRPG 567
PPGP G G A G+ P GP A GP PG
Sbjct: 1527 I------GPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGP-PG 1564
Score = 50.1 bits (118), Expect = 8e-06
Identities = 108/425 (25%), Positives = 137/425 (32%), Gaps = 96/425 (22%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQS 348
P G T R P PP G G P GP P P P+ G P GR+
Sbjct: 563 PMGLTGRPGPVGPPGSGG---LKGEPGDVGPQGPRGVQGPPGPA--------GKP-GRRG 610
Query: 349 LAEGVKRDGGQGLPDVEGAP-DMGSSGEGAGL--EEGSPLRRERAWPPPSLRTPTPGLTE 405
A DG +G+P G D G G AGL E+G R P PS PG
Sbjct: 611 RAGS---DGARGMPGQTGPKGDRGFDGL-AGLPGEKG-----HRGDPGPSGPPGPPG--- 658
Query: 406 GGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPS--------RDRRHL 457
RG + G G G L GP GP GPP + ++
Sbjct: 659 -------DDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNV 711
Query: 458 GVQ-----IGRVRVPLGSALPYPARSELAPPGARDALS-------PDPERP--CPGTRGV 503
G Q G+ P LP P + + PPG + L P + P PG G
Sbjct: 712 GPQGEPGPPGQQGNPGAQGLPGP-QGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGP 770
Query: 504 RSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----------GAMSAAGTR-- 550
+ G P P+ +G P +R G +G G M G R
Sbjct: 771 PGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGE 830
Query: 551 -SPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEDVCVVTEYL--WEGN 607
PPGP GP+ G P D GPL E + L + G
Sbjct: 831 IGPPGPRGEDGPEGPK-GRGGP-----------NGDPGPLGPPGEKGKLGVPGLPGYPGR 878
Query: 608 SDPKVGSSDPVIPGTKADK-----------KTKMGPMSEEDKRERRSLGVNPRDCSSLDD 656
PK P PG +K + + GP +R R + P +
Sbjct: 879 QGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGG 938
Query: 657 SSPSG 661
P+G
Sbjct: 939 DGPAG 943
Score = 45.1 bits (105), Expect = 3e-04
Identities = 79/299 (26%), Positives = 101/299 (33%), Gaps = 79/299 (26%)
Query: 314 PAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQS------------LAEGVKR-DGGQG 360
P+ GPG P+ ++ G PRG + L EG +G G
Sbjct: 427 PSEIGPGMPANQDT--------IYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAG 478
Query: 361 LPDVEGAPDMGSSGE-GAGLEEGSPLR-----RERAWPPPSLRTPTPGLTEGGGTGLPSK 414
LP G MG +G+ G E G P R + PP P GGG
Sbjct: 479 LPGPPGT--MGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDA---- 532
Query: 415 QRRGPSPKTE--------------LGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ 460
+GP + L GP G +G GP GP P G + +G Q
Sbjct: 533 GSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGP-PGSGGLKGEPGDVGPQ 591
Query: 461 IGR-VRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGR--EGLLS-PAPR 516
R V+ P G A PG R D R PG G + R +GL P +
Sbjct: 592 GPRGVQGPPGPA---------GKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEK 642
Query: 517 SALGETAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARSRGPRPG 567
G+ P+ PPGP G G + G PGP +GP PG
Sbjct: 643 GHRGDPGPS---------GPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGP-PG 691
Score = 43.1 bits (100), Expect = 0.001
Identities = 56/164 (34%), Positives = 66/164 (40%), Gaps = 39/164 (23%)
Query: 312 GPPAHPGPGRPSTSPCPL-PPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDM 370
G P PGP P P P+ PP L L +SG P+G + G GL + G P
Sbjct: 1450 GLPGSPGPDGP---PGPMGPPGLPGLKGDSG-PKGEK---------GHPGLIGLIGPP-- 1494
Query: 371 GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG 430
G GE + +R P P + G E G TG PS P P L GP G
Sbjct: 1495 GEQGE----------KGDRGLPGPQGSSGPKG--EQGITG-PSGPIGPPGPPG-LPGPPG 1540
Query: 431 SLGRASLSGPFGP-------GPQG--GPPSRDRRHLGVQIGRVR 465
G SGP GP GP G GPP + L +Q R R
Sbjct: 1541 PKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTR 1584
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 68.9 bits (167), Expect = 2e-11
Identities = 94/309 (30%), Positives = 111/309 (35%), Gaps = 52/309 (16%)
Query: 282 AGLPILPPAGHTLRLP-PRSPPRLGRAPHFNGPPAHPGP--GRPSTSPCPLPPSLLCLWV 338
AG P P P R PP L AP G PGP G+ + P P PP
Sbjct: 665 AGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP-PGPPGA----- 718
Query: 339 ESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRT 398
+GTP G Q + GG G P +G D G G G G + G P + P +
Sbjct: 719 -AGTP-GLQGMPG---ERGGLGSPGPKG--DKGEPG-GPGAD-GVPGKDGPRGPTGPIGP 769
Query: 399 PTPG-----LTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-------PGPQ 446
P P EGG GLP + GP+GS G +GP G PG
Sbjct: 770 PGPAGQPGDKGEGGAPGLPG-----------IAGPRGSPGERGETGPPGPAGFPGAPGQN 818
Query: 447 GGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS- 505
G P + R + G P G A P PPG + ER PG G
Sbjct: 819 GEPGGKGERGAPGEKGEGGPP-GVAGPPGGSGPAGPPGPQGVKG---ERGSPGGPGAAGF 874
Query: 506 -GREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSR 562
G GL P P + G P PPGP G GA + G P G A +
Sbjct: 875 PGARGL--PGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEK 932
Query: 563 GPRPGWDTP 571
G PG P
Sbjct: 933 G-SPGAQGP 940
Score = 66.2 bits (160), Expect = 1e-10
Identities = 87/288 (30%), Positives = 101/288 (35%), Gaps = 50/288 (17%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQS 348
P G +R P SP P +G P PG S P P PS PRG+
Sbjct: 530 PGGPGMRGMPGSPG----GPGSDGKPGPPGSQGESGRPGPPGPS---------GPRGQPG 576
Query: 349 LAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWP--PPSLRTPTPGLTEG 406
+ G G P G G G +G P + P PP PT +
Sbjct: 577 VMGFPGPKGNDGAPGKNGE----RGGPGGPGPQGPPGKNGETGPQGPPG---PTGPGGDK 629
Query: 407 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG----PGPQGG------PPSRDRRH 456
G TG P Q P T GGP G G+ GP G PG GG P R
Sbjct: 630 GDTGPPGPQGLQGLPGT--GGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPG 687
Query: 457 LGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPR 516
L G +R G P + PPG P PG +G+ R GL SP P+
Sbjct: 688 LAGAPG-LRGGAGPPGPEGGKGAAGPPG------PPGAAGTPGLQGMPGERGGLGSPGPK 740
Query: 517 SALGET-APTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRG 563
GE P A V GPRG G PPGPA +G
Sbjct: 741 GDKGEPGGPGAD----GVPGKDGPRG----PTGPIGPPGPAGQPGDKG 780
Score = 65.5 bits (158), Expect = 2e-10
Identities = 83/291 (28%), Positives = 99/291 (34%), Gaps = 51/291 (17%)
Query: 302 PRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGL 361
P G P NG P PGP + +P G P G+ G +G
Sbjct: 644 PGTGGPPGENGKPGEPGPKGDAGAP--------------GAPGGKGDAGA----PGERGP 685
Query: 362 PDVEGAPDMGSSGEGAGLEEGSPLRRERAWPP-PSLRTPTPGLT----EGGGTGLPSKQR 416
P + GAP + G E G + A PP P TPGL E GG G P +
Sbjct: 686 PGLAGAPGLRGGAGPPGPEGG----KGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPK- 740
Query: 417 RGPSPKTELGGP-----QGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSA 471
K E GGP G G +GP GP G P + + P GS
Sbjct: 741 ---GDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSP 797
Query: 472 LPYPARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSP----APRSALGETAPT 525
R E PPG + PG +G R G +G P P G P
Sbjct: 798 ---GERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPP 854
Query: 526 AQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGP-----RPGWDTP 571
+ R PG G A G R PGP S + GP PG D P
Sbjct: 855 GPQGVKGERGSPGGPGAA-GFPGARGLPGPPGSNGNPGPPGPSGSPGKDGP 904
Score = 59.7 bits (143), Expect = 1e-08
Identities = 90/325 (27%), Positives = 113/325 (34%), Gaps = 67/325 (20%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTPRGRQ 347
P GH P PP + +P G G PG P PP P G
Sbjct: 373 PQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPG----------PAGAN 422
Query: 348 SLAEGVKRDGGQGLPDVEGAP-DMGSSGEG--AGLEEGSPLRRERAWPPPSLRTPTPGLT 404
A G++ GG G P GA + G GE AG+ + E + +PG
Sbjct: 423 G-APGLR--GGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG------KDGSPG-- 471
Query: 405 EGGGTGLPSKQR-------RGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHL 457
E G GLP RGP+ + G +G G GP GP G P RD
Sbjct: 472 EPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRD---- 527
Query: 458 GVQIG-RVRVPLGSALPYPARSELAPPGAR-DALSPDPERP------------------- 496
GV G +R GS + + PPG++ ++ P P P
Sbjct: 528 GVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGND 587
Query: 497 -CPGTRGVRSGREGLLSPAPRSALGET------APTAQFTFRKVRNPPGPRGGAMSAAGT 549
PG G R G G P GET PT + PPGP+ G GT
Sbjct: 588 GAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQ-GLQGLPGT 646
Query: 550 RSPPGPAESARSRGPRPGWDTPEKG 574
PPG E+ + P P D G
Sbjct: 647 GGPPG--ENGKPGEPGPKGDAGAPG 669
Score = 58.9 bits (141), Expect = 2e-08
Identities = 89/329 (27%), Positives = 119/329 (36%), Gaps = 62/329 (18%)
Query: 267 PRSGAPRMFIVYHVAAGLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPG-------P 319
P++ +P+ + Y V +G+ + AG+ P PP G P PG P
Sbjct: 148 PQNYSPQ-YDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEP 206
Query: 320 GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLP---------DVEGAPDM 370
G+ S P PP + P G+ + R G +GLP + G P M
Sbjct: 207 GQAGPSGPPGPPGA----IGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGM 262
Query: 371 -GSSG-EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGP 428
G G +G E+G T PGL G GLP + P P G P
Sbjct: 263 KGHRGFDGRNGEKG--------------ETGAPGLK--GENGLPG-ENGAPGPMGPRGAP 305
Query: 429 QGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYP--ARSELAPPGAR 486
G GR L G G G D Q G P + P A+ E+ P G+
Sbjct: 306 -GERGRPGLPGAAGARGNDGARGSDG-----QPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359
Query: 487 DALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAM 544
+ +R PG +G +G +G P P G + GP G GA
Sbjct: 360 GSNGAPGQRGEPGPQG-HAGAQG--PPGPPGINGSPGGKGEM---------GPAGIPGAP 407
Query: 545 SAAGTRSPPGPAESARSRGPRPGWDTPEK 573
G R PPGPA + + G R G P K
Sbjct: 408 GLMGARGPPGPAGANGAPGLRGGAGEPGK 436
Score = 55.5 bits (132), Expect = 2e-07
Identities = 89/324 (27%), Positives = 103/324 (31%), Gaps = 70/324 (21%)
Query: 307 APHFNGPPAHPG----------------PGRPSTSPCPLP---------PSLLCLWVESG 341
+P GPP PG PG P P P P L E G
Sbjct: 934 SPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERG 993
Query: 342 T--PRGRQSLAEGVKRDGGQGLPDVEGAP--DMGSSGEGAGLEEGSPLRRERAWPPPSLR 397
P+G LA G G P +G P D G+G E GSP
Sbjct: 994 PPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSP------------- 1040
Query: 398 TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG----PGPQGGPPSRD 453
PG G G P GP+ K+ G G G A GP G PGPQG P D
Sbjct: 1041 -GAPGAP--GHPGPPGPV--GPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQG--PRGD 1093
Query: 454 RRHLGVQ-----------IGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRG 502
+ G + G P GS P + + PG P PG G
Sbjct: 1094 KGETGERGAAGIKGHRGFPGNPGAP-GSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDG 1152
Query: 503 VRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARS 561
SG G + P PR GE PPGP G G G A A
Sbjct: 1153 T-SGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCG---GVGAAAIAGI 1208
Query: 562 RGPRPGWDTPEKGDHLLSFTMQED 585
G + G P GD + F + D
Sbjct: 1209 GGEKAGGFAPYYGDEPMDFKINTD 1232
Score = 48.1 bits (113), Expect = 3e-05
Identities = 84/326 (25%), Positives = 103/326 (31%), Gaps = 79/326 (24%)
Query: 285 PILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTP 343
P PP G + P P G P NG P PG PG P + P PP + P
Sbjct: 95 PTRPPNGQGPQGPKGDPGPPG-IPGRNGDPGIPGQPGSPGS---PGPPGIC-----ESCP 145
Query: 344 RGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGL 403
G Q+ + P S +G+ G PP P P
Sbjct: 146 TGPQNYS-----------------PQYDSYDVKSGVAVGGLAGYPGPAGPPG--PPGPPG 186
Query: 404 TEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQI 461
T G G G P Q GP + GP G G GP GP + G R R
Sbjct: 187 TSGHPGSPGSPGYQ--GPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRP----- 239
Query: 462 GRVRVPLGSALPYPA--------------------RSELAPPGARDALSPDPERPCPGTR 501
G +P + PA + E PG + E PG
Sbjct: 240 GERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPM 299
Query: 502 GVRS-----GREGLLSPA-------PRSALGETAPTAQFTFRKVRNPPGPRG-------- 541
G R GR GL A R + G+ P PG +G
Sbjct: 300 GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359
Query: 542 GAMSAAGTRSPPGPAESARSRGPRPG 567
G+ A G R PGP A ++GP PG
Sbjct: 360 GSNGAPGQRGEPGPQGHAGAQGP-PG 384
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 68.9 bits (167), Expect = 2e-11
Identities = 99/355 (27%), Positives = 128/355 (36%), Gaps = 96/355 (27%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVK--- 354
P+ P L P +GPP HPG P + PS + PRG + + +G++
Sbjct: 588 PQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGV-DGIRGLK 646
Query: 355 ----RDGGQGLPDVEGAPDMGSSGE-------GAGLEEGSPLRRERAWP-----PPSL-- 396
G G P +G D+G G+ G+ E+G + R P PP L
Sbjct: 647 GHKGEKGEDGFPGFKG--DIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMG 704
Query: 397 ---RTPTPGLT----------------------EGGGTGLPSKQ----RRGPSPKTELGG 427
+ PGL E G GL K RGP+ G
Sbjct: 705 EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRG 764
Query: 428 PQGSLGRASLSGPFG-------------PGPQG-----------GPPSRD--------RR 455
P+G+ G++ G G PGPQG GPP +D R
Sbjct: 765 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRG 824
Query: 456 HLGVQIGRVRV--PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLL 511
+G Q G+ P G P A E P G R P P P PG +G+ +G+EG
Sbjct: 825 EVGFQ-GKTGPPGPPGVVGPQGAAGETGPMGERG--HPGPPGP-PGEQGLPGTAGKEGTK 880
Query: 512 -SPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 563
P P A G+ P F R PG G G G PPGPA S RG
Sbjct: 881 GDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERG 935
Score = 61.2 bits (147), Expect = 4e-09
Identities = 96/330 (29%), Positives = 119/330 (36%), Gaps = 81/330 (24%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPPSLLCLWVESGT----------- 342
P+ PP P +G P HPG G + P PP ++ +G
Sbjct: 804 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 860
Query: 343 ---PRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTP 399
P G Q L ++G +G P GAP G G AGL G P ER P +
Sbjct: 861 PPGPPGEQGLPGTAGKEGTKGDPGPPGAP--GKDGP-AGLR-GFP--GERGLPGTA---- 910
Query: 400 TPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPG----PQGGPPSRDRR 455
GG GL K GPS G G G A GP GP PQG P + +
Sbjct: 911 -------GGPGL--KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEK 961
Query: 456 HLGVQIG--------RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGR 507
+ + G V+ P+G LP PA PPG E PG +G + +
Sbjct: 962 GVPGEKGPIGPTGRDGVQGPVG--LPGPA----GPPGVAGEDGDKGEVGDPGQKGTKGNK 1015
Query: 508 EGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTR---SPPGPAESA 559
P P +G P Q PG RG GA GTR PPGP
Sbjct: 1016 GEHGPPGPPGPIG---PVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQ 1072
Query: 560 RSRGPRPGWDTPEKGDHLLSFTMQEDVGPL 589
GP + EKG+ DVGP+
Sbjct: 1073 GLPGP-----SGEKGE-------TGDVGPM 1090
Score = 59.3 bits (142), Expect = 1e-08
Identities = 77/264 (29%), Positives = 96/264 (36%), Gaps = 38/264 (14%)
Query: 310 FNGPPAH------PGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPD 363
FNGPP PGP + P + P G + A DG QG P
Sbjct: 1062 FNGPPGPIGLQGLPGPSGEKGETGDVGP------MGPPGPPGPRGPAGPNGADGPQGPPG 1115
Query: 364 VEGAPDMGSSGE-GAGLEEGSP-LRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP 421
G ++G GE G E GSP ++ E P ++ P E G +G P + P P
Sbjct: 1116 --GVGNLGPPGEKGEPGESGSPGIQGE-----PGVKGPRGERGEKGESGQPGEPGP-PGP 1167
Query: 422 KTELG--GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
K G GP+G+ G G GP +GGP +D G P P P E
Sbjct: 1168 KGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAK--GDRGEDGEPGQPGSPGPT-GE 1224
Query: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
PPG P PG+ G + G+ P A G+T P P G
Sbjct: 1225 NGPPGPLGKRGP---AGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1281
Query: 540 RG--------GAMSAAGTRSPPGP 555
RG G A G PPGP
Sbjct: 1282 RGLPGSVGQQGRPGATGQAGPPGP 1305
Score = 44.3 bits (103), Expect = 5e-04
Identities = 102/383 (26%), Positives = 128/383 (33%), Gaps = 70/383 (18%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPL--PPSLLCLWVESGTPRGR 346
P G+T R P P +P G GP P P L PP +G R
Sbjct: 405 PMGYTGRPGPLGQPG---SPGLKGESGDLGPQGPR-GPQGLTGPPGKAGRRGRAGADGAR 460
Query: 347 QSLAE-GVKRDGG-QGLPDVEGAP----DMGSSG-EGAGLEEGSPLRRERAWPP--PSLR 397
+ GVK D G GLP + G D G+ G G E+G P P
Sbjct: 461 GMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGES 520
Query: 398 TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG---SLGRASLSGPFG----------PG 444
P L G G+P GP + GPQG SLG GP G PG
Sbjct: 521 GPRGLLGPKGPPGIP-----GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 575
Query: 445 PQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPD-PERPC--PGTR 501
PQG + + G +P GS P + PPG + P P+ P PG R
Sbjct: 576 PQGAIGPHGEKGPQGKPGLPGMP-GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 634
Query: 502 GVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESA 559
GV+ G +G+ R G + F + G +G G + G+R GP
Sbjct: 635 GVK-GVDGI-----RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPK 688
Query: 560 RSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEDVCVVTEYL--WEGNSDPKVGSSDP 617
GP D GP E + L + G PK P
Sbjct: 689 GRTGP------------------TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFP 730
Query: 618 VIPGTKADK-----KTKMGPMSE 635
PG +K K GP E
Sbjct: 731 GFPGASGEKGARGLSGKSGPRGE 753
Score = 41.6 bits (96), Expect = 0.003
Identities = 74/275 (26%), Positives = 95/275 (34%), Gaps = 74/275 (26%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTP--RGRQSLAEGVKRDGGQ-GLPDVEG-- 366
G P PGP + P PL +G+P GRQ +G K D G G P G
Sbjct: 1214 GQPGSPGPTGENGPPGPLGKR-----GPAGSPGSEGRQG-GKGAKGDPGAIGAPGKTGPV 1267
Query: 367 ---------APDMGSSGEGAGLEEGSPLRRERAWPPPSLRTP-TPGLTEGGGT------- 409
PD G+ ++G P +A PP + P PGL G
Sbjct: 1268 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHP 1327
Query: 410 ------GLPSKQRRGPSPKTELGGPQGS------LGRASLSGPFGPGPQGGPPSRDRRHL 457
G P +Q G L GPQGS +G SGP GP GGPP
Sbjct: 1328 GLIGLIGPPGEQ--GEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP---GGPP------- 1375
Query: 458 GVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREG----LLSP 513
LP PA P GA+ A P + G +G G G ++ P
Sbjct: 1376 -------------GLPGPA----GPKGAKGATGPGGPKGEKGVQG-PPGHPGPPGEVIQP 1417
Query: 514 APRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 548
P +T + + + P GGA + G
Sbjct: 1418 LPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1452
Score = 36.6 bits (83), Expect = 0.095
Identities = 65/234 (27%), Positives = 79/234 (33%), Gaps = 60/234 (25%)
Query: 380 EEGSPLRRERAWPPPSLRTPTPGLTEG---------------GGTGLPSKQRRGPSPKTE 424
++ S L R + P S + PTPG E G GL K +G E
Sbjct: 250 QQPSRLHRPQNQEPQS-QDPTPGEEEEILESSLLPPLEEAAHGPRGL--KGEKGEPAVLE 306
Query: 425 LG----GPQGSLGRASLSGPFG----PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPA 476
G GP G G A L GP G PGP G P R GR +P P P
Sbjct: 307 PGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERG------PPGRAGLPGSDGAPGPP 360
Query: 477 RSELAPP-------GARDALSPDPE--------------RPCPGTRGVRSGREGLL---- 511
+ L P G + + E R PG G +GR G L
Sbjct: 361 GTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGY-TGRPGPLGQPG 419
Query: 512 SPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 563
SP + G+ P + + PPG G G A G R PG RG
Sbjct: 420 SPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRG 473
Score = 31.2 bits (69), Expect = 4.0
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 16/70 (22%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
GPP HPGP P P+ + R+S+ DG + + + E P G
Sbjct: 1403 GPPGHPGPPGEVIQPLPIQMP----------KKTRRSV------DGSRLMQEDEAIPTGG 1446
Query: 372 SSGEGAGLEE 381
+ G GLEE
Sbjct: 1447 APGSPGGLEE 1456
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 68.9 bits (167), Expect = 2e-11
Identities = 99/355 (27%), Positives = 128/355 (36%), Gaps = 96/355 (27%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVK--- 354
P+ P L P +GPP HPG P + PS + PRG + + +G++
Sbjct: 567 PQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGV-DGIRGLK 625
Query: 355 ----RDGGQGLPDVEGAPDMGSSGE-------GAGLEEGSPLRRERAWP-----PPSL-- 396
G G P +G D+G G+ G+ E+G + R P PP L
Sbjct: 626 GHKGEKGEDGFPGFKG--DIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMG 683
Query: 397 ---RTPTPGLT----------------------EGGGTGLPSKQ----RRGPSPKTELGG 427
+ PGL E G GL K RGP+ G
Sbjct: 684 EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRG 743
Query: 428 PQGSLGRASLSGPFG-------------PGPQG-----------GPPSRD--------RR 455
P+G+ G++ G G PGPQG GPP +D R
Sbjct: 744 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRG 803
Query: 456 HLGVQIGRVRV--PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLL 511
+G Q G+ P G P A E P G R P P P PG +G+ +G+EG
Sbjct: 804 EVGFQ-GKTGPPGPPGVVGPQGAAGETGPMGERG--HPGPPGP-PGEQGLPGTAGKEGTK 859
Query: 512 -SPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 563
P P A G+ P F R PG G G G PPGPA S RG
Sbjct: 860 GDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERG 914
Score = 61.2 bits (147), Expect = 4e-09
Identities = 96/330 (29%), Positives = 119/330 (36%), Gaps = 81/330 (24%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPPSLLCLWVESGT----------- 342
P+ PP P +G P HPG G + P PP ++ +G
Sbjct: 783 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 839
Query: 343 ---PRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTP 399
P G Q L ++G +G P GAP G G AGL G P ER P +
Sbjct: 840 PPGPPGEQGLPGTAGKEGTKGDPGPPGAP--GKDGP-AGLR-GFP--GERGLPGTA---- 889
Query: 400 TPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPG----PQGGPPSRDRR 455
GG GL K GPS G G G A GP GP PQG P + +
Sbjct: 890 -------GGPGL--KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEK 940
Query: 456 HLGVQIG--------RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGR 507
+ + G V+ P+G LP PA PPG E PG +G + +
Sbjct: 941 GVPGEKGPIGPTGRDGVQGPVG--LPGPA----GPPGVAGEDGDKGEVGDPGQKGTKGNK 994
Query: 508 EGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTR---SPPGPAESA 559
P P +G P Q PG RG GA GTR PPGP
Sbjct: 995 GEHGPPGPPGPIG---PVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQ 1051
Query: 560 RSRGPRPGWDTPEKGDHLLSFTMQEDVGPL 589
GP + EKG+ DVGP+
Sbjct: 1052 GLPGP-----SGEKGE-------TGDVGPM 1069
Score = 59.3 bits (142), Expect = 1e-08
Identities = 77/264 (29%), Positives = 96/264 (36%), Gaps = 38/264 (14%)
Query: 310 FNGPPAH------PGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPD 363
FNGPP PGP + P + P G + A DG QG P
Sbjct: 1041 FNGPPGPIGLQGLPGPSGEKGETGDVGP------MGPPGPPGPRGPAGPNGADGPQGPPG 1094
Query: 364 VEGAPDMGSSGE-GAGLEEGSP-LRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP 421
G ++G GE G E GSP ++ E P ++ P E G +G P + P P
Sbjct: 1095 --GVGNLGPPGEKGEPGESGSPGIQGE-----PGVKGPRGERGEKGESGQPGEPGP-PGP 1146
Query: 422 KTELG--GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
K G GP+G+ G G GP +GGP +D G P P P E
Sbjct: 1147 KGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAK--GDRGEDGEPGQPGSPGPT-GE 1203
Query: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
PPG P PG+ G + G+ P A G+T P P G
Sbjct: 1204 NGPPGPLGKRGP---AGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1260
Query: 540 RG--------GAMSAAGTRSPPGP 555
RG G A G PPGP
Sbjct: 1261 RGLPGSVGQQGRPGATGQAGPPGP 1284
Score = 44.3 bits (103), Expect = 5e-04
Identities = 102/383 (26%), Positives = 128/383 (33%), Gaps = 70/383 (18%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPL--PPSLLCLWVESGTPRGR 346
P G+T R P P +P G GP P P L PP +G R
Sbjct: 384 PMGYTGRPGPLGQPG---SPGLKGESGDLGPQGPR-GPQGLTGPPGKAGRRGRAGADGAR 439
Query: 347 QSLAE-GVKRDGG-QGLPDVEGAP----DMGSSG-EGAGLEEGSPLRRERAWPP--PSLR 397
+ GVK D G GLP + G D G+ G G E+G P P
Sbjct: 440 GMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGES 499
Query: 398 TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG---SLGRASLSGPFG----------PG 444
P L G G+P GP + GPQG SLG GP G PG
Sbjct: 500 GPRGLLGPKGPPGIP-----GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 554
Query: 445 PQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPD-PERPC--PGTR 501
PQG + + G +P GS P + PPG + P P+ P PG R
Sbjct: 555 PQGAIGPHGEKGPQGKPGLPGMP-GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 613
Query: 502 GVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESA 559
GV+ G +G+ R G + F + G +G G + G+R GP
Sbjct: 614 GVK-GVDGI-----RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPK 667
Query: 560 RSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEDVCVVTEYL--WEGNSDPKVGSSDP 617
GP D GP E + L + G PK P
Sbjct: 668 GRTGP------------------TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFP 709
Query: 618 VIPGTKADK-----KTKMGPMSE 635
PG +K K GP E
Sbjct: 710 GFPGASGEKGARGLSGKSGPRGE 732
Score = 41.6 bits (96), Expect = 0.003
Identities = 74/275 (26%), Positives = 95/275 (34%), Gaps = 74/275 (26%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTP--RGRQSLAEGVKRDGGQ-GLPDVEG-- 366
G P PGP + P PL +G+P GRQ +G K D G G P G
Sbjct: 1193 GQPGSPGPTGENGPPGPLGKR-----GPAGSPGSEGRQG-GKGAKGDPGAIGAPGKTGPV 1246
Query: 367 ---------APDMGSSGEGAGLEEGSPLRRERAWPPPSLRTP-TPGLTEGGGT------- 409
PD G+ ++G P +A PP + P PGL G
Sbjct: 1247 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHP 1306
Query: 410 ------GLPSKQRRGPSPKTELGGPQGS------LGRASLSGPFGPGPQGGPPSRDRRHL 457
G P +Q G L GPQGS +G SGP GP GGPP
Sbjct: 1307 GLIGLIGPPGEQ--GEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP---GGPP------- 1354
Query: 458 GVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREG----LLSP 513
LP PA P GA+ A P + G +G G G ++ P
Sbjct: 1355 -------------GLPGPA----GPKGAKGATGPGGPKGEKGVQG-PPGHPGPPGEVIQP 1396
Query: 514 APRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 548
P +T + + + P GGA + G
Sbjct: 1397 LPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1431
Score = 35.8 bits (81), Expect = 0.16
Identities = 48/168 (28%), Positives = 57/168 (33%), Gaps = 38/168 (22%)
Query: 427 GPQGSLGRASLSGPFG----PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 482
GP G G A L GP G PGP G P R GR +P P P + L
Sbjct: 292 GPPGPEGPAGLIGPPGIQGNPGPVGDPGERG------PPGRAGLPGSDGAPGPPGTSLML 345
Query: 483 P-------GARDALSPDPE--------------RPCPGTRGVRSGREGLL----SPAPRS 517
P G + + E R PG G +GR G L SP +
Sbjct: 346 PFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGY-TGRPGPLGQPGSPGLKG 404
Query: 518 ALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 563
G+ P + + PPG G G A G R PG RG
Sbjct: 405 ESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRG 452
Score = 31.2 bits (69), Expect = 4.0
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 16/70 (22%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
GPP HPGP P P+ + R+S+ DG + + + E P G
Sbjct: 1382 GPPGHPGPPGEVIQPLPIQMP----------KKTRRSV------DGSRLMQEDEAIPTGG 1425
Query: 372 SSGEGAGLEE 381
+ G GLEE
Sbjct: 1426 APGSPGGLEE 1435
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 68.9 bits (167), Expect = 2e-11
Identities = 99/355 (27%), Positives = 128/355 (36%), Gaps = 96/355 (27%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVK--- 354
P+ P L P +GPP HPG P + PS + PRG + + +G++
Sbjct: 674 PQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGV-DGIRGLK 732
Query: 355 ----RDGGQGLPDVEGAPDMGSSGE-------GAGLEEGSPLRRERAWP-----PPSL-- 396
G G P +G D+G G+ G+ E+G + R P PP L
Sbjct: 733 GHKGEKGEDGFPGFKG--DIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMG 790
Query: 397 ---RTPTPGLT----------------------EGGGTGLPSKQ----RRGPSPKTELGG 427
+ PGL E G GL K RGP+ G
Sbjct: 791 EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRG 850
Query: 428 PQGSLGRASLSGPFG-------------PGPQG-----------GPPSRD--------RR 455
P+G+ G++ G G PGPQG GPP +D R
Sbjct: 851 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRG 910
Query: 456 HLGVQIGRVRV--PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLL 511
+G Q G+ P G P A E P G R P P P PG +G+ +G+EG
Sbjct: 911 EVGFQ-GKTGPPGPPGVVGPQGAAGETGPMGERG--HPGPPGP-PGEQGLPGTAGKEGTK 966
Query: 512 -SPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 563
P P A G+ P F R PG G G G PPGPA S RG
Sbjct: 967 GDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERG 1021
Score = 61.2 bits (147), Expect = 4e-09
Identities = 96/330 (29%), Positives = 119/330 (36%), Gaps = 81/330 (24%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPPSLLCLWVESGT----------- 342
P+ PP P +G P HPG G + P PP ++ +G
Sbjct: 890 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 946
Query: 343 ---PRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTP 399
P G Q L ++G +G P GAP G G AGL G P ER P +
Sbjct: 947 PPGPPGEQGLPGTAGKEGTKGDPGPPGAP--GKDGP-AGLR-GFP--GERGLPGTA---- 996
Query: 400 TPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPG----PQGGPPSRDRR 455
GG GL K GPS G G G A GP GP PQG P + +
Sbjct: 997 -------GGPGL--KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEK 1047
Query: 456 HLGVQIG--------RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGR 507
+ + G V+ P+G LP PA PPG E PG +G + +
Sbjct: 1048 GVPGEKGPIGPTGRDGVQGPVG--LPGPA----GPPGVAGEDGDKGEVGDPGQKGTKGNK 1101
Query: 508 EGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTR---SPPGPAESA 559
P P +G P Q PG RG GA GTR PPGP
Sbjct: 1102 GEHGPPGPPGPIG---PVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQ 1158
Query: 560 RSRGPRPGWDTPEKGDHLLSFTMQEDVGPL 589
GP + EKG+ DVGP+
Sbjct: 1159 GLPGP-----SGEKGE-------TGDVGPM 1176
Score = 59.3 bits (142), Expect = 1e-08
Identities = 77/264 (29%), Positives = 96/264 (36%), Gaps = 38/264 (14%)
Query: 310 FNGPPAH------PGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPD 363
FNGPP PGP + P + P G + A DG QG P
Sbjct: 1148 FNGPPGPIGLQGLPGPSGEKGETGDVGP------MGPPGPPGPRGPAGPNGADGPQGPPG 1201
Query: 364 VEGAPDMGSSGE-GAGLEEGSP-LRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP 421
G ++G GE G E GSP ++ E P ++ P E G +G P + P P
Sbjct: 1202 --GVGNLGPPGEKGEPGESGSPGIQGE-----PGVKGPRGERGEKGESGQPGEPGP-PGP 1253
Query: 422 KTELG--GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
K G GP+G+ G G GP +GGP +D G P P P E
Sbjct: 1254 KGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAK--GDRGEDGEPGQPGSPGPT-GE 1310
Query: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
PPG P PG+ G + G+ P A G+T P P G
Sbjct: 1311 NGPPGPLGKRGP---AGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1367
Query: 540 RG--------GAMSAAGTRSPPGP 555
RG G A G PPGP
Sbjct: 1368 RGLPGSVGQQGRPGATGQAGPPGP 1391
Score = 44.3 bits (103), Expect = 5e-04
Identities = 102/383 (26%), Positives = 128/383 (33%), Gaps = 70/383 (18%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPL--PPSLLCLWVESGTPRGR 346
P G+T R P P +P G GP P P L PP +G R
Sbjct: 491 PMGYTGRPGPLGQPG---SPGLKGESGDLGPQGPR-GPQGLTGPPGKAGRRGRAGADGAR 546
Query: 347 QSLAE-GVKRDGG-QGLPDVEGAP----DMGSSG-EGAGLEEGSPLRRERAWPP--PSLR 397
+ GVK D G GLP + G D G+ G G E+G P P
Sbjct: 547 GMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGES 606
Query: 398 TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG---SLGRASLSGPFG----------PG 444
P L G G+P GP + GPQG SLG GP G PG
Sbjct: 607 GPRGLLGPKGPPGIP-----GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPG 661
Query: 445 PQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPD-PERPC--PGTR 501
PQG + + G +P GS P + PPG + P P+ P PG R
Sbjct: 662 PQGAIGPHGEKGPQGKPGLPGMP-GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 720
Query: 502 GVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESA 559
GV+ G +G+ R G + F + G +G G + G+R GP
Sbjct: 721 GVK-GVDGI-----RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPK 774
Query: 560 RSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEDVCVVTEYL--WEGNSDPKVGSSDP 617
GP D GP E + L + G PK P
Sbjct: 775 GRTGP------------------TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFP 816
Query: 618 VIPGTKADK-----KTKMGPMSE 635
PG +K K GP E
Sbjct: 817 GFPGASGEKGARGLSGKSGPRGE 839
Score = 41.6 bits (96), Expect = 0.003
Identities = 74/275 (26%), Positives = 95/275 (34%), Gaps = 74/275 (26%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTP--RGRQSLAEGVKRDGGQ-GLPDVEG-- 366
G P PGP + P PL +G+P GRQ +G K D G G P G
Sbjct: 1300 GQPGSPGPTGENGPPGPLGKR-----GPAGSPGSEGRQG-GKGAKGDPGAIGAPGKTGPV 1353
Query: 367 ---------APDMGSSGEGAGLEEGSPLRRERAWPPPSLRTP-TPGLTEGGGT------- 409
PD G+ ++G P +A PP + P PGL G
Sbjct: 1354 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHP 1413
Query: 410 ------GLPSKQRRGPSPKTELGGPQGS------LGRASLSGPFGPGPQGGPPSRDRRHL 457
G P +Q G L GPQGS +G SGP GP GGPP
Sbjct: 1414 GLIGLIGPPGEQ--GEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP---GGPP------- 1461
Query: 458 GVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREG----LLSP 513
LP PA P GA+ A P + G +G G G ++ P
Sbjct: 1462 -------------GLPGPA----GPKGAKGATGPGGPKGEKGVQG-PPGHPGPPGEVIQP 1503
Query: 514 APRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 548
P +T + + + P GGA + G
Sbjct: 1504 LPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1538
Score = 39.3 bits (90), Expect = 0.015
Identities = 67/241 (27%), Positives = 80/241 (33%), Gaps = 49/241 (20%)
Query: 358 GQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRR 417
G+G D P + G G E + L P S T G G GL K +
Sbjct: 333 GEGGTDPPEGPYDYTYGYGDDYREETELG-----PALSAETAHSGAAAHGPRGL--KGEK 385
Query: 418 GPSPKTELG----GPQGSLGRASLSGPFG----PGPQGGPPSRDRRHLGVQIGRVRVPLG 469
G E G GP G G A L GP G PGP G P R GR +P
Sbjct: 386 GEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERG------PPGRAGLPGS 439
Query: 470 SALPYPARSELAPP-------GARDALSPDPE--------------RPCPGTRGVRSGRE 508
P P + L P G + + E R PG G +GR
Sbjct: 440 DGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGY-TGRP 498
Query: 509 GLL----SPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSR 562
G L SP + G+ P + + PPG G G A G R PG R
Sbjct: 499 GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDR 558
Query: 563 G 563
G
Sbjct: 559 G 559
Score = 31.2 bits (69), Expect = 4.0
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 16/70 (22%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
GPP HPGP P P+ + R+S+ DG + + + E P G
Sbjct: 1489 GPPGHPGPPGEVIQPLPIQMP----------KKTRRSV------DGSRLMQEDEAIPTGG 1532
Query: 372 SSGEGAGLEE 381
+ G GLEE
Sbjct: 1533 APGSPGGLEE 1542
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 66.6 bits (161), Expect = 9e-11
Identities = 94/328 (28%), Positives = 120/328 (36%), Gaps = 60/328 (18%)
Query: 285 PILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPR 344
PI PP P+ P L P +GPP HPG S L P + PR
Sbjct: 719 PIGPPG----EKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 774
Query: 345 GRQSLAEGVK-------RDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLR 397
G + A+GV+ G G P +G DMG G+ + + P + P
Sbjct: 775 GVKG-ADGVRGLKGSKGEKGEDGFPGFKG--DMGLKGDRGEVGQIGPRGEDGPEGPKGRA 831
Query: 398 TPT--PGLT----EGGGTGLPS----KQRRGPSPKTEL------GGPQGSLGRASLSGPF 441
PT PG + E G G+P R+GP T G +G+ G A GP
Sbjct: 832 GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 891
Query: 442 GP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS-PDPERP--- 496
G GP G SR R + G G P P E P G + + P P+ P
Sbjct: 892 GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP-GERGPQGPQGPVGFPGPKGPPGP 950
Query: 497 --------CPGTRGVRSGREGLLSP-------APRSALGETAPTAQFTFRKVRNPPGPRG 541
PG RG +G +G P P+ GET P + R PPGP G
Sbjct: 951 PGKDGLPGHPGQRG-ETGFQGKTGPPGPGGVVGPQGPTGETGPIGE---RGHPGPPGPPG 1006
Query: 542 -----GAMSAAGTRSPPGPAESARSRGP 564
GA G + PGP + GP
Sbjct: 1007 EQGLPGAAGKEGAKGDPGPQGISGKDGP 1034
Score = 62.4 bits (150), Expect = 2e-09
Identities = 90/331 (27%), Positives = 108/331 (32%), Gaps = 75/331 (22%)
Query: 283 GLPILP-PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVES 340
GLP P G T PP G GP GP G P PP E
Sbjct: 955 GLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPG------EQ 1008
Query: 341 GTPRGRQSLAEGVKRDGG-------------------QGLPDVEGAPDM--GSSGEGAGL 379
G P EG K D G +GLP +GAP + G +G
Sbjct: 1009 GLPGAAGK--EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPG 1066
Query: 380 EEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG 439
GSP R A + P G G P+ ++ P K GPQG GR + G
Sbjct: 1067 PVGSPGERGSAGTAGPIGLP--GRPGPQGPPGPAGEKGAPGEK----GPQGPAGRDGVQG 1120
Query: 440 PFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCP 498
P G PGP G P GS + E+ PG + + E P
Sbjct: 1121 PVGLPGPAG-------------------PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPP 1161
Query: 499 GTRGVRS--GREGLL----SPAPRSALGETAPTAQFTFRKVRNPPGPRG----------- 541
G G++ G G+ P PR G R PPGP G
Sbjct: 1162 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEK 1221
Query: 542 GAMSAAGTRSPPGPAESARSRGPRPGWDTPE 572
G G PPGP +GP G D P+
Sbjct: 1222 GENGDVGPMGPPGPPGPRGPQGPN-GADGPQ 1251
Score = 61.2 bits (147), Expect = 4e-09
Identities = 81/277 (29%), Positives = 99/277 (35%), Gaps = 57/277 (20%)
Query: 312 GPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGA 367
GP PGP G P P P + E G P+G+ LA DG G P EG
Sbjct: 694 GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKG-PQGKPGLAGLPGADGPPGHPGKEG- 751
Query: 368 PDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT-------EGGGTGLPS------- 413
SGE L P + +P P G+ E G G P
Sbjct: 752 ----QSGEKGALGPPGP-QGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGL 806
Query: 414 KQRRGP----SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLG 469
K RG P+ E GP+G GRA +G GP Q G + G++ VP
Sbjct: 807 KGDRGEVGQIGPRGE-DGPEGPKGRAGPTGDPGPSGQAG-----------EKGKLGVP-- 852
Query: 470 SALP-YPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQF 528
LP YP R P G+ PG G + R P PR G T P
Sbjct: 853 -GLPGYPGRQ--GPKGSTGFPG------FPGANGEKGARGVAGKPGPRGQRGPTGPRGSR 903
Query: 529 TFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPR 565
R PGP+G +G PPGP +GP+
Sbjct: 904 GARGPTGKPGPKG----TSGGDGPPGPPGERGPQGPQ 936
Score = 55.5 bits (132), Expect = 2e-07
Identities = 71/260 (27%), Positives = 87/260 (33%), Gaps = 61/260 (23%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
GPP PGP P + P+G V G +G P G P G
Sbjct: 1231 GPPGPPGPRGPQGPN------------GADGPQGPPGSVGSVGGVGEKGEPGEAGNP--G 1276
Query: 372 SSGE-GAGLEEGSPLRRERAWPPPSLRTPTPGLTEG--------GGTGLPSKQ----RRG 418
GE G G +G + A PP + P G G G P G
Sbjct: 1277 PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPG 1336
Query: 419 PSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARS 478
P+ + +GG +G G GP GP + GPP P G
Sbjct: 1337 PAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPG---------------PPG--------- 1372
Query: 479 ELAPPGARDALSPDPERPCPGTRGVRSGREGLLSP-APRSALGETAPTAQFTFRKVRNPP 537
+ PPGA A E+ G G G G P P+ G+ P +R P
Sbjct: 1373 KRGPPGAAGAEGRQGEKGAKGEAGA-EGPPGKTGPVGPQGPAGKPGPEG------LRGIP 1425
Query: 538 GPRG--GAMSAAGTRSPPGP 555
GP G G AAG PPGP
Sbjct: 1426 GPVGEQGLPGAAGQDGPPGP 1445
Score = 55.1 bits (131), Expect = 3e-07
Identities = 81/287 (28%), Positives = 100/287 (34%), Gaps = 58/287 (20%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQ 347
P G PP P GPP GP G P P P P G
Sbjct: 1286 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG----------PPGEP 1335
Query: 348 SLA--EGVKRDGGQ-GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT 404
A +GV D G+ G P G P G SGE G P PP R P
Sbjct: 1336 GPAGQDGVGGDKGEDGDPGQPGPP--GPSGEA-----GPP-------GPPGKRGPP---- 1377
Query: 405 EGGGTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIG 462
G G +Q +G + GP G +GP GP GP G P R + +G
Sbjct: 1378 --GAAGAEGRQGEKGAKGEAGAEGPPGK------TGPVGPQGPAGKPGPEGLRGIPGPVG 1429
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALG 520
+P G+A + PPG L D PG++G + G GL+ P G
Sbjct: 1430 EQGLP-GAAGQDGPPGPMGPPGL-PGLKGD-----PGSKGEKGHPGLIGLIGPP-----G 1477
Query: 521 ETAPTAQFTFRKVRNPPGPR--GGAMSAAGTRSPPGPAESARSRGPR 565
E + PG + GG AG PPGP +GP+
Sbjct: 1478 EQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1524
Score = 48.9 bits (115), Expect = 2e-05
Identities = 80/291 (27%), Positives = 100/291 (34%), Gaps = 66/291 (22%)
Query: 301 PPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQ 359
PP P +GP +PGP G P P PP E G P G+ + DG
Sbjct: 1304 PPGAKGPPGDDGPKGNPGPVGFPGD---PGPPG------EPG-PAGQDGVGGDKGEDGDP 1353
Query: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSL----RTPTPGLT-EGGGTGLPSK 414
G P G P G SGE G P + PP + R G E G G P K
Sbjct: 1354 GQP---GPP--GPSGEA-----GPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGK 1403
Query: 415 Q----------RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRV 464
+ GP + GP G G +G GP GPP + +
Sbjct: 1404 TGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPG---------LPGL 1454
Query: 465 RVPLGSALPYPARSELAPPGARDALSPDPE------RPCPGTRGVRSGREGLLSPAPRSA 518
+ GS + E PG + P E R PGT+G + P P
Sbjct: 1455 KGDPGS------KGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP 1508
Query: 519 LGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPG 567
LG P + P GP+G G+ AG + G S GP PG
Sbjct: 1509 LGPPGPPG------LPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP-PG 1552
Score = 47.8 bits (112), Expect = 4e-05
Identities = 90/342 (26%), Positives = 110/342 (32%), Gaps = 89/342 (26%)
Query: 286 ILPPAGHTLRLPPRSPPRLGRAPHFNGPPAH--------PGPGRPSTSPCPLPPSLLCLW 337
IL A LR PP GR GP + PGP P P P+
Sbjct: 531 ILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPT----- 585
Query: 338 VESGTP--RGRQSLAEGVKRDGGQGLPDVEGAP-DMGSSG-EGAGLEEGSPLRRERAWPP 393
G P RGR DGG+G+P GA D G G G ++G R PP
Sbjct: 586 ---GKPGKRGRPGA------DGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPP 636
Query: 394 --------------------PSLRTPTPGLTEGGGTGLPSKQRRG-----PSPKTELG-- 426
P P L G G P + P PK +G
Sbjct: 637 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 696
Query: 427 ------GPQGSLGRASLSGPFGP-------GPQG-----------GPPSRDRRHLGVQIG 462
G QG+ G L GP GP GPQG GPP + Q G
Sbjct: 697 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE--GQSG 754
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLS-PAPRSALGE 521
G+ P + + PG R D R G++G G +G G+
Sbjct: 755 E----KGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKG-EKGEDGFPGFKGDMGLKGD 809
Query: 522 TAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRG 563
Q R P GP+G AG PGP+ A +G
Sbjct: 810 RGEVGQIGPRGEDGPEGPKG----RAGPTGDPGPSGQAGEKG 847
Score = 47.4 bits (111), Expect = 5e-05
Identities = 89/336 (26%), Positives = 108/336 (32%), Gaps = 75/336 (22%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGV 353
P+ PP +P G GP GRP P P E G P G +
Sbjct: 1061 PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG------EKGAP-GEKGPQGPA 1113
Query: 354 KRDGGQGLPDVEG-APDMGSSGE-GAGLEEGSPLRR-------ERAWP-PPSLRTPT--P 401
RDG QG + G A GS GE G E G P ++ E P PP L+ P P
Sbjct: 1114 GRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAP 1173
Query: 402 GLTEGGGTGLPSKQR-----------RG-------------PSPKTELG----------- 426
G+ G G P Q+ RG P P E G
Sbjct: 1174 GIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPP 1233
Query: 427 ---GPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVP--LGSALPYPARSEL 480
GP+G G GP G PG G + + G P G P R E
Sbjct: 1234 GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEK 1293
Query: 481 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVR------ 534
G A P + PG G + + P GE P Q +
Sbjct: 1294 GEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDP 1353
Query: 535 ---NPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 565
PPGP G G G R PPG A + +G +
Sbjct: 1354 GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEK 1389
Score = 44.3 bits (103), Expect = 5e-04
Identities = 71/279 (25%), Positives = 91/279 (32%), Gaps = 45/279 (16%)
Query: 301 PPRLGRAPHFNGPPAHPGPGRPSTSPCPL-PPSLLCLWVESGTPRGRQSLAEGVKRDGGQ 359
PP GPP GP P P PP L G P ++ R GG
Sbjct: 455 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGD 514
Query: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGP 419
G +G + + + + + R P P T PG G G+ + P
Sbjct: 515 GS---KGPTISAQEAQAQAILQQARIAL-RGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 570
Query: 420 SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
P+ GP+G + GP PGP G P R GR G +P
Sbjct: 571 GPQ----GPRG------VQGP--PGPTGKPGKR---------GRPGADGGRGMP------ 603
Query: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
PGA+ D PG +G R R P P G + R + GP
Sbjct: 604 -GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGP 662
Query: 540 RG-----------GAMSAAGTRSPPGPAESARSRGPRPG 567
RG G AG PPGP + +G PG
Sbjct: 663 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG-EPG 700
Score = 43.1 bits (100), Expect = 0.001
Identities = 64/213 (30%), Positives = 81/213 (38%), Gaps = 20/213 (9%)
Query: 358 GQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRR 417
G G+P + +G GA E+G P + P G G P Q
Sbjct: 414 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQ-- 471
Query: 418 GPSPKTELGGPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPA 476
GP+ G +G GR L G G PGP G R+ G + P SA A
Sbjct: 472 GPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGG---DGSKGPTISAQEAQA 528
Query: 477 RSELAPPGARDALSPDPERPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRN 535
++ L AR AL R PG G+ +GR G + P A GE+ R V+
Sbjct: 529 QAILQQ--ARIAL-----RGPPGPMGL-TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQG 580
Query: 536 PPGPRG-----GAMSAAGTRSPPGPAESARSRG 563
PPGP G G A G R PG + RG
Sbjct: 581 PPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRG 613
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 66.6 bits (161), Expect = 9e-11
Identities = 94/328 (28%), Positives = 120/328 (36%), Gaps = 60/328 (18%)
Query: 285 PILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPR 344
PI PP P+ P L P +GPP HPG S L P + PR
Sbjct: 668 PIGPPG----EKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 723
Query: 345 GRQSLAEGVK-------RDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLR 397
G + A+GV+ G G P +G DMG G+ + + P + P
Sbjct: 724 GVKG-ADGVRGLKGSKGEKGEDGFPGFKG--DMGLKGDRGEVGQIGPRGEDGPEGPKGRA 780
Query: 398 TPT--PGLT----EGGGTGLPS----KQRRGPSPKTEL------GGPQGSLGRASLSGPF 441
PT PG + E G G+P R+GP T G +G+ G A GP
Sbjct: 781 GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 840
Query: 442 GP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS-PDPERP--- 496
G GP G SR R + G G P P E P G + + P P+ P
Sbjct: 841 GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP-GERGPQGPQGPVGFPGPKGPPGP 899
Query: 497 --------CPGTRGVRSGREGLLSP-------APRSALGETAPTAQFTFRKVRNPPGPRG 541
PG RG +G +G P P+ GET P + R PPGP G
Sbjct: 900 PGKDGLPGHPGQRG-ETGFQGKTGPPGPGGVVGPQGPTGETGPIGE---RGHPGPPGPPG 955
Query: 542 -----GAMSAAGTRSPPGPAESARSRGP 564
GA G + PGP + GP
Sbjct: 956 EQGLPGAAGKEGAKGDPGPQGISGKDGP 983
Score = 62.4 bits (150), Expect = 2e-09
Identities = 90/331 (27%), Positives = 108/331 (32%), Gaps = 75/331 (22%)
Query: 283 GLPILP-PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVES 340
GLP P G T PP G GP GP G P PP E
Sbjct: 904 GLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPG------EQ 957
Query: 341 GTPRGRQSLAEGVKRDGG-------------------QGLPDVEGAPDM--GSSGEGAGL 379
G P EG K D G +GLP +GAP + G +G
Sbjct: 958 GLPGAAGK--EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPG 1015
Query: 380 EEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG 439
GSP R A + P G G P+ ++ P K GPQG GR + G
Sbjct: 1016 PVGSPGERGSAGTAGPIGLP--GRPGPQGPPGPAGEKGAPGEK----GPQGPAGRDGVQG 1069
Query: 440 PFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCP 498
P G PGP G P GS + E+ PG + + E P
Sbjct: 1070 PVGLPGPAG-------------------PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPP 1110
Query: 499 GTRGVRS--GREGLL----SPAPRSALGETAPTAQFTFRKVRNPPGPRG----------- 541
G G++ G G+ P PR G R PPGP G
Sbjct: 1111 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEK 1170
Query: 542 GAMSAAGTRSPPGPAESARSRGPRPGWDTPE 572
G G PPGP +GP G D P+
Sbjct: 1171 GENGDVGPMGPPGPPGPRGPQGPN-GADGPQ 1200
Score = 61.2 bits (147), Expect = 4e-09
Identities = 81/277 (29%), Positives = 99/277 (35%), Gaps = 57/277 (20%)
Query: 312 GPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGA 367
GP PGP G P P P + E G P+G+ LA DG G P EG
Sbjct: 643 GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKG-PQGKPGLAGLPGADGPPGHPGKEG- 700
Query: 368 PDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT-------EGGGTGLPS------- 413
SGE L P + +P P G+ E G G P
Sbjct: 701 ----QSGEKGALGPPGP-QGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGL 755
Query: 414 KQRRGP----SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLG 469
K RG P+ E GP+G GRA +G GP Q G + G++ VP
Sbjct: 756 KGDRGEVGQIGPRGE-DGPEGPKGRAGPTGDPGPSGQAG-----------EKGKLGVP-- 801
Query: 470 SALP-YPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQF 528
LP YP R P G+ PG G + R P PR G T P
Sbjct: 802 -GLPGYPGRQ--GPKGSTGFPG------FPGANGEKGARGVAGKPGPRGQRGPTGPRGSR 852
Query: 529 TFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPR 565
R PGP+G +G PPGP +GP+
Sbjct: 853 GARGPTGKPGPKG----TSGGDGPPGPPGERGPQGPQ 885
Score = 55.5 bits (132), Expect = 2e-07
Identities = 71/260 (27%), Positives = 87/260 (33%), Gaps = 61/260 (23%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
GPP PGP P + P+G V G +G P G P G
Sbjct: 1180 GPPGPPGPRGPQGPN------------GADGPQGPPGSVGSVGGVGEKGEPGEAGNP--G 1225
Query: 372 SSGE-GAGLEEGSPLRRERAWPPPSLRTPTPGLTEG--------GGTGLPSKQ----RRG 418
GE G G +G + A PP + P G G G P G
Sbjct: 1226 PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPG 1285
Query: 419 PSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARS 478
P+ + +GG +G G GP GP + GPP P G
Sbjct: 1286 PAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPG---------------PPG--------- 1321
Query: 479 ELAPPGARDALSPDPERPCPGTRGVRSGREGLLSP-APRSALGETAPTAQFTFRKVRNPP 537
+ PPGA A E+ G G G G P P+ G+ P +R P
Sbjct: 1322 KRGPPGAAGAEGRQGEKGAKGEAGA-EGPPGKTGPVGPQGPAGKPGPEG------LRGIP 1374
Query: 538 GPRG--GAMSAAGTRSPPGP 555
GP G G AAG PPGP
Sbjct: 1375 GPVGEQGLPGAAGQDGPPGP 1394
Score = 55.1 bits (131), Expect = 3e-07
Identities = 81/287 (28%), Positives = 100/287 (34%), Gaps = 58/287 (20%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQ 347
P G PP P GPP GP G P P P P G
Sbjct: 1235 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG----------PPGEP 1284
Query: 348 SLA--EGVKRDGGQ-GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT 404
A +GV D G+ G P G P G SGE G P PP R P
Sbjct: 1285 GPAGQDGVGGDKGEDGDPGQPGPP--GPSGEA-----GPP-------GPPGKRGPP---- 1326
Query: 405 EGGGTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIG 462
G G +Q +G + GP G +GP GP GP G P R + +G
Sbjct: 1327 --GAAGAEGRQGEKGAKGEAGAEGPPGK------TGPVGPQGPAGKPGPEGLRGIPGPVG 1378
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALG 520
+P G+A + PPG L D PG++G + G GL+ P G
Sbjct: 1379 EQGLP-GAAGQDGPPGPMGPPGL-PGLKGD-----PGSKGEKGHPGLIGLIGPP-----G 1426
Query: 521 ETAPTAQFTFRKVRNPPGPR--GGAMSAAGTRSPPGPAESARSRGPR 565
E + PG + GG AG PPGP +GP+
Sbjct: 1427 EQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1473
Score = 48.9 bits (115), Expect = 2e-05
Identities = 80/291 (27%), Positives = 100/291 (34%), Gaps = 66/291 (22%)
Query: 301 PPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQ 359
PP P +GP +PGP G P P PP E G P G+ + DG
Sbjct: 1253 PPGAKGPPGDDGPKGNPGPVGFPGD---PGPPG------EPG-PAGQDGVGGDKGEDGDP 1302
Query: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSL----RTPTPGLT-EGGGTGLPSK 414
G P G P G SGE G P + PP + R G E G G P K
Sbjct: 1303 GQP---GPP--GPSGEA-----GPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGK 1352
Query: 415 Q----------RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRV 464
+ GP + GP G G +G GP GPP + +
Sbjct: 1353 TGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPG---------LPGL 1403
Query: 465 RVPLGSALPYPARSELAPPGARDALSPDPE------RPCPGTRGVRSGREGLLSPAPRSA 518
+ GS + E PG + P E R PGT+G + P P
Sbjct: 1404 KGDPGS------KGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP 1457
Query: 519 LGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPG 567
LG P + P GP+G G+ AG + G S GP PG
Sbjct: 1458 LGPPGPPG------LPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP-PG 1501
Score = 47.8 bits (112), Expect = 4e-05
Identities = 90/342 (26%), Positives = 110/342 (32%), Gaps = 89/342 (26%)
Query: 286 ILPPAGHTLRLPPRSPPRLGRAPHFNGPPAH--------PGPGRPSTSPCPLPPSLLCLW 337
IL A LR PP GR GP + PGP P P P+
Sbjct: 480 ILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPT----- 534
Query: 338 VESGTP--RGRQSLAEGVKRDGGQGLPDVEGAP-DMGSSG-EGAGLEEGSPLRRERAWPP 393
G P RGR DGG+G+P GA D G G G ++G R PP
Sbjct: 535 ---GKPGKRGRPGA------DGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPP 585
Query: 394 --------------------PSLRTPTPGLTEGGGTGLPSKQRRG-----PSPKTELG-- 426
P P L G G P + P PK +G
Sbjct: 586 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 645
Query: 427 ------GPQGSLGRASLSGPFGP-------GPQG-----------GPPSRDRRHLGVQIG 462
G QG+ G L GP GP GPQG GPP + Q G
Sbjct: 646 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE--GQSG 703
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLS-PAPRSALGE 521
G+ P + + PG R D R G++G G +G G+
Sbjct: 704 E----KGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKG-EKGEDGFPGFKGDMGLKGD 758
Query: 522 TAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRG 563
Q R P GP+G AG PGP+ A +G
Sbjct: 759 RGEVGQIGPRGEDGPEGPKG----RAGPTGDPGPSGQAGEKG 796
Score = 47.4 bits (111), Expect = 5e-05
Identities = 89/336 (26%), Positives = 108/336 (32%), Gaps = 75/336 (22%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGV 353
P+ PP +P G GP GRP P P E G P G +
Sbjct: 1010 PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG------EKGAP-GEKGPQGPA 1062
Query: 354 KRDGGQGLPDVEG-APDMGSSGE-GAGLEEGSPLRR-------ERAWP-PPSLRTPT--P 401
RDG QG + G A GS GE G E G P ++ E P PP L+ P P
Sbjct: 1063 GRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAP 1122
Query: 402 GLTEGGGTGLPSKQR-----------RG-------------PSPKTELG----------- 426
G+ G G P Q+ RG P P E G
Sbjct: 1123 GIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPP 1182
Query: 427 ---GPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVP--LGSALPYPARSEL 480
GP+G G GP G PG G + + G P G P R E
Sbjct: 1183 GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEK 1242
Query: 481 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVR------ 534
G A P + PG G + + P GE P Q +
Sbjct: 1243 GEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDP 1302
Query: 535 ---NPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 565
PPGP G G G R PPG A + +G +
Sbjct: 1303 GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEK 1338
Score = 44.3 bits (103), Expect = 5e-04
Identities = 71/279 (25%), Positives = 91/279 (32%), Gaps = 45/279 (16%)
Query: 301 PPRLGRAPHFNGPPAHPGPGRPSTSPCPL-PPSLLCLWVESGTPRGRQSLAEGVKRDGGQ 359
PP GPP GP P P PP L G P ++ R GG
Sbjct: 404 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGD 463
Query: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGP 419
G +G + + + + + R P P T PG G G+ + P
Sbjct: 464 GS---KGPTISAQEAQAQAILQQARIAL-RGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 519
Query: 420 SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
P+ GP+G + GP PGP G P R GR G +P
Sbjct: 520 GPQ----GPRG------VQGP--PGPTGKPGKR---------GRPGADGGRGMP------ 552
Query: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
PGA+ D PG +G R R P P G + R + GP
Sbjct: 553 -GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGP 611
Query: 540 RG-----------GAMSAAGTRSPPGPAESARSRGPRPG 567
RG G AG PPGP + +G PG
Sbjct: 612 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG-EPG 649
Score = 43.1 bits (100), Expect = 0.001
Identities = 64/213 (30%), Positives = 81/213 (38%), Gaps = 20/213 (9%)
Query: 358 GQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRR 417
G G+P + +G GA E+G P + P G G P Q
Sbjct: 363 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQ-- 420
Query: 418 GPSPKTELGGPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPA 476
GP+ G +G GR L G G PGP G R+ G + P SA A
Sbjct: 421 GPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGG---DGSKGPTISAQEAQA 477
Query: 477 RSELAPPGARDALSPDPERPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRN 535
++ L AR AL R PG G+ +GR G + P A GE+ R V+
Sbjct: 478 QAILQQ--ARIAL-----RGPPGPMGL-TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQG 529
Query: 536 PPGPRG-----GAMSAAGTRSPPGPAESARSRG 563
PPGP G G A G R PG + RG
Sbjct: 530 PPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRG 562
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 66.6 bits (161), Expect = 9e-11
Identities = 94/328 (28%), Positives = 120/328 (36%), Gaps = 60/328 (18%)
Query: 285 PILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPR 344
PI PP P+ P L P +GPP HPG S L P + PR
Sbjct: 707 PIGPPG----EKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 762
Query: 345 GRQSLAEGVK-------RDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLR 397
G + A+GV+ G G P +G DMG G+ + + P + P
Sbjct: 763 GVKG-ADGVRGLKGSKGEKGEDGFPGFKG--DMGLKGDRGEVGQIGPRGEDGPEGPKGRA 819
Query: 398 TPT--PGLT----EGGGTGLPS----KQRRGPSPKTEL------GGPQGSLGRASLSGPF 441
PT PG + E G G+P R+GP T G +G+ G A GP
Sbjct: 820 GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 879
Query: 442 GP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS-PDPERP--- 496
G GP G SR R + G G P P E P G + + P P+ P
Sbjct: 880 GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP-GERGPQGPQGPVGFPGPKGPPGP 938
Query: 497 --------CPGTRGVRSGREGLLSP-------APRSALGETAPTAQFTFRKVRNPPGPRG 541
PG RG +G +G P P+ GET P + R PPGP G
Sbjct: 939 PGKDGLPGHPGQRG-ETGFQGKTGPPGPGGVVGPQGPTGETGPIGE---RGHPGPPGPPG 994
Query: 542 -----GAMSAAGTRSPPGPAESARSRGP 564
GA G + PGP + GP
Sbjct: 995 EQGLPGAAGKEGAKGDPGPQGISGKDGP 1022
Score = 62.4 bits (150), Expect = 2e-09
Identities = 90/331 (27%), Positives = 108/331 (32%), Gaps = 75/331 (22%)
Query: 283 GLPILP-PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVES 340
GLP P G T PP G GP GP G P PP E
Sbjct: 943 GLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPG------EQ 996
Query: 341 GTPRGRQSLAEGVKRDGG-------------------QGLPDVEGAPDM--GSSGEGAGL 379
G P EG K D G +GLP +GAP + G +G
Sbjct: 997 GLPGAAGK--EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPG 1054
Query: 380 EEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG 439
GSP R A + P G G P+ ++ P K GPQG GR + G
Sbjct: 1055 PVGSPGERGSAGTAGPIGLP--GRPGPQGPPGPAGEKGAPGEK----GPQGPAGRDGVQG 1108
Query: 440 PFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCP 498
P G PGP G P GS + E+ PG + + E P
Sbjct: 1109 PVGLPGPAG-------------------PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPP 1149
Query: 499 GTRGVRS--GREGLL----SPAPRSALGETAPTAQFTFRKVRNPPGPRG----------- 541
G G++ G G+ P PR G R PPGP G
Sbjct: 1150 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEK 1209
Query: 542 GAMSAAGTRSPPGPAESARSRGPRPGWDTPE 572
G G PPGP +GP G D P+
Sbjct: 1210 GENGDVGPMGPPGPPGPRGPQGPN-GADGPQ 1239
Score = 61.2 bits (147), Expect = 4e-09
Identities = 81/277 (29%), Positives = 99/277 (35%), Gaps = 57/277 (20%)
Query: 312 GPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGA 367
GP PGP G P P P + E G P+G+ LA DG G P EG
Sbjct: 682 GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKG-PQGKPGLAGLPGADGPPGHPGKEG- 739
Query: 368 PDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT-------EGGGTGLPS------- 413
SGE L P + +P P G+ E G G P
Sbjct: 740 ----QSGEKGALGPPGP-QGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGL 794
Query: 414 KQRRGP----SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLG 469
K RG P+ E GP+G GRA +G GP Q G + G++ VP
Sbjct: 795 KGDRGEVGQIGPRGE-DGPEGPKGRAGPTGDPGPSGQAG-----------EKGKLGVP-- 840
Query: 470 SALP-YPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQF 528
LP YP R P G+ PG G + R P PR G T P
Sbjct: 841 -GLPGYPGRQ--GPKGSTGFPG------FPGANGEKGARGVAGKPGPRGQRGPTGPRGSR 891
Query: 529 TFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPR 565
R PGP+G +G PPGP +GP+
Sbjct: 892 GARGPTGKPGPKG----TSGGDGPPGPPGERGPQGPQ 924
Score = 55.5 bits (132), Expect = 2e-07
Identities = 71/260 (27%), Positives = 87/260 (33%), Gaps = 61/260 (23%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
GPP PGP P + P+G V G +G P G P G
Sbjct: 1219 GPPGPPGPRGPQGPN------------GADGPQGPPGSVGSVGGVGEKGEPGEAGNP--G 1264
Query: 372 SSGE-GAGLEEGSPLRRERAWPPPSLRTPTPGLTEG--------GGTGLPSKQ----RRG 418
GE G G +G + A PP + P G G G P G
Sbjct: 1265 PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPG 1324
Query: 419 PSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARS 478
P+ + +GG +G G GP GP + GPP P G
Sbjct: 1325 PAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPG---------------PPG--------- 1360
Query: 479 ELAPPGARDALSPDPERPCPGTRGVRSGREGLLSP-APRSALGETAPTAQFTFRKVRNPP 537
+ PPGA A E+ G G G G P P+ G+ P +R P
Sbjct: 1361 KRGPPGAAGAEGRQGEKGAKGEAGA-EGPPGKTGPVGPQGPAGKPGPEG------LRGIP 1413
Query: 538 GPRG--GAMSAAGTRSPPGP 555
GP G G AAG PPGP
Sbjct: 1414 GPVGEQGLPGAAGQDGPPGP 1433
Score = 55.1 bits (131), Expect = 3e-07
Identities = 81/287 (28%), Positives = 100/287 (34%), Gaps = 58/287 (20%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQ 347
P G PP P GPP GP G P P P P G
Sbjct: 1274 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG----------PPGEP 1323
Query: 348 SLA--EGVKRDGGQ-GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT 404
A +GV D G+ G P G P G SGE G P PP R P
Sbjct: 1324 GPAGQDGVGGDKGEDGDPGQPGPP--GPSGEA-----GPP-------GPPGKRGPP---- 1365
Query: 405 EGGGTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIG 462
G G +Q +G + GP G +GP GP GP G P R + +G
Sbjct: 1366 --GAAGAEGRQGEKGAKGEAGAEGPPGK------TGPVGPQGPAGKPGPEGLRGIPGPVG 1417
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALG 520
+P G+A + PPG L D PG++G + G GL+ P G
Sbjct: 1418 EQGLP-GAAGQDGPPGPMGPPGL-PGLKGD-----PGSKGEKGHPGLIGLIGPP-----G 1465
Query: 521 ETAPTAQFTFRKVRNPPGPR--GGAMSAAGTRSPPGPAESARSRGPR 565
E + PG + GG AG PPGP +GP+
Sbjct: 1466 EQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1512
Score = 48.9 bits (115), Expect = 2e-05
Identities = 80/291 (27%), Positives = 100/291 (34%), Gaps = 66/291 (22%)
Query: 301 PPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQ 359
PP P +GP +PGP G P P PP E G P G+ + DG
Sbjct: 1292 PPGAKGPPGDDGPKGNPGPVGFPGD---PGPPG------EPG-PAGQDGVGGDKGEDGDP 1341
Query: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSL----RTPTPGLT-EGGGTGLPSK 414
G P G P G SGE G P + PP + R G E G G P K
Sbjct: 1342 GQP---GPP--GPSGEA-----GPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGK 1391
Query: 415 Q----------RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRV 464
+ GP + GP G G +G GP GPP + +
Sbjct: 1392 TGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPG---------LPGL 1442
Query: 465 RVPLGSALPYPARSELAPPGARDALSPDPE------RPCPGTRGVRSGREGLLSPAPRSA 518
+ GS + E PG + P E R PGT+G + P P
Sbjct: 1443 KGDPGS------KGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP 1496
Query: 519 LGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPG 567
LG P + P GP+G G+ AG + G S GP PG
Sbjct: 1497 LGPPGPPG------LPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP-PG 1540
Score = 47.8 bits (112), Expect = 4e-05
Identities = 90/342 (26%), Positives = 110/342 (32%), Gaps = 89/342 (26%)
Query: 286 ILPPAGHTLRLPPRSPPRLGRAPHFNGPPAH--------PGPGRPSTSPCPLPPSLLCLW 337
IL A LR PP GR GP + PGP P P P+
Sbjct: 519 ILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPT----- 573
Query: 338 VESGTP--RGRQSLAEGVKRDGGQGLPDVEGAP-DMGSSG-EGAGLEEGSPLRRERAWPP 393
G P RGR DGG+G+P GA D G G G ++G R PP
Sbjct: 574 ---GKPGKRGRPGA------DGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPP 624
Query: 394 --------------------PSLRTPTPGLTEGGGTGLPSKQRRG-----PSPKTELG-- 426
P P L G G P + P PK +G
Sbjct: 625 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 684
Query: 427 ------GPQGSLGRASLSGPFGP-------GPQG-----------GPPSRDRRHLGVQIG 462
G QG+ G L GP GP GPQG GPP + Q G
Sbjct: 685 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKE--GQSG 742
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLS-PAPRSALGE 521
G+ P + + PG R D R G++G G +G G+
Sbjct: 743 E----KGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKG-EKGEDGFPGFKGDMGLKGD 797
Query: 522 TAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRG 563
Q R P GP+G AG PGP+ A +G
Sbjct: 798 RGEVGQIGPRGEDGPEGPKG----RAGPTGDPGPSGQAGEKG 835
Score = 47.4 bits (111), Expect = 5e-05
Identities = 89/336 (26%), Positives = 108/336 (32%), Gaps = 75/336 (22%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGV 353
P+ PP +P G GP GRP P P E G P G +
Sbjct: 1049 PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG------EKGAP-GEKGPQGPA 1101
Query: 354 KRDGGQGLPDVEG-APDMGSSGE-GAGLEEGSPLRR-------ERAWP-PPSLRTPT--P 401
RDG QG + G A GS GE G E G P ++ E P PP L+ P P
Sbjct: 1102 GRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAP 1161
Query: 402 GLTEGGGTGLPSKQR-----------RG-------------PSPKTELG----------- 426
G+ G G P Q+ RG P P E G
Sbjct: 1162 GIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPP 1221
Query: 427 ---GPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVP--LGSALPYPARSEL 480
GP+G G GP G PG G + + G P G P R E
Sbjct: 1222 GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEK 1281
Query: 481 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVR------ 534
G A P + PG G + + P GE P Q +
Sbjct: 1282 GEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDP 1341
Query: 535 ---NPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 565
PPGP G G G R PPG A + +G +
Sbjct: 1342 GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEK 1377
Score = 44.3 bits (103), Expect = 5e-04
Identities = 71/279 (25%), Positives = 91/279 (32%), Gaps = 45/279 (16%)
Query: 301 PPRLGRAPHFNGPPAHPGPGRPSTSPCPL-PPSLLCLWVESGTPRGRQSLAEGVKRDGGQ 359
PP GPP GP P P PP L G P ++ R GG
Sbjct: 443 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGD 502
Query: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGP 419
G +G + + + + + R P P T PG G G+ + P
Sbjct: 503 GS---KGPTISAQEAQAQAILQQARIAL-RGPPGPMGLTGRPGPVGGPGSSGAKGESGDP 558
Query: 420 SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
P+ GP+G + GP PGP G P R GR G +P
Sbjct: 559 GPQ----GPRG------VQGP--PGPTGKPGKR---------GRPGADGGRGMP------ 591
Query: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
PGA+ D PG +G R R P P G + R + GP
Sbjct: 592 -GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGP 650
Query: 540 RG-----------GAMSAAGTRSPPGPAESARSRGPRPG 567
RG G AG PPGP + +G PG
Sbjct: 651 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG-EPG 688
Score = 43.1 bits (100), Expect = 0.001
Identities = 64/213 (30%), Positives = 81/213 (38%), Gaps = 20/213 (9%)
Query: 358 GQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRR 417
G G+P + +G GA E+G P + P G G P Q
Sbjct: 402 GPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQ-- 459
Query: 418 GPSPKTELGGPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPA 476
GP+ G +G GR L G G PGP G R+ G + P SA A
Sbjct: 460 GPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGG---DGSKGPTISAQEAQA 516
Query: 477 RSELAPPGARDALSPDPERPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRN 535
++ L AR AL R PG G+ +GR G + P A GE+ R V+
Sbjct: 517 QAILQQ--ARIAL-----RGPPGPMGL-TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQG 568
Query: 536 PPGPRG-----GAMSAAGTRSPPGPAESARSRG 563
PPGP G G A G R PG + RG
Sbjct: 569 PPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRG 601
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 65.9 bits (159), Expect = 1e-10
Identities = 99/311 (31%), Positives = 112/311 (36%), Gaps = 77/311 (24%)
Query: 283 GLP--ILPPAGHTLRLPP--------RSPPRLGRAPHFNGPPAHPGP------GRPSTSP 326
GLP + PP LR P R PP GPP PGP G+P
Sbjct: 129 GLPGKVGPPGQPGLRGEPGIRGDQGLRGPP---------GPPGLPGPSGITIPGKPGAQG 179
Query: 327 CPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLR 386
P PP G P G+K D G G P + GAP G G+P
Sbjct: 180 VPGPPGFQGEPGPQGEPGPPGD--RGLKGDNGVGQPGLPGAPGQG----------GAP-- 225
Query: 387 RERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQ 446
PP L P GL + G GLP P K E GP G G G GP
Sbjct: 226 -----GPPGLPGPA-GLGKPGLDGLPG----APGDKGE-SGPPGVPGPRGEPGAVGP--- 271
Query: 447 GGPPSRDRRHLGVQIGRVRVPLGSALPYP-----ARSELAPPGARDALSPD----PERPC 497
GPP D V VP + LP P A+ E G + P P P
Sbjct: 272 KGPPGVD---------GVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPG 322
Query: 498 P-GTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPA 556
P G RG +G GLL R GE + + + PPG G A G R PPGP
Sbjct: 323 PKGDRG-PAGVPGLL--GDRGEPGEDGEPGEQGPQGLGGPPGLPGSA-GLPGRRGPPGPK 378
Query: 557 ESARSRGPRPG 567
A GP PG
Sbjct: 379 GEAGPGGP-PG 388
Score = 59.7 bits (143), Expect = 1e-08
Identities = 95/299 (31%), Positives = 109/299 (36%), Gaps = 70/299 (23%)
Query: 285 PILPP----AGHTLRLP-PRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVE 339
P+ PP G L +P P P L P GPP PGP P P PP
Sbjct: 51 PVGPPFREGKGQYLEMPLPLLPMDLKGEP---GPPGKPGPRGP-----PGPPGF------ 96
Query: 340 SGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPP--PSLR 397
G P G+ + G G P G P G+ G P + PP P LR
Sbjct: 97 PGKP--------GMGKPGLHGQPGPAGPPGFSRMGKA-----GPPGLPGKVGPPGQPGLR 143
Query: 398 TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQ-----GSLGRASLSGPFG----PGPQGG 448
PG+ G GL RGP L GP G G + GP G PGPQG
Sbjct: 144 -GEPGIR--GDQGL-----RGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGE 195
Query: 449 P-PSRDRRHLGVQ-IGRVRVP----LGSALPYPARSELAPPGARDALSPDPERPCPGTRG 502
P P DR G +G+ +P G A P L P D PG +G
Sbjct: 196 PGPPGDRGLKGDNGVGQPGLPGAPGQGGA---PGPPGLPGPAGLGKPGLDGLPGAPGDKG 252
Query: 503 VRSGREGLLSPAPRSALGETAPTAQFTFRKVRNP-----PGPRG--GAMSAAGTRSPPG 554
SG G+ P PR G P V P PGP+G GA GTR PPG
Sbjct: 253 -ESGPPGV--PGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPG 308
Score = 59.3 bits (142), Expect = 1e-08
Identities = 89/277 (32%), Positives = 101/277 (36%), Gaps = 48/277 (17%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
GPP G G P + P P E GT RG L G G GLP +G D G
Sbjct: 273 GPPGVDGVGVPGAAGLPGPQGPSGAKGEPGT-RGPPGLI-GPTGYGMPGLPGPKG--DRG 328
Query: 372 SSG-------EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTE 424
+G G E+G P + P L P PGL G GLP + R P PK E
Sbjct: 329 PAGVPGLLGDRGEPGEDGEPGEQG----PQGLGGP-PGLP--GSAGLPGR-RGPPGPKGE 380
Query: 425 LGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP-- 482
GP G G + G GP G P GV G +P P P + P
Sbjct: 381 -AGPGGPPGVPGIRGDQGPSGLAGKP-------GVP-GERGLPGAHGPPGPTGPKGEPGF 431
Query: 483 ------PGARDALSPDPERPCPGTRGVR--SGREGLLSPAPRSALGETAPTAQFTFRKVR 534
PG AL + PG G+R SG GL PA G P +
Sbjct: 432 TGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPA-----GPIGPQGLPGLKGEP 486
Query: 535 NPPGP----RGGAMSAAGTRSPPGPAESARSRGPRPG 567
PGP R G AG PPG S GP PG
Sbjct: 487 GLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGP-PG 522
Score = 47.8 bits (112), Expect = 4e-05
Identities = 89/308 (28%), Positives = 103/308 (33%), Gaps = 49/308 (15%)
Query: 281 AAGLP-ILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWV- 338
AAGLP P+G R PP L P G P PGP + P +P L
Sbjct: 285 AAGLPGPQGPSGAKGEPGTRGPPGL-IGPTGYGMPGLPGP-KGDRGPAGVPGLLGDRGEP 342
Query: 339 -ESGTP--RGRQSLAEGVKRDGGQGLPDVEGAPD-MGSSGEG--------------AGLE 380
E G P +G Q L G GLP G P G +G G +GL
Sbjct: 343 GEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA 402
Query: 381 EGSPLRRERAWP----PPSLRTPT--PGLT-------------EGGGTGLPSKQR-RGPS 420
+ ER P PP P PG T + G GLP + RGPS
Sbjct: 403 GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS 462
Query: 421 PKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRR---HLGVQIGRVRVPLGSALPYPAR 477
L GP G +G L G G GPP R G VP + P
Sbjct: 463 GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPP- 521
Query: 478 SELAPPGARDALSPDPERPCPGTRGVRSGREGLL---SPAPRSALGETAPTAQFTFRKVR 534
PPG A E G G EG + P+ LGE + A F V
Sbjct: 522 GPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATPAFTAVL 581
Query: 535 NPPGPRGG 542
P P G
Sbjct: 582 TSPFPASG 589
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 65.9 bits (159), Expect = 1e-10
Identities = 89/310 (28%), Positives = 111/310 (35%), Gaps = 62/310 (20%)
Query: 298 PRSPPRLGRA--PHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKR 355
P P ++G + P GPP GP P P E G P G L +
Sbjct: 594 PGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRG--------ELG-PVGSPGLPGKLGS 644
Query: 356 DGGQGLPDVEGAPDM-GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSK 414
G GLP + G P + G G+ + E P + A E G GLP
Sbjct: 645 LGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGA---SGEEGEAGERGELGDIGLPGP 701
Query: 415 QRRGPSP-KTELGGPQGSLGRASLSGPFG-PGPQG--------------GPPSRD----- 453
+ +P + L GP+GS G + GP G PGP+G GPP R
Sbjct: 702 KGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQH 761
Query: 454 ---------RRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVR 504
+ H ++ P A P R PG P E PG G+R
Sbjct: 762 IKQVCMRVIQEHFAEMAASLKRPDSGATGLPGR-----PGPPGPPGPPGENGFPGQMGIR 816
Query: 505 SGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARS- 561
G G+ P ALG P + R PPG RG G A G PGPA R+
Sbjct: 817 -GLPGI--KGPPGALGLRGPKGDLGEKGERGPPG-RGPNGLPGAIGLPGDPGPASYGRNG 872
Query: 562 ----RGPRPG 567
RGP PG
Sbjct: 873 RDGERGP-PG 881
Score = 52.0 bits (123), Expect = 2e-06
Identities = 81/280 (28%), Positives = 92/280 (32%), Gaps = 66/280 (23%)
Query: 312 GPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGA 367
GPP GP G P P P+G L RDG G+P +G
Sbjct: 508 GPPGEAGPKGDRGAEGARGIPGLPG----------PKGDTGLPGVDGRDGIPGMPGTKGE 557
Query: 368 PDMGSSGEGAGLE-----EGSPLRRERAWPPPSLRTP-TPGLTEGGGTGLPSKQRRGPSP 421
P AGL+ G P + A S P PG + G +G P +Q GP
Sbjct: 558 PGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPG--QMGNSGKPGQQ--GPPG 613
Query: 422 KTELGGPQGSLGRASLSGPFG-------------------PGPQGGPPSRDRRHLGVQIG 462
+ GPQG G GP G PGP G P + R G
Sbjct: 614 EVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDR------G 667
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSP-APRSALGE 521
V P G A E G R L D P P G GL P R G
Sbjct: 668 VVGEP-GPKGEQGASGEEGEAGERGELG-DIGLPGPKGSAGNPGEPGLRGPEGSRGLPGV 725
Query: 522 TAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPA 556
P R PPGPRG GA G + PPG A
Sbjct: 726 EGP---------RGPPGPRGVQGEQGATGLPGVQGPPGRA 756
Score = 50.8 bits (120), Expect = 5e-06
Identities = 82/295 (27%), Positives = 101/295 (34%), Gaps = 88/295 (29%)
Query: 312 GPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAP-D 369
GPP PGP G P P P GTP G GL +G+P
Sbjct: 299 GPPGPPGPAGEPGKPGAPGKP---------GTP-------------GADGLTGPDGSPGS 336
Query: 370 MGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQ 429
+GS G+ E G P G G P + GP G
Sbjct: 337 IGSKGQKG--EPGVP----------------------GSRGFPGRGIPGPPGPPGTAGLP 372
Query: 430 GSLGRASLSGPFG-PGPQGGP----PSRDRRHLGVQIGRVRVPLGSALP-----YP---- 475
G LGR GP G PG +G P P R +G G P +A P YP
Sbjct: 373 GELGRV---GPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCP--NACPPGRSGYPGLPG 427
Query: 476 ------ARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALGETAPTAQ 527
A+ E+ PG + + ++ G G + G +GL R G +
Sbjct: 428 MRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGL-----RGITGIVGDKGE 482
Query: 528 FTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR-----PGWDTPEKGD 575
R + PGP+G GA G R PPG A RG PG P KGD
Sbjct: 483 KGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGP-KGD 536
Score = 44.3 bits (103), Expect = 5e-04
Identities = 76/282 (26%), Positives = 95/282 (33%), Gaps = 42/282 (14%)
Query: 301 PPRLGRA-----PHFNGPPAHPGPGRPSTS-----PCPLPPSLLCLWVESGTP-----RG 345
P LGR P GPP PGP P + PL P+ C SG P RG
Sbjct: 372 PGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNA-CPPGRSGYPGLPGMRG 430
Query: 346 RQSLAEGVKRDGGQGLPDVEGAPDMGSSGE--GAGLEEGSPLRRERAWPPPSLRTPTPGL 403
+ + G QG EG D G GE G LR GL
Sbjct: 431 HKGAKGEIGEPGRQGHKGEEG--DQGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGL 488
Query: 404 T-EGGGTGLPS----KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLG 458
E G GLP + +RGP + G +G+ G + G GP G P D
Sbjct: 489 DGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVD----- 543
Query: 459 VQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSA 518
GR +P G + PPG PG +GV + +P
Sbjct: 544 ---GRDGIP-GMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQ 599
Query: 519 LGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAES 558
+G + Q + PPG G G G+R GP S
Sbjct: 600 MGNSGKPGQ------QGPPGEVGPRGPQGLPGSRGELGPVGS 635
Score = 38.9 bits (89), Expect = 0.019
Identities = 53/192 (27%), Positives = 65/192 (33%), Gaps = 53/192 (27%)
Query: 386 RRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP-G 444
RRE P+ TP+ E G G +GP GP G G + G G G
Sbjct: 248 RRETCHELPARITPSQTTDERGPPG-----EQGPP------GPPGPPGVPGIDGIDGDRG 296
Query: 445 PQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRG 502
P+G GPP P G A + PGA PD G++G
Sbjct: 297 PKGPPGPPG---------------PAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKG 341
Query: 503 VRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----------GAMSAAGTRS 551
+ G G+ P R F R + PPGP G G + G R
Sbjct: 342 -QKGEPGV--PGSRG----------FPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRG 388
Query: 552 PPGPAESARSRG 563
PPGP RG
Sbjct: 389 PPGPPGPPGPRG 400
Score = 38.5 bits (88), Expect = 0.025
Identities = 50/178 (28%), Positives = 62/178 (34%), Gaps = 30/178 (16%)
Query: 343 PRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPG 402
PRG Q G GLP V+G P + + ++ A SL+ P
Sbjct: 734 PRGVQG------EQGATGLPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRP--- 784
Query: 403 LTEGGGTGLPSKQRRG--PSPKTELG--------------GPQGSLGRASLSGPFGPGPQ 446
+ G TGLP + P P E G GP G+LG G G +
Sbjct: 785 --DSGATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGE 842
Query: 447 GGPPSRDRRHLGVQIGRVRVPLGSALPYPAR-SELAPPGARDALS-PDPERPCPGTRG 502
GPP R L IG P ++ R E PPG P P P PG G
Sbjct: 843 RGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGPPGP-PGLPG 899
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 65.9 bits (159), Expect = 1e-10
Identities = 89/310 (28%), Positives = 111/310 (35%), Gaps = 62/310 (20%)
Query: 298 PRSPPRLGRA--PHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKR 355
P P ++G + P GPP GP P P E G P G L +
Sbjct: 351 PGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRG--------ELG-PVGSPGLPGKLGS 401
Query: 356 DGGQGLPDVEGAPDM-GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSK 414
G GLP + G P + G G+ + E P + A E G GLP
Sbjct: 402 LGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGA---SGEEGEAGERGELGDIGLPGP 458
Query: 415 QRRGPSP-KTELGGPQGSLGRASLSGPFG-PGPQG--------------GPPSRD----- 453
+ +P + L GP+GS G + GP G PGP+G GPP R
Sbjct: 459 KGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQH 518
Query: 454 ---------RRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVR 504
+ H ++ P A P R PG P E PG G+R
Sbjct: 519 IKQVCMRVIQEHFAEMAASLKRPDSGATGLPGR-----PGPPGPPGPPGENGFPGQMGIR 573
Query: 505 SGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARS- 561
G G+ P ALG P + R PPG RG G A G PGPA R+
Sbjct: 574 -GLPGI--KGPPGALGLRGPKGDLGEKGERGPPG-RGPNGLPGAIGLPGDPGPASYGRNG 629
Query: 562 ----RGPRPG 567
RGP PG
Sbjct: 630 RDGERGP-PG 638
Score = 52.0 bits (123), Expect = 2e-06
Identities = 81/280 (28%), Positives = 92/280 (32%), Gaps = 66/280 (23%)
Query: 312 GPPAHPGP----GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGA 367
GPP GP G P P P+G L RDG G+P +G
Sbjct: 265 GPPGEAGPKGDRGAEGARGIPGLPG----------PKGDTGLPGVDGRDGIPGMPGTKGE 314
Query: 368 PDMGSSGEGAGLE-----EGSPLRRERAWPPPSLRTP-TPGLTEGGGTGLPSKQRRGPSP 421
P AGL+ G P + A S P PG + G +G P +Q GP
Sbjct: 315 PGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPG--QMGNSGKPGQQ--GPPG 370
Query: 422 KTELGGPQGSLGRASLSGPFG-------------------PGPQGGPPSRDRRHLGVQIG 462
+ GPQG G GP G PGP G P + R G
Sbjct: 371 EVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDR------G 424
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSP-APRSALGE 521
V P G A E G R L D P P G GL P R G
Sbjct: 425 VVGEP-GPKGEQGASGEEGEAGERGELG-DIGLPGPKGSAGNPGEPGLRGPEGSRGLPGV 482
Query: 522 TAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPA 556
P R PPGPRG GA G + PPG A
Sbjct: 483 EGP---------RGPPGPRGVQGEQGATGLPGVQGPPGRA 513
Score = 50.8 bits (120), Expect = 5e-06
Identities = 82/295 (27%), Positives = 101/295 (34%), Gaps = 88/295 (29%)
Query: 312 GPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAP-D 369
GPP PGP G P P P GTP G GL +G+P
Sbjct: 56 GPPGPPGPAGEPGKPGAPGKP---------GTP-------------GADGLTGPDGSPGS 93
Query: 370 MGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQ 429
+GS G+ E G P G G P + GP G
Sbjct: 94 IGSKGQKG--EPGVP----------------------GSRGFPGRGIPGPPGPPGTAGLP 129
Query: 430 GSLGRASLSGPFG-PGPQGGP----PSRDRRHLGVQIGRVRVPLGSALP-----YP---- 475
G LGR GP G PG +G P P R +G G P +A P YP
Sbjct: 130 GELGRV---GPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCP--NACPPGRSGYPGLPG 184
Query: 476 ------ARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALGETAPTAQ 527
A+ E+ PG + + ++ G G + G +GL R G +
Sbjct: 185 MRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGL-----RGITGIVGDKGE 239
Query: 528 FTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR-----PGWDTPEKGD 575
R + PGP+G GA G R PPG A RG PG P KGD
Sbjct: 240 KGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGP-KGD 293
Score = 44.3 bits (103), Expect = 5e-04
Identities = 76/282 (26%), Positives = 95/282 (33%), Gaps = 42/282 (14%)
Query: 301 PPRLGRA-----PHFNGPPAHPGPGRPSTS-----PCPLPPSLLCLWVESGTP-----RG 345
P LGR P GPP PGP P + PL P+ C SG P RG
Sbjct: 129 PGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNA-CPPGRSGYPGLPGMRG 187
Query: 346 RQSLAEGVKRDGGQGLPDVEGAPDMGSSGE--GAGLEEGSPLRRERAWPPPSLRTPTPGL 403
+ + G QG EG D G GE G LR GL
Sbjct: 188 HKGAKGEIGEPGRQGHKGEEG--DQGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGL 245
Query: 404 T-EGGGTGLPS----KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLG 458
E G GLP + +RGP + G +G+ G + G GP G P D
Sbjct: 246 DGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVD----- 300
Query: 459 VQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSA 518
GR +P G + PPG PG +GV + +P
Sbjct: 301 ---GRDGIP-GMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQ 356
Query: 519 LGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAES 558
+G + Q + PPG G G G+R GP S
Sbjct: 357 MGNSGKPGQ------QGPPGEVGPRGPQGLPGSRGELGPVGS 392
Score = 38.5 bits (88), Expect = 0.025
Identities = 50/178 (28%), Positives = 62/178 (34%), Gaps = 30/178 (16%)
Query: 343 PRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPG 402
PRG Q G GLP V+G P + + ++ A SL+ P
Sbjct: 491 PRGVQG------EQGATGLPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRP--- 541
Query: 403 LTEGGGTGLPSKQRRG--PSPKTELG--------------GPQGSLGRASLSGPFGPGPQ 446
+ G TGLP + P P E G GP G+LG G G +
Sbjct: 542 --DSGATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGE 599
Query: 447 GGPPSRDRRHLGVQIGRVRVPLGSALPYPAR-SELAPPGARDALS-PDPERPCPGTRG 502
GPP R L IG P ++ R E PPG P P P PG G
Sbjct: 600 RGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGPPGP-PGLPG 656
Score = 38.1 bits (87), Expect = 0.033
Identities = 45/162 (27%), Positives = 56/162 (34%), Gaps = 42/162 (25%)
Query: 416 RRGPSPKTELGGPQGSLGRASLSGPFGP-GPQG--GPPSRDRRHLGVQIGRVRVPLGSAL 472
+RGP + GP G G + G G GP+G GPP P G
Sbjct: 24 QRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPG---------------PAGEPG 68
Query: 473 PYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRK 532
A + PGA PD G++G + G G+ P R F R
Sbjct: 69 KPGAPGKPGTPGADGLTGPDGSPGSIGSKG-QKGEPGV--PGSRG----------FPGRG 115
Query: 533 VRNPPGPRG-----------GAMSAAGTRSPPGPAESARSRG 563
+ PPGP G G + G R PPGP RG
Sbjct: 116 IPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRG 157
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 63.5 bits (153), Expect = 7e-10
Identities = 104/345 (30%), Positives = 121/345 (35%), Gaps = 63/345 (18%)
Query: 283 GLPILP-PAGHTLRLPPRSP--PRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWV 338
G P LP P G + P P P L P GPP PG G P P P
Sbjct: 773 GSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPG------ 826
Query: 339 ESGTP--RGRQSLA--------EGVKRDGG---QGLPDVEGAP---------------DM 370
E G P G Q +G K D G +G P +G P DM
Sbjct: 827 EDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM 886
Query: 371 GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT-EGGGTGLPSKQRRGPSPKTELGGPQ 429
SG G LE LR R +P P PGL E G G+ S GP+ + G +
Sbjct: 887 EGSGFGGDLEA---LRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 943
Query: 430 GSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP-----LGSALPYPARSELAPPG 484
G G L GP GP + GPP R + +G P G+ P AR E G
Sbjct: 944 GPPGFPGLPGPPGPPGREGPPGRTGQK--GSLGEAGAPGHKGSKGAPGPAGARGESGLAG 1001
Query: 485 ARDALSP-----DPERPCPGTRGVRSGREGLLSP---APRSALGETAPTAQFTFR---KV 533
A P P P PG EG P RSA G P + V
Sbjct: 1002 APGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGV 1061
Query: 534 RNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR-PGWDTPEKGD 575
PG +G GA G PG A +GP+ EKGD
Sbjct: 1062 PGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGD 1106
Score = 56.2 bits (134), Expect = 1e-07
Identities = 91/314 (28%), Positives = 102/314 (32%), Gaps = 65/314 (20%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGPGRPSTSPC---PLPPSLLCLWVESGT--PRGRQSLAEG 352
P P GRA GPP P P PC PL P+ L G P G
Sbjct: 760 PGVPGPPGRA----GPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGT 815
Query: 353 VKRDGGQGLPDVEGAP-DMGSSG-------EGAGLEEGSPLRRERAWPPPSLRTPTPGLT 404
RDG G P +G P D G G G ++G P ER P P PG +
Sbjct: 816 PGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPS 875
Query: 405 -----------EGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG------PGPQG 447
EG G G + RGP GP G G G FG PGP G
Sbjct: 876 FRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAG 935
Query: 448 GPPSRDRRHLGVQIGRVRVPLGSALPYP--ARSELAPPGARDALSPDPERPCPGTRGVRS 505
P GV GR P LP P PPG E PG +G +
Sbjct: 936 LP--------GVP-GREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG 986
Query: 506 GREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESA----RS 561
+P P A GE+ + PGP G G PPGP A
Sbjct: 987 ------APGPAGARGESG---------LAGAPGP-AGPPGPPGPPGPPGPGLPAGFDDME 1030
Query: 562 RGPRPGWDTPEKGD 575
P W T D
Sbjct: 1031 GSGGPFWSTARSAD 1044
Score = 54.7 bits (130), Expect = 3e-07
Identities = 90/309 (29%), Positives = 116/309 (37%), Gaps = 65/309 (21%)
Query: 299 RSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSL-AEGVKRDG 357
R L AP GPP PGP P P P P+ SG P + A+G + G
Sbjct: 994 RGESGLAGAPGPAGPPGPPGPPGP---PGPGLPAGFDDMEGSGGPFWSTARSADGPQ--G 1048
Query: 358 GQGLPDVEGAPDM----GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPS 413
GLP ++G P + G+ GE +G P G GLP
Sbjct: 1049 PPGLPGLKGDPGVPGLPGAKGEVGA--DGVP----------------------GFPGLPG 1084
Query: 414 KQR-RGPS-PKTELG--GPQGSLGRASLSGPFGPGPQGGP------PSRDRRHLGVQIGR 463
++ GP PK + G G +G G+ + P PGP G P +D L V G
Sbjct: 1085 REGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVP-GP 1143
Query: 464 VRVPLGSALPYPA--RSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGE 521
P + P PA + L G R + P E+ PG+ + S G L PA + A GE
Sbjct: 1144 EGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGS--IFSPDGGALGPAQKGAKGE 1201
Query: 522 TAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLS 579
R PPGP G G G PG +G + E GD L
Sbjct: 1202 PG---------FRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKG-----EKGEPGDASLG 1247
Query: 580 FTMQEDVGP 588
F M+ GP
Sbjct: 1248 FGMRGMPGP 1256
Score = 52.0 bits (123), Expect = 2e-06
Identities = 79/279 (28%), Positives = 97/279 (34%), Gaps = 52/279 (18%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAP-DM 370
G P G G+P P PP + E EG R G G P G ++
Sbjct: 1105 GDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEG--RPGFAGFPGPAGPKGNL 1162
Query: 371 GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG 430
GS GE GSP + P S+ +P +GG G K +G + GP G
Sbjct: 1163 GSKGE-----RGSPGPKGEKGEPGSIFSP-----DGGALGPAQKGAKG---EPGFRGPPG 1209
Query: 431 SLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDAL 489
GR G G PG G P + G P ++L + R PPG
Sbjct: 1210 PYGRPGYKGEIGFPGRPGRPGMNGLK------GEKGEPGDASLGFGMRGMPGPPG----- 1258
Query: 490 SPDPERPCPGT---------RGVRSGREGLLS----PAPRSALGET---APTAQFTF--- 530
P P P PGT R G GL P P+ A GE P QF F
Sbjct: 1259 PPGPPGP-PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFL 1317
Query: 531 ---RKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRP 566
+++ G RG A G R PG S P P
Sbjct: 1318 QLEAEMKGEKGDRGDA-GQKGERGEPGGGGFFGSSLPGP 1355
Score = 47.0 bits (110), Expect = 7e-05
Identities = 71/262 (27%), Positives = 88/262 (33%), Gaps = 61/262 (23%)
Query: 363 DVEGAPDMGSSGE-GAGLEEGSPLRRERAW---------PPPSLRTPTPG---------- 402
D EG G+SG+ G+GL + L RE PPP P G
Sbjct: 653 DEEGDDSDGASGDSGSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSE 712
Query: 403 -------LTEGGGTGLPSKQR--------RGPSPKTELGGPQGSLGRASLSGPFGPGPQG 447
+ G LP R P + + GG +G G + GP G +
Sbjct: 713 EVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPG---RA 769
Query: 448 GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE-RPCPGTRGVRSG 506
GPP G +P LP P S L P G P P+ P P R G
Sbjct: 770 GPP-----------GSPCLPGPPGLPCPV-SPLGPAGPALQTVPGPQGPPGPPGRDGTPG 817
Query: 507 REGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGG-AMSAAGTRSPPGPAESARSRGPR 565
R+G P G+ T F GP+G G R PPGP +GP
Sbjct: 818 RDG--EPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGP------QGP- 868
Query: 566 PGWDTPEKGDHLLSFTMQEDVG 587
PG P L+F E G
Sbjct: 869 PGPPGPSFRHDKLTFIDMEGSG 890
Score = 44.3 bits (103), Expect = 5e-04
Identities = 62/242 (25%), Positives = 75/242 (30%), Gaps = 27/242 (11%)
Query: 343 PRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPG 402
P GR + G G P + G G GE G +R P P PG
Sbjct: 1210 PYGRPGYKGEIGFPGRPGRPGMNGLK--GEKGEPGDASLGFGMRGMPGPPGPPGPPGPPG 1267
Query: 403 LTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIG 462
R GP GP G G GP PGP G P D L ++
Sbjct: 1268 TPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGP--PGPPGQFPF-DFLQLEAEMK 1324
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGET 522
+ G A R E G + P P P PG RG G+ P S G+
Sbjct: 1325 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGP-PGPRGY----PGIPGPKGESIRGQP 1379
Query: 523 APTAQ-----FTFRKVRNPPGPRGG------------AMSAAGTRSPPGPAESARSRGPR 565
P + + PPGP G +S G PPGP + G
Sbjct: 1380 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGAS 1439
Query: 566 PG 567
G
Sbjct: 1440 SG 1441
Score = 31.2 bits (69), Expect = 4.0
Identities = 49/174 (28%), Positives = 62/174 (35%), Gaps = 18/174 (10%)
Query: 301 PPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLA--EGVKRDGG 358
PP L GP G P P P L L E +G + A +G + + G
Sbjct: 1284 PPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 1343
Query: 359 QG------LPDVEGAPDMGSSG-EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGL 411
G LP G P G G G +G +R + PP + P PG+ G G
Sbjct: 1344 GGGFFGSSLPGPPGPP--GPRGYPGIPGPKGESIRGQPG--PPGPQGP-PGIGYEGRQGP 1398
Query: 412 PSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 465
P GP GP S+ GP GP GPP GV++ R
Sbjct: 1399 PGPP--GPPGPPSFPGPHRQT--ISVPGPPGPPGPPGPPGTMGASSGVRLWATR 1448
Score = 30.8 bits (68), Expect = 5.2
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 17/75 (22%)
Query: 261 GSSL-GCPRSGAPRMFIVYHVAAGLPILP-PAGHTLRLPP-----RSPPRLGRAPHFNGP 313
GSSL G P PR G P +P P G ++R P + PP +G GP
Sbjct: 1349 GSSLPGPPGPPGPR---------GYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGR-QGP 1398
Query: 314 PAHPGPGRPSTSPCP 328
P PGP P + P P
Sbjct: 1399 PGPPGPPGPPSFPGP 1413
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 63.5 bits (153), Expect = 7e-10
Identities = 104/345 (30%), Positives = 121/345 (35%), Gaps = 63/345 (18%)
Query: 283 GLPILP-PAGHTLRLPPRSP--PRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWV 338
G P LP P G + P P P L P GPP PG G P P P
Sbjct: 358 GSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPG------ 411
Query: 339 ESGTP--RGRQSLA--------EGVKRDGG---QGLPDVEGAP---------------DM 370
E G P G Q +G K D G +G P +G P DM
Sbjct: 412 EDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM 471
Query: 371 GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT-EGGGTGLPSKQRRGPSPKTELGGPQ 429
SG G LE LR R +P P PGL E G G+ S GP+ + G +
Sbjct: 472 EGSGFGGDLEA---LRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 528
Query: 430 GSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP-----LGSALPYPARSELAPPG 484
G G L GP GP + GPP R + +G P G+ P AR E G
Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRTGQK--GSLGEAGAPGHKGSKGAPGPAGARGESGLAG 586
Query: 485 ARDALSP-----DPERPCPGTRGVRSGREGLLSP---APRSALGETAPTAQFTFR---KV 533
A P P P PG EG P RSA G P + V
Sbjct: 587 APGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGV 646
Query: 534 RNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR-PGWDTPEKGD 575
PG +G GA G PG A +GP+ EKGD
Sbjct: 647 PGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGD 691
Score = 56.2 bits (134), Expect = 1e-07
Identities = 91/314 (28%), Positives = 102/314 (32%), Gaps = 65/314 (20%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGPGRPSTSPC---PLPPSLLCLWVESGT--PRGRQSLAEG 352
P P GRA GPP P P PC PL P+ L G P G
Sbjct: 345 PGVPGPPGRA----GPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGT 400
Query: 353 VKRDGGQGLPDVEGAP-DMGSSG-------EGAGLEEGSPLRRERAWPPPSLRTPTPGLT 404
RDG G P +G P D G G G ++G P ER P P PG +
Sbjct: 401 PGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPS 460
Query: 405 -----------EGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG------PGPQG 447
EG G G + RGP GP G G G FG PGP G
Sbjct: 461 FRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAG 520
Query: 448 GPPSRDRRHLGVQIGRVRVPLGSALPYP--ARSELAPPGARDALSPDPERPCPGTRGVRS 505
P GV GR P LP P PPG E PG +G +
Sbjct: 521 LP--------GVP-GREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG 571
Query: 506 GREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESA----RS 561
+P P A GE+ + PGP G G PPGP A
Sbjct: 572 ------APGPAGARGESG---------LAGAPGP-AGPPGPPGPPGPPGPGLPAGFDDME 615
Query: 562 RGPRPGWDTPEKGD 575
P W T D
Sbjct: 616 GSGGPFWSTARSAD 629
Score = 54.7 bits (130), Expect = 3e-07
Identities = 90/309 (29%), Positives = 116/309 (37%), Gaps = 65/309 (21%)
Query: 299 RSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSL-AEGVKRDG 357
R L AP GPP PGP P P P P+ SG P + A+G + G
Sbjct: 579 RGESGLAGAPGPAGPPGPPGPPGP---PGPGLPAGFDDMEGSGGPFWSTARSADGPQ--G 633
Query: 358 GQGLPDVEGAPDM----GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPS 413
GLP ++G P + G+ GE +G P G GLP
Sbjct: 634 PPGLPGLKGDPGVPGLPGAKGEVGA--DGVP----------------------GFPGLPG 669
Query: 414 KQR-RGPS-PKTELG--GPQGSLGRASLSGPFGPGPQGGP------PSRDRRHLGVQIGR 463
++ GP PK + G G +G G+ + P PGP G P +D L V G
Sbjct: 670 REGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVP-GP 728
Query: 464 VRVPLGSALPYPA--RSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGE 521
P + P PA + L G R + P E+ PG+ + S G L PA + A GE
Sbjct: 729 EGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGS--IFSPDGGALGPAQKGAKGE 786
Query: 522 TAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLS 579
R PPGP G G G PG +G + E GD L
Sbjct: 787 PG---------FRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKG-----EKGEPGDASLG 832
Query: 580 FTMQEDVGP 588
F M+ GP
Sbjct: 833 FGMRGMPGP 841
Score = 52.0 bits (123), Expect = 2e-06
Identities = 79/279 (28%), Positives = 97/279 (34%), Gaps = 52/279 (18%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAP-DM 370
G P G G+P P PP + E EG R G G P G ++
Sbjct: 690 GDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEG--RPGFAGFPGPAGPKGNL 747
Query: 371 GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG 430
GS GE GSP + P S+ +P +GG G K +G + GP G
Sbjct: 748 GSKGE-----RGSPGPKGEKGEPGSIFSP-----DGGALGPAQKGAKG---EPGFRGPPG 794
Query: 431 SLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDAL 489
GR G G PG G P + G P ++L + R PPG
Sbjct: 795 PYGRPGYKGEIGFPGRPGRPGMNGLK------GEKGEPGDASLGFGMRGMPGPPG----- 843
Query: 490 SPDPERPCPGT---------RGVRSGREGLLS----PAPRSALGET---APTAQFTF--- 530
P P P PGT R G GL P P+ A GE P QF F
Sbjct: 844 PPGPPGP-PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFL 902
Query: 531 ---RKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRP 566
+++ G RG A G R PG S P P
Sbjct: 903 QLEAEMKGEKGDRGDA-GQKGERGEPGGGGFFGSSLPGP 940
Score = 47.0 bits (110), Expect = 7e-05
Identities = 71/262 (27%), Positives = 88/262 (33%), Gaps = 61/262 (23%)
Query: 363 DVEGAPDMGSSGE-GAGLEEGSPLRRERAW---------PPPSLRTPTPG---------- 402
D EG G+SG+ G+GL + L RE PPP P G
Sbjct: 238 DEEGDDSDGASGDSGSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSE 297
Query: 403 -------LTEGGGTGLPSKQR--------RGPSPKTELGGPQGSLGRASLSGPFGPGPQG 447
+ G LP R P + + GG +G G + GP G +
Sbjct: 298 EVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPG---RA 354
Query: 448 GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE-RPCPGTRGVRSG 506
GPP G +P LP P S L P G P P+ P P R G
Sbjct: 355 GPP-----------GSPCLPGPPGLPCPV-SPLGPAGPALQTVPGPQGPPGPPGRDGTPG 402
Query: 507 REGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGG-AMSAAGTRSPPGPAESARSRGPR 565
R+G P G+ T F GP+G G R PPGP +GP
Sbjct: 403 RDG--EPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGP------QGP- 453
Query: 566 PGWDTPEKGDHLLSFTMQEDVG 587
PG P L+F E G
Sbjct: 454 PGPPGPSFRHDKLTFIDMEGSG 475
Score = 44.3 bits (103), Expect = 5e-04
Identities = 62/242 (25%), Positives = 75/242 (30%), Gaps = 27/242 (11%)
Query: 343 PRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPG 402
P GR + G G P + G G GE G +R P P PG
Sbjct: 795 PYGRPGYKGEIGFPGRPGRPGMNGLK--GEKGEPGDASLGFGMRGMPGPPGPPGPPGPPG 852
Query: 403 LTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIG 462
R GP GP G G GP PGP G P D L ++
Sbjct: 853 TPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGP--PGPPGQFPF-DFLQLEAEMK 909
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGET 522
+ G A R E G + P P P PG RG G+ P S G+
Sbjct: 910 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGP-PGPRGY----PGIPGPKGESIRGQP 964
Query: 523 APTAQ-----FTFRKVRNPPGPRGG------------AMSAAGTRSPPGPAESARSRGPR 565
P + + PPGP G +S G PPGP + G
Sbjct: 965 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGAS 1024
Query: 566 PG 567
G
Sbjct: 1025 SG 1026
Score = 31.2 bits (69), Expect = 4.0
Identities = 49/174 (28%), Positives = 62/174 (35%), Gaps = 18/174 (10%)
Query: 301 PPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLA--EGVKRDGG 358
PP L GP G P P P L L E +G + A +G + + G
Sbjct: 869 PPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 928
Query: 359 QG------LPDVEGAPDMGSSG-EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGL 411
G LP G P G G G +G +R + PP + P PG+ G G
Sbjct: 929 GGGFFGSSLPGPPGPP--GPRGYPGIPGPKGESIRGQPG--PPGPQGP-PGIGYEGRQGP 983
Query: 412 PSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 465
P GP GP S+ GP GP GPP GV++ R
Sbjct: 984 PGPP--GPPGPPSFPGPHRQT--ISVPGPPGPPGPPGPPGTMGASSGVRLWATR 1033
Score = 30.8 bits (68), Expect = 5.2
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 17/75 (22%)
Query: 261 GSSL-GCPRSGAPRMFIVYHVAAGLPILP-PAGHTLRLPP-----RSPPRLGRAPHFNGP 313
GSSL G P PR G P +P P G ++R P + PP +G GP
Sbjct: 934 GSSLPGPPGPPGPR---------GYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGR-QGP 983
Query: 314 PAHPGPGRPSTSPCP 328
P PGP P + P P
Sbjct: 984 PGPPGPPGPPSFPGP 998
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 63.5 bits (153), Expect = 7e-10
Identities = 104/345 (30%), Positives = 121/345 (35%), Gaps = 63/345 (18%)
Query: 283 GLPILP-PAGHTLRLPPRSP--PRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWV 338
G P LP P G + P P P L P GPP PG G P P P
Sbjct: 538 GSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPG------ 591
Query: 339 ESGTP--RGRQSLA--------EGVKRDGG---QGLPDVEGAP---------------DM 370
E G P G Q +G K D G +G P +G P DM
Sbjct: 592 EDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM 651
Query: 371 GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLT-EGGGTGLPSKQRRGPSPKTELGGPQ 429
SG G LE LR R +P P PGL E G G+ S GP+ + G +
Sbjct: 652 EGSGFGGDLEA---LRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 708
Query: 430 GSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP-----LGSALPYPARSELAPPG 484
G G L GP GP + GPP R + +G P G+ P AR E G
Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRTGQK--GSLGEAGAPGHKGSKGAPGPAGARGESGLAG 766
Query: 485 ARDALSP-----DPERPCPGTRGVRSGREGLLSP---APRSALGETAPTAQFTFR---KV 533
A P P P PG EG P RSA G P + V
Sbjct: 767 APGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGV 826
Query: 534 RNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR-PGWDTPEKGD 575
PG +G GA G PG A +GP+ EKGD
Sbjct: 827 PGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGD 871
Score = 56.2 bits (134), Expect = 1e-07
Identities = 91/314 (28%), Positives = 102/314 (32%), Gaps = 65/314 (20%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGPGRPSTSPC---PLPPSLLCLWVESGT--PRGRQSLAEG 352
P P GRA GPP P P PC PL P+ L G P G
Sbjct: 525 PGVPGPPGRA----GPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGT 580
Query: 353 VKRDGGQGLPDVEGAP-DMGSSG-------EGAGLEEGSPLRRERAWPPPSLRTPTPGLT 404
RDG G P +G P D G G G ++G P ER P P PG +
Sbjct: 581 PGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPS 640
Query: 405 -----------EGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG------PGPQG 447
EG G G + RGP GP G G G FG PGP G
Sbjct: 641 FRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAG 700
Query: 448 GPPSRDRRHLGVQIGRVRVPLGSALPYP--ARSELAPPGARDALSPDPERPCPGTRGVRS 505
P GV GR P LP P PPG E PG +G +
Sbjct: 701 LP--------GVP-GREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG 751
Query: 506 GREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESA----RS 561
+P P A GE+ + PGP G G PPGP A
Sbjct: 752 ------APGPAGARGESG---------LAGAPGP-AGPPGPPGPPGPPGPGLPAGFDDME 795
Query: 562 RGPRPGWDTPEKGD 575
P W T D
Sbjct: 796 GSGGPFWSTARSAD 809
Score = 54.7 bits (130), Expect = 3e-07
Identities = 90/309 (29%), Positives = 116/309 (37%), Gaps = 65/309 (21%)
Query: 299 RSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSL-AEGVKRDG 357
R L AP GPP PGP P P P P+ SG P + A+G + G
Sbjct: 759 RGESGLAGAPGPAGPPGPPGPPGP---PGPGLPAGFDDMEGSGGPFWSTARSADGPQ--G 813
Query: 358 GQGLPDVEGAPDM----GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPS 413
GLP ++G P + G+ GE +G P G GLP
Sbjct: 814 PPGLPGLKGDPGVPGLPGAKGEVGA--DGVP----------------------GFPGLPG 849
Query: 414 KQR-RGPS-PKTELG--GPQGSLGRASLSGPFGPGPQGGP------PSRDRRHLGVQIGR 463
++ GP PK + G G +G G+ + P PGP G P +D L V G
Sbjct: 850 REGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVP-GP 908
Query: 464 VRVPLGSALPYPA--RSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGE 521
P + P PA + L G R + P E+ PG+ + S G L PA + A GE
Sbjct: 909 EGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGS--IFSPDGGALGPAQKGAKGE 966
Query: 522 TAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLS 579
R PPGP G G G PG +G + E GD L
Sbjct: 967 PG---------FRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKG-----EKGEPGDASLG 1012
Query: 580 FTMQEDVGP 588
F M+ GP
Sbjct: 1013 FGMRGMPGP 1021
Score = 52.0 bits (123), Expect = 2e-06
Identities = 79/279 (28%), Positives = 97/279 (34%), Gaps = 52/279 (18%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAP-DM 370
G P G G+P P PP + E EG R G G P G ++
Sbjct: 870 GDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEG--RPGFAGFPGPAGPKGNL 927
Query: 371 GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG 430
GS GE GSP + P S+ +P +GG G K +G + GP G
Sbjct: 928 GSKGE-----RGSPGPKGEKGEPGSIFSP-----DGGALGPAQKGAKG---EPGFRGPPG 974
Query: 431 SLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDAL 489
GR G G PG G P + G P ++L + R PPG
Sbjct: 975 PYGRPGYKGEIGFPGRPGRPGMNGLK------GEKGEPGDASLGFGMRGMPGPPG----- 1023
Query: 490 SPDPERPCPGT---------RGVRSGREGLLS----PAPRSALGET---APTAQFTF--- 530
P P P PGT R G GL P P+ A GE P QF F
Sbjct: 1024 PPGPPGP-PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFL 1082
Query: 531 ---RKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRP 566
+++ G RG A G R PG S P P
Sbjct: 1083 QLEAEMKGEKGDRGDA-GQKGERGEPGGGGFFGSSLPGP 1120
Score = 47.0 bits (110), Expect = 7e-05
Identities = 71/262 (27%), Positives = 88/262 (33%), Gaps = 61/262 (23%)
Query: 363 DVEGAPDMGSSGE-GAGLEEGSPLRRERAW---------PPPSLRTPTPG---------- 402
D EG G+SG+ G+GL + L RE PPP P G
Sbjct: 418 DEEGDDSDGASGDSGSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSE 477
Query: 403 -------LTEGGGTGLPSKQR--------RGPSPKTELGGPQGSLGRASLSGPFGPGPQG 447
+ G LP R P + + GG +G G + GP G +
Sbjct: 478 EVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPG---RA 534
Query: 448 GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE-RPCPGTRGVRSG 506
GPP G +P LP P S L P G P P+ P P R G
Sbjct: 535 GPP-----------GSPCLPGPPGLPCPV-SPLGPAGPALQTVPGPQGPPGPPGRDGTPG 582
Query: 507 REGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGG-AMSAAGTRSPPGPAESARSRGPR 565
R+G P G+ T F GP+G G R PPGP +GP
Sbjct: 583 RDG--EPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGP------QGP- 633
Query: 566 PGWDTPEKGDHLLSFTMQEDVG 587
PG P L+F E G
Sbjct: 634 PGPPGPSFRHDKLTFIDMEGSG 655
Score = 44.3 bits (103), Expect = 5e-04
Identities = 62/242 (25%), Positives = 75/242 (30%), Gaps = 27/242 (11%)
Query: 343 PRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPG 402
P GR + G G P + G G GE G +R P P PG
Sbjct: 975 PYGRPGYKGEIGFPGRPGRPGMNGLK--GEKGEPGDASLGFGMRGMPGPPGPPGPPGPPG 1032
Query: 403 LTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIG 462
R GP GP G G GP PGP G P D L ++
Sbjct: 1033 TPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGP--PGPPGQFPF-DFLQLEAEMK 1089
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGET 522
+ G A R E G + P P P PG RG G+ P S G+
Sbjct: 1090 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGP-PGPRGY----PGIPGPKGESIRGQP 1144
Query: 523 APTAQ-----FTFRKVRNPPGPRGG------------AMSAAGTRSPPGPAESARSRGPR 565
P + + PPGP G +S G PPGP + G
Sbjct: 1145 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGAS 1204
Query: 566 PG 567
G
Sbjct: 1205 SG 1206
Score = 31.2 bits (69), Expect = 4.0
Identities = 49/174 (28%), Positives = 62/174 (35%), Gaps = 18/174 (10%)
Query: 301 PPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLA--EGVKRDGG 358
PP L GP G P P P L L E +G + A +G + + G
Sbjct: 1049 PPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 1108
Query: 359 QG------LPDVEGAPDMGSSG-EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGL 411
G LP G P G G G +G +R + PP + P PG+ G G
Sbjct: 1109 GGGFFGSSLPGPPGPP--GPRGYPGIPGPKGESIRGQPG--PPGPQGP-PGIGYEGRQGP 1163
Query: 412 PSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 465
P GP GP S+ GP GP GPP GV++ R
Sbjct: 1164 PGPP--GPPGPPSFPGPHRQT--ISVPGPPGPPGPPGPPGTMGASSGVRLWATR 1213
Score = 30.8 bits (68), Expect = 5.2
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 17/75 (22%)
Query: 261 GSSL-GCPRSGAPRMFIVYHVAAGLPILP-PAGHTLRLPP-----RSPPRLGRAPHFNGP 313
GSSL G P PR G P +P P G ++R P + PP +G GP
Sbjct: 1114 GSSLPGPPGPPGPR---------GYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGR-QGP 1163
Query: 314 PAHPGPGRPSTSPCP 328
P PGP P + P P
Sbjct: 1164 PGPPGPPGPPSFPGP 1178
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 63.2 bits (152), Expect = 9e-10
Identities = 92/312 (29%), Positives = 109/312 (34%), Gaps = 74/312 (23%)
Query: 298 PRSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTP-----RGRQSLAE 351
P PP G+A G HPG PGRP P G P RG L +
Sbjct: 134 PAGPP--GKA----GEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGL-D 186
Query: 352 GVKRDGGQGLPDVEGAPDMGSSGE----GAGLEEGSPLRRERAWPPPSLRT--------- 398
G+K G G P V+G P G+ GE G G P R R P
Sbjct: 187 GLK--GQPGAPGVKGEP--GAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGP 242
Query: 399 --PTPGLTEGGGTGLPSKQRRGPSPKTELG-----------GPQGSLGRASLSGPFGPGP 445
P + G G P P PK E+G GP+G +G LSGP GP
Sbjct: 243 VGPAGPIGSAGPPGFPG----APGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPV--GP 296
Query: 446 QGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS 505
G P + G V LP P R P GA A +
Sbjct: 297 PGNPGANGLTGAKGAAGLPGVAGAPGLPGP-RGIPGPVGAAGA----------------T 339
Query: 506 GREGLL-SPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESA 559
G GL+ P P + GE+ + + PPGP G G AG+ PPGP
Sbjct: 340 GARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLR 399
Query: 560 RSRGPR--PGWD 569
S G R PG D
Sbjct: 400 GSPGSRGLPGAD 411
Score = 60.5 bits (145), Expect = 6e-09
Identities = 80/271 (29%), Positives = 95/271 (35%), Gaps = 51/271 (18%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
GP GP S + P P + S P G DG +G P V GA +G
Sbjct: 586 GPRGERGPPGESGAAGPTGP------IGSRGPSGPPG------PDGNKGEPGVVGA--VG 631
Query: 372 SSGEGAGLEEGSPLRRERAWPP--------PSLRTPTPGLTEGGGTGLPSKQRRGPSPKT 423
++G G P R A P P LR G G P P P
Sbjct: 632 TAGPSG--PSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVG-APGP-- 686
Query: 424 ELGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 482
G G G A +GP GP GP+G P R ++G P G A P A +
Sbjct: 687 --AGATGDRGEAGAAGPAGPAGPRGSPGERG------EVGPAG-PNGFAGPAGAAGQPGA 737
Query: 483 PGARDALSPDPERPCPGTRGV-----RSGREGLLSPAPRSALGETAPTAQFTFRKVRN-- 535
G R A P E G G +G G P P + G+ P F
Sbjct: 738 KGERGAKGPKGENGVVGPTGPVGAAGPAGPNG--PPGPAGSRGDGGPPGMTGFPGAAGRT 795
Query: 536 -PPGPRGGAMSAAGTRSPPGPAESARSRGPR 565
PPGP G +G PPGPA RGPR
Sbjct: 796 GPPGPSG----ISGPPGPPGPAGKEGLRGPR 822
Score = 59.7 bits (143), Expect = 1e-08
Identities = 94/344 (27%), Positives = 116/344 (33%), Gaps = 94/344 (27%)
Query: 312 GPPAHPGP----------GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAE-GVK------ 354
GP PGP G T+ P L +G P G+ E G++
Sbjct: 610 GPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNP 669
Query: 355 -RDGGQGLPDVEGAP-------DMGSSGE----GAGLEEGSPLRRERAWP--PPSLRTPT 400
RDG +G P GAP D G +G G GSP R P P P
Sbjct: 670 GRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPA 729
Query: 401 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGP-----QGGPPSRDR 454
+ G G + +GP + + GP G +G A +GP G PGP GGPP
Sbjct: 730 GAAGQPGAKG--ERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPG--M 785
Query: 455 RHLGVQIGRVRVPLGSAL------PYPARSE--------------------LAPPGARDA 488
GR P S + P PA E + PPG
Sbjct: 786 TGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGE 845
Query: 489 LSPDPERPC---PGTRGVRS--GREGLLS----------PAPRSALGETAPTAQFTFRKV 533
P E PGT G + G G+L P A+GE P +
Sbjct: 846 KGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLG------I 899
Query: 534 RNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 575
PPG RG GA+ + G PG A R PG D P D
Sbjct: 900 AGPPGARGPPGAVGSPGVNGAPGEA----GRDGNPGNDGPPGRD 939
Score = 58.5 bits (140), Expect = 2e-08
Identities = 85/276 (30%), Positives = 98/276 (35%), Gaps = 38/276 (13%)
Query: 311 NGPPAHPGP-----GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVE 365
NG PGP G+ P P PP L SG P G G GLP
Sbjct: 528 NGAQGPPGPQGVQGGKGEQGP-PGPPGFQGLPGPSG-PAGEVGKPGERGLHGEFGLPGPA 585
Query: 366 GAP-DMGSSGEGAGLEEGSPL--RRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPK 422
G + G GE P+ R P P PG+ GT GPS
Sbjct: 586 GPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTA-------GPSGP 638
Query: 423 TELGGPQGSLGRASLSGPFG-PGPQG--GPPSRDRRHLGVQIGRVRVP--LGSALPYPAR 477
+ L G +G+ G G G PG +G G P RD G P +G+ P A
Sbjct: 639 SGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRD--------GARGAPGAVGAPGPAGAT 690
Query: 478 SELAPPGARDALSPDPERPCPGTRGV--RSGREGLLSPAPRS----ALGETAPTAQFTFR 531
+ GA P R PG RG +G G PA + A GE
Sbjct: 691 GDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGEN 750
Query: 532 KVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPG 567
V P GP G A AG PPGPA S GP PG
Sbjct: 751 GVVGPTGPVGAA-GPAGPNGPPGPAGSRGDGGP-PG 784
Score = 56.2 bits (134), Expect = 1e-07
Identities = 76/263 (28%), Positives = 86/263 (32%), Gaps = 31/263 (11%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMG 371
GP GP P+ P P G P G R G G + G P G
Sbjct: 757 GPVGAAGPAGPNGPPGPAGSR------GDGGPPGMTGFPGAAGRTGPPGPSGISGPP--G 808
Query: 372 SSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPS-KQRRGPSPKTELGGPQG 430
G P +E P + P E G G P +GPS + GP G
Sbjct: 809 PPG---------PAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPG 859
Query: 431 SLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP--LGSALPYPARSE---LAPPGA 485
+ G L G PG G P SR R L G V P LG A P AR + PG
Sbjct: 860 TPGPQGLLG--APGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGV 917
Query: 486 RDALSPDPERPCPGTRGV--RSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-- 541
A PG G R G+ G R G P P GP G
Sbjct: 918 NGAPGEAGRDGNPGNDGPPGRDGQPG--HKGERGYPGNIGPVGAAGAPGPHGPVGPAGKH 975
Query: 542 GAMSAAGTRSPPGPAESARSRGP 564
G G P GPA + RGP
Sbjct: 976 GNRGETGPSGPVGPAGAVGPRGP 998
Score = 54.3 bits (129), Expect = 4e-07
Identities = 90/356 (25%), Positives = 112/356 (31%), Gaps = 102/356 (28%)
Query: 295 RLPPRSPPRLGRAPHFNGPPAHPGP--------------------------------GRP 322
R PP P R G GPP PGP G P
Sbjct: 44 RGPPGPPGRDGEDGP-TGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPP 102
Query: 323 STSPCPLPPSLLCLWVESGTP--------------------------RGRQSLAEGVKRD 356
+ P P E G P GR V
Sbjct: 103 GAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQ 162
Query: 357 GGQGLPDVEGAPDM----GSSG-EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGL 411
G +G P G P G +G +G + G+P + P TPG T G GL
Sbjct: 163 GARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAP--GVKGEPGAPGENGTPGQT--GARGL 218
Query: 412 PSKQRRGPSPKTELGGPQGSLGRASLSGPFGP-------GPQGGPPSRDRRHLGVQIGRV 464
P ++ R +P GP G+ G GP GP GP G P + + +IG V
Sbjct: 219 PGERGRVGAP-----GPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKG---EIGAV 270
Query: 465 RVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVR--------SGREGLLSPAPR 516
G A P R E+ PG + P G G + +G GL P PR
Sbjct: 271 G-NAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGL--PGPR 327
Query: 517 SALGETAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARSRGP 564
G R + PGP G G +AG + PPGP+ RGP
Sbjct: 328 GIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGP 383
Score = 50.1 bits (118), Expect = 8e-06
Identities = 76/297 (25%), Positives = 95/297 (31%), Gaps = 48/297 (16%)
Query: 288 PPAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGR 346
PP + PP P G+ GP GP GR PP E G P G
Sbjct: 797 PPGPSGISGPPGPPGPAGKEG-LRGPRGDQGPVGRTGEVGAVGPPGFAG---EKG-PSGE 851
Query: 347 QSLAEGVKRDGGQGL---PDVEGAP----DMGSSGEGAGLEEGSPLRRERAWPPPSLRTP 399
A G QGL P + G P + G G + E PL PP R P
Sbjct: 852 AGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAG---PPGARGP 908
Query: 400 TPGLTEGGGTGLPSKQRR-------GPSPKTELGGPQGSLGRASLSGPFG----PGPQGG 448
+ G G P + R GP + G +G G GP G PGP G
Sbjct: 909 PGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHG- 967
Query: 449 PPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGRE 508
P+G A + R E P G R G +G+R +
Sbjct: 968 ------------------PVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKG 1009
Query: 509 GLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 563
PR G + G +G G++ AG R P GP+ A G
Sbjct: 1010 EPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDG 1066
Score = 45.8 bits (107), Expect = 2e-04
Identities = 91/346 (26%), Positives = 104/346 (30%), Gaps = 104/346 (30%)
Query: 308 PHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEG 366
P G P PGP G P L E G P G + G K + G P
Sbjct: 315 PGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPG-PAGSKG-ESGNKGEPGSAGPQGPP 372
Query: 367 APDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGT-GLPSKQ---------- 415
P G E GS A PP PGL G+ GLP
Sbjct: 373 GPSGEEGKRGPNGEAGS------AGPPGP-----PGLRGSPGSRGLPGADGRAGVMGPPG 421
Query: 416 RRGPSPKTELGGPQGSLGR---------------------ASLSGPFG------------ 442
RG S + GP G GR A GP G
Sbjct: 422 SRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIG 481
Query: 443 -------------PGPQG--GPPSR--DRRHLGVQIGR----------VRVPLGSALPYP 475
PGP+G G P + D+ H G+ R + P G
Sbjct: 482 PAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQG 541
Query: 476 ARSELAPPGARDALS-PDPERPC-----PGTRGVRSGREGLLSPA-------PRSALGET 522
+ E PPG P P P PG RG+ G GL PA P G
Sbjct: 542 GKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLH-GEFGLPGPAGPRGERGPPGESGAA 600
Query: 523 APTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRG 563
PT R PPGP G G + A GT P GP+ RG
Sbjct: 601 GPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERG 646
Score = 37.0 bits (84), Expect = 0.072
Identities = 42/149 (28%), Positives = 52/149 (34%), Gaps = 14/149 (9%)
Query: 416 RRGPS----PKTELG--GPQGSLGRASLSGPFGPGPQGGPPSRD----RRHLGVQIGRVR 465
R+GP+ P+ E G GP G G +GP GP GPP ++ G +G
Sbjct: 31 RKGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGP 90
Query: 466 VPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPT 525
P+G P PG + P E PG G R P G
Sbjct: 91 GPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKP 150
Query: 526 AQFTFRKVRNPPGPRGGAMSAAGTRSPPG 554
+ R V P G RG GT PG
Sbjct: 151 GRPGERGVVGPQGARG----FPGTPGLPG 175
Score = 34.3 bits (77), Expect = 0.47
Identities = 73/265 (27%), Positives = 87/265 (32%), Gaps = 46/265 (17%)
Query: 259 LLGSS--LGCPRSGAPRMFIVYHVAAGLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAH 316
LLG+ LG P S R A G P P G R PP +P NG P
Sbjct: 866 LLGAPGILGLPGSRGERGLPGVAGAVGEP--GPLGIAGPPGARGPPGAVGSPGVNGAPGE 923
Query: 317 PG-PGRPSTSPCPLPPSLLCLWVESGTP--RGRQSLAEGVKRDGGQGLPDVEGAP----- 368
G G P PP G P +G + + G G P G
Sbjct: 924 AGRDGNPGNDG---PPG------RDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGK 974
Query: 369 --DMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPS-KQRRG----PSP 421
+ G +G + + P +R E G GLP K G P
Sbjct: 975 HGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGI 1034
Query: 422 KTELG--GPQGSLGRASLSGPFGPGPQGGPPSRDRR--HLGVQIGRVRVPLGSALPYPAR 477
G G GS+G A GP GP GP +D R H G +G P G P +
Sbjct: 1035 AGHHGDQGAPGSVGPA---GPRGPAGPSGPAGKDGRTGHPGT-VG----PAGIRGPQGHQ 1086
Query: 478 SELAPPGARDALSPDPERPCPGTRG 502
PPG P P P PG G
Sbjct: 1087 GPAGPPG-----PPGPPGP-PGVSG 1105
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 62.0 bits (149), Expect = 2e-09
Identities = 115/400 (28%), Positives = 133/400 (33%), Gaps = 102/400 (25%)
Query: 298 PRSPPRLGRAPHFNGPPAHPG-PGRPSTS-----PCPLPPSLLCLWVESGT--------- 342
PR P + P G P PG PG PS P + L +SG
Sbjct: 154 PRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPG 213
Query: 343 ------PRGRQSLAEGVKRDGGQGLPDVEGAP----DMGSSG----EGAGLEEGSPLRRE 388
PRG Q L G G P G P +GS G G E+G P R
Sbjct: 214 SVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNG 273
Query: 389 RAWPPPSLRTPTPGLTE-GGGTGLPS-KQRRG----PSPKTELGGPQGSLGRASLSGPFG 442
P +PG G GLP K RG PK E+G P GS G A +GP G
Sbjct: 274 N--PGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAP-GSKGEAGPTGPMG 330
Query: 443 P----GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCP 498
GP+G P R R LG P G+ A PG L P
Sbjct: 331 AMGPLGPRGMPGERGR--LG--------PQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFP 380
Query: 499 GTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPP 553
G G++ G G P A G P Q R PPGP G GA+ GT
Sbjct: 381 GNPGMK-GEAG-----PTGARGPEGPQGQ---RGETGPPGPVGSPGLPGAIGTDGTPGAK 431
Query: 554 GPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEDVCVVTEYLWEGNSDPKVG 613
GP S + GP PG P S Q GP +
Sbjct: 432 GPTGSPGTSGP-PGSAGPPG-----SPGPQGSTGPQGIRGQ------------------- 466
Query: 614 SSDPVIPGTKADKKTK-----------MGPMSEEDKRERR 642
DP +PG K + K +GP EE KR R
Sbjct: 467 PGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPR 506
Score = 58.9 bits (141), Expect = 2e-08
Identities = 92/313 (29%), Positives = 113/313 (36%), Gaps = 48/313 (15%)
Query: 357 GGQGLPDVEGAP-DMGSSGE----GAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGT-G 410
G G+P G P + G GE GA EG +R PP + +P GL GT G
Sbjct: 369 GPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSP--GLPGAIGTDG 426
Query: 411 LPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP-GPQG--GPPSRDRRHLGVQIGRVRV- 466
P +GP+ GP GS G GP G GPQG G P GV +
Sbjct: 427 TPGA--KGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDP----GVPGFKGEAG 480
Query: 467 PLGSALPYPARSELAPPGARDALSP--DP----------ERPCPGTRGVRSGREGLLSPA 514
P G P+ + + PPG P DP ER PG RG G +GL P
Sbjct: 481 PKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGF-PGSDGL--PG 537
Query: 515 PRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP--RPGWDT 570
P+ A GE P + + PG G G A G PG GP PG D
Sbjct: 538 PKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDG 597
Query: 571 PEKGDHLLSFTMQEDV----GPLSFSSEDV-------CVVTEYLWEGNSDPKVGSSDPVI 619
+ Q GP S + V D +VG S PV
Sbjct: 598 RPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVG 657
Query: 620 PGTKADKKTKMGP 632
P A ++ + GP
Sbjct: 658 PPGLAGERGEQGP 670
Score = 58.9 bits (141), Expect = 2e-08
Identities = 82/295 (27%), Positives = 104/295 (35%), Gaps = 66/295 (22%)
Query: 298 PRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDG 357
P P L GPP G P ++ PP P G A + G
Sbjct: 889 PNGVPGLKGGRGTQGPPG--ATGFPGSAGRVGPPG----------PAGAPGPAGPLGEPG 936
Query: 358 GQGLPDVEGAP-------DMGSSGEGAGL-EEGSPLRRERAWPPPSLRTPTPGLTEG--G 407
+G P + G P D G +G G ++G P E P P P P T G G
Sbjct: 937 KEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDP--GEDGQPGPD-GPPGPAGTTGQRG 993
Query: 408 GTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG----PGPQGGPPSRDRRHLGVQIGR 463
G+P + RG L GP G+ G+ +G G PGP G P S
Sbjct: 994 IVGMPGQ--RGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNG---------- 1041
Query: 464 VRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETA 523
P+G P PG A+ +R PG G+ + +P P A G+
Sbjct: 1042 ---PVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAG 1098
Query: 524 PTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDH 576
R PG RG G AG R PGP +GPR +KGDH
Sbjct: 1099 Q---------RGDPGSRGPIGPPGRAGKRGLPGP------QGPR-----GDKGDH 1133
Score = 57.8 bits (138), Expect = 4e-08
Identities = 98/344 (28%), Positives = 123/344 (35%), Gaps = 57/344 (16%)
Query: 297 PPRSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGT-----PRGRQSLA 350
PP P G P NG P G G P P P L L G P+G A
Sbjct: 259 PPGKPGEDGE-PGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVG-A 316
Query: 351 EGVKRDGGQGLPDVEGAP--DMGSSGEGAGL-EEGSPLRRERAWPPPSLRTPTPGLTEGG 407
G K + G P P G GE L +G+P +R A P P L G
Sbjct: 317 PGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRG-AHGMPGKPGPMGPLGIPG 375
Query: 408 GTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRV 466
+G P +G + T GP+G G+ +GP PGP G P L IG
Sbjct: 376 SSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGP--PGPVGSP------GLPGAIGTDGT 427
Query: 467 PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTA 526
P G+ P + PPG+ + G +G+R G+ G P GE P
Sbjct: 428 P-GAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIR-GQPG--DPGVPGFKGEAGPKG 483
Query: 527 QFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRGPR--PGWD--TPEKGDHL 577
+ ++ P GP G G GT PPGP + G R PG D KG
Sbjct: 484 EPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKG--- 540
Query: 578 LSFTMQEDVGPLSFSSEDVCVVTEYLWEGNSDPKVGSSDPVIPG 621
Q + GP+ G+S PK DP PG
Sbjct: 541 ----AQGERGPV----------------GSSGPKGSQGDPGRPG 564
Score = 56.2 bits (134), Expect = 1e-07
Identities = 85/280 (30%), Positives = 100/280 (35%), Gaps = 32/280 (11%)
Query: 298 PRSPPRLGRA--PHFNGPPAHPGPGRPSTSPCPL-PPSLLCLWVESGTP--RGRQSLAEG 352
P P G A P G P G PS P+ PP L E G P G Q L
Sbjct: 626 PGKPGEAGNAGVPGQRGAPGKDGEVGPSG---PVGPPGLAGERGEQGPPGPTGFQGLPGP 682
Query: 353 VKRDGGQGLPDVEGAP-DMGSSGE-GAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTG 410
G G P +G P D G+ G G E G+P ER P + G+ G G
Sbjct: 683 PGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNP--GERGEPGITGLPGEKGMAGGHGPD 740
Query: 411 LPSKQRRGPSPKTELGGP---QGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRV 466
P K GPS GP QG G ++G GP G +GG + G +
Sbjct: 741 GP-KGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGL 799
Query: 467 P--LGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAP 524
P LG P E PG R + P R PG+RG P A+G P
Sbjct: 800 PGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRG---------ENGPTGAVGFAGP 850
Query: 525 TAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGP 564
V+ PG G G PGP A S GP
Sbjct: 851 QGPDGQPGVKGEPGEPG----QKGDAGSPGPQGLAGSPGP 886
Score = 55.5 bits (132), Expect = 2e-07
Identities = 84/281 (29%), Positives = 105/281 (37%), Gaps = 66/281 (23%)
Query: 283 GLPILP-PAGHTLRLPP------RSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLC 335
G+P LP PAG ++ P + PP P NGP PGP P+ +
Sbjct: 1005 GMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGN---------- 1054
Query: 336 LWVESGTPRGRQSLAEGVKRDGGQ----GLPDVEGAPD----MGSSGEGAGLEEGSPLRR 387
GTP GR A G + D G GLP +GAP +G+ G+ + G P R
Sbjct: 1055 ----DGTP-GRDG-AVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAG--QRGDPGSR 1106
Query: 388 ERAWPP--------PSLRTPTPGLTEGGGTG-LPSKQRRG-------PSPKTELGGPQGS 431
PP P + P + G G K RG P P GP G
Sbjct: 1107 GPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPP----GPNGE 1162
Query: 432 LGRASLSGPFGP-GPQG--GPPSRDRR--HLG-VQIGRVRVPLGSALPYPARSELAPPGA 485
G A + GPFGP GP G GP ++ LG + VR +G A P E PPG
Sbjct: 1163 QGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPG- 1221
Query: 486 RDALSPDPERPCPGTRGVRSGR--EGLLSPAPRSALGETAP 524
P P G G E + P P + AP
Sbjct: 1222 ----PPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAP 1258
Score = 55.1 bits (131), Expect = 3e-07
Identities = 97/360 (26%), Positives = 117/360 (32%), Gaps = 104/360 (28%)
Query: 285 PILPPAGHTLRLPPRSPPRLGR--------APHFNGPPAHPGPGRPSTSPCPLPPSLLCL 336
PI PP R P P +G AP G P G P + P
Sbjct: 493 PIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGP----- 547
Query: 337 WVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPD----MGSSGE----GAGLEEGSP---- 384
V S P+G Q R G GLP G G G+ GA E+G P
Sbjct: 548 -VGSSGPKGSQG---DPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPG 603
Query: 385 ---LRRE---RAWPPPSLRTPTPGLT-EGGGTGLPSKQRRGPSPKTELG----------- 426
+R + P P + PG E G G+P QR P E+G
Sbjct: 604 SIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPG-QRGAPGKDGEVGPSGPVGPPGLA 662
Query: 427 ------GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL 480
GP G G L GP GP +GG P G VP
Sbjct: 663 GERGEQGPPGPTGFQGLPGPPGPPGEGGKP-----------GDQGVP------------- 698
Query: 481 APPGARDALSPDPERPCPGTRGVRS-----GREGLL----------SPAPRSALGETAPT 525
PGA L P ER PG RG G +G+ SP P G+T P
Sbjct: 699 GDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPP 758
Query: 526 AQFTF---RKVRNPPGPRGGAMSAAGTRSPPGPAESARSRG-------PRPGWDTPEKGD 575
R + PGP+G G + G A + +RG P P T EKG+
Sbjct: 759 GLQGMPGERGIAGTPGPKGD-RGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGE 817
Score = 46.2 bits (108), Expect = 1e-04
Identities = 73/265 (27%), Positives = 86/265 (32%), Gaps = 49/265 (18%)
Query: 305 GRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDV 364
G P G PGP P S P E G P+GR DG G+P
Sbjct: 119 GLVPVVTGIRGRPGPAGPPGSQGPRG--------ERG-PKGRPGPRGPQGIDGEPGVPGQ 169
Query: 365 EGAPDMGSSGEGAGLEEGS-PLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKT 423
GAP G + S P + A GL E G G G
Sbjct: 170 PGAPGPPGHPSHPGPDGLSRPFSAQMA-----------GLDEKSGLGSQVGLMPGSVGPV 218
Query: 424 ELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP 483
GPQG G+ +GP GP + G P P+G P +R PP
Sbjct: 219 GPRGPQGLQGQQGGAGPTGPPGEPGDPG---------------PMG---PIGSRGPEGPP 260
Query: 484 GARDALSPDPERPCPGTRGVRSGREGLL-SPAPRSALGETAPTAQFTFRKVRNPPGPRG- 541
G D E PG G G G SP R G R + GP+G
Sbjct: 261 GKP---GEDGE---PGRNG-NPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGE 313
Query: 542 -GAMSAAGTRSPPGPAESARSRGPR 565
GA + G P GP + GPR
Sbjct: 314 VGAPGSKGEAGPTGPMGAMGPLGPR 338
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 62.0 bits (149), Expect = 2e-09
Identities = 81/291 (27%), Positives = 104/291 (35%), Gaps = 85/291 (29%)
Query: 308 PHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEG 366
P F GP PGP G+ P PP P+G + G GLP G
Sbjct: 62 PGFPGPEGPPGPRGQKGDDGIPGPPG----------PKGIR---------GPPGLPGFPG 102
Query: 367 APDM-GSSG-EGAGLEEGSP----LRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRR-GP 419
P + G G +GA +G P + ER +P G G P Q GP
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFP--------------GSPGFPGLQGPPGP 148
Query: 420 SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
+ G GS+ +SL GP G GPP G+Q +P + +P P
Sbjct: 149 PGIPGMKGEPGSIIMSSLPGPKGNPGYPGPP-------GIQ----GLPGPTGIPGP---- 193
Query: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
+ PPG + P PG +G GL P+ GE ++ PPGP
Sbjct: 194 IGPPGPPGLMGPPGPPGLPGPKG----NMGLNFQGPKGEKGEQG---------LQGPPGP 240
Query: 540 RG---------------GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 575
G G G R PPGP GP PG + EKG+
Sbjct: 241 PGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGP-PGGEKGEKGE 290
Score = 52.8 bits (125), Expect = 1e-06
Identities = 81/290 (27%), Positives = 104/290 (35%), Gaps = 52/290 (17%)
Query: 311 NGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTP--RGRQSLAEGVKRDGGQGLPDVEGA 367
+GPP PG PG P PP L G P +G + A G G+P GA
Sbjct: 490 SGPPGQPGLPGLPG------PPGSL------GFPGQKGEKGQAGATGPKGLPGIPGAPGA 537
Query: 368 PDM-GSSGEGAGL-----------EEGSP-LRRERAWPPPSLRTPTPGLT--EGGGTGLP 412
P GS GE + E GSP P + PGL +G G+
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIT 597
Query: 413 SKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP----- 467
K RGP L G G++G GP G GP G + + + G+ +P
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGP---MGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGD 654
Query: 468 LGSALPYPARSELAPPGARD---ALSPDPERP-CPGTRGV--RSGREGLLSPAPRSALGE 521
G + P + L RD L DP P PG G+ G G+ +G
Sbjct: 655 PGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGI------PGIGL 708
Query: 522 TAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTP 571
P F + PPG G G PPGP +G PG+ P
Sbjct: 709 PGPPGPKGFPGIPGPPG-APGTPGRIGLEGPPGPPGFPGPKG-EPGFALP 756
Score = 51.2 bits (121), Expect = 4e-06
Identities = 100/359 (27%), Positives = 113/359 (31%), Gaps = 86/359 (23%)
Query: 283 GLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESG 341
GLP LP + P PP G +PG PG P P ++
Sbjct: 609 GLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDP---------GQTI 659
Query: 342 TPRGRQSLAEGVKRDGGQGLPDVEGAPDM-------GSSGE----GAGLE---------- 380
T G+ L RDG GLP G P GS GE G GL
Sbjct: 660 TQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPG 719
Query: 381 -------EGSPLRRERAWPPPSLRTPTPGLTEG-------GGTGLPS-KQRRGPSPKTEL 425
G+P R PP P P G G GLP K GP
Sbjct: 720 IPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGF 779
Query: 426 GGPQGSLGRASLSGPFGP----GPQG-----GPPSRDRRHLGVQ--------IGRVRVPL 468
GP G GR L G GP GP G GPP +GVQ G + P
Sbjct: 780 PGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLP--GIGVQGPPGPPGIPGPIGQPG 837
Query: 469 GSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS-----GREGLLSPAPRSALGETA 523
+P + + PPG D P ER PG G G GL P A G
Sbjct: 838 LHGIP-GEKGDPGPPGL-DVPGPPGERGSPGIPGAPGPIGPPGSPGL--PGKAGASGFPG 893
Query: 524 PTAQFTFRKVRNPPGPRG-----------GAMSAAGTRSPPGPAESARSRGPRPGWDTP 571
+ PPGP G G G PGP S+G PG P
Sbjct: 894 TKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKG-EPGLPGP 951
Score = 50.1 bits (118), Expect = 8e-06
Identities = 89/308 (28%), Positives = 102/308 (33%), Gaps = 38/308 (12%)
Query: 283 GLPILP----PAGHTLRLPPRSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLW 337
GLP +P P G+ P L P GPP G PG P PP L
Sbjct: 970 GLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTI 1029
Query: 338 VESGTPRGRQSLAEGVKRDGGQGLPDVEGAP----DMGSSG---------EGAGLEEGSP 384
+ G P G Q + G G P G P D G G G E G P
Sbjct: 1030 GDMGFP-GPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLP 1088
Query: 385 LRRERAWPPPSLRTP-TPGL--TEG--GGTGLPS-KQRRGPSPKTELGGPQGSLGRASLS 438
S+ P PGL T G G GLP GP + GP G+ G
Sbjct: 1089 GYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEP 1148
Query: 439 GPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCP 498
GP G G G P G P +P PA + PG +P P P
Sbjct: 1149 GPVGGGGHPGQPGPP--------GEKGKPGQDGIPGPA-GQKGEPGQPGFGNPGPP-GLP 1198
Query: 499 GTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSA-AGTRSPPGPA 556
G G + G GL P G F V+ PPGP G A G + PGP
Sbjct: 1199 GLSG-QKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQ 1257
Query: 557 ESARSRGP 564
GP
Sbjct: 1258 GPPGRPGP 1265
Score = 49.7 bits (117), Expect = 1e-05
Identities = 87/306 (28%), Positives = 109/306 (35%), Gaps = 61/306 (19%)
Query: 283 GLPILPPAGHTLRLP-------PRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPP 331
GLP P A LP P P + P G P PGP G P P PP
Sbjct: 1107 GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQ---PGPP 1163
Query: 332 SLLCLWVESGTPRGRQSLA--EGVKRDGGQ---GLPDVEGAPDM-GSSGEGA--GLEEGS 383
E G P G+ + G K + GQ G P G P + G G+G G+
Sbjct: 1164 G------EKGKP-GQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNP 1216
Query: 384 PLRRERAWPP----PSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG 439
L + P P ++ P G G P GP GPQG GR +G
Sbjct: 1217 GLPGPKGEPGFHGFPGVQGPP------GPPGSPGPALEGPKGNP---GPQGPPGRPGPTG 1267
Query: 440 PFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERP-- 496
G PGP+G P + + G P LP + + PPG L +P RP
Sbjct: 1268 FQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLP-GLKGDQGPPG----LQGNPGRPGL 1322
Query: 497 -----CPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNP---PGPRGGAMSAAG 548
PG GV G G+ P+ G P + P PGP G ++ G
Sbjct: 1323 NGMKGDPGLPGV-PGFPGMKGPS--GVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKG 1379
Query: 549 TRSPPG 554
PPG
Sbjct: 1380 DAGPPG 1385
Score = 48.1 bits (113), Expect = 3e-05
Identities = 82/268 (30%), Positives = 96/268 (35%), Gaps = 43/268 (16%)
Query: 298 PRSPPRL---GRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGV 353
P PP L G G P PG PG P PP L G P GR L G+
Sbjct: 1274 PEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGL------QGNP-GRPGL-NGM 1325
Query: 354 KRDGGQGLPDVEGAPDM-GSSG-EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGL 411
K G GLP V G P M G SG G+ EG P PP PGL G +
Sbjct: 1326 K--GDPGLPGVPGFPGMKGPSGVPGSAGPEGEP----GLIGPPG----PPGLPGPSGQSI 1375
Query: 412 PSKQRRGP-----SPKTE-LGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 465
K GP P + L GPQG G +GP G + G P D G + G
Sbjct: 1376 IIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFD--GAGGRKGDPG 1433
Query: 466 VPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSG----REGLLSPAPRSALGE 521
+P P L P D L P PGT V G R + AP+ G
Sbjct: 1434 LP-----GQPGTRGLDGPPGPDGLQGPPGP--PGTSSVAHGFLITRHSQTTDAPQCPQGT 1486
Query: 522 TAPTAQFTFRKVRNPPGPRGGAMSAAGT 549
F+ V+ G + AG+
Sbjct: 1487 LQVYEGFSLLYVQGNKRAHGQDLGTAGS 1514
Score = 45.8 bits (107), Expect = 2e-04
Identities = 74/284 (26%), Positives = 91/284 (32%), Gaps = 102/284 (35%)
Query: 299 RSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTP--RGRQSLAEGVKRD 356
R PP P GPP PG + E G P RG+ +D
Sbjct: 266 RGPPG---PPGIRGPPGPPGGEKGEKG-------------EQGEPGKRGKPG------KD 303
Query: 357 GGQGLPDVEGAP-DMGSSGEGAGLEEGSPLRRERAWPP--PSLRTPTPG----LTEGGGT 409
G G P + G P D G GE +G ++ PP P L P PG + E G
Sbjct: 304 GENGQPGIPGLPGDPGYPGEPG--RDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNI 361
Query: 410 GLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG----GPPSRDRRHLGVQIGRV 464
GLP L G +G G + GP G PGP G GPP
Sbjct: 362 GLPG-----------LPGEKGERGFPGIQGPPGLPGPPGAAVMGPPG------------- 397
Query: 465 RVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALGET 522
PPG PG RG + G G+ P P G+
Sbjct: 398 -----------------PPGF------------PGERGQKGDEGPPGISIPGPPGLDGQP 428
Query: 523 APTAQFTFRKVRNPPGPRGGAMSAAG---TRSPPGPAESARSRG 563
+ PPGP G + + PPGP S +G
Sbjct: 429 GAPG------LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKG 466
Score = 42.4 bits (98), Expect = 0.002
Identities = 81/290 (27%), Positives = 99/290 (34%), Gaps = 75/290 (25%)
Query: 283 GLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGT 342
G+ + P G PP P +G+ P +G P G P P PP E G+
Sbjct: 817 GIGVQGPPG-----PPGIPGPIGQ-PGLHGIPGEKGDPGPPGLDVPGPPG------ERGS 864
Query: 343 PRGRQSLAEGVKRDGGQGLPDVEGAPDM-GSSGEGAGLEEGSPLRRERAWPPPSLRTP-- 399
P G + G GLP GA G+ GE + G P PP L P
Sbjct: 865 P-GIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMM--GPP------GPPGPLGIPGR 915
Query: 400 --TPGLTEGGGT----GLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRD 453
PGL G GLP GP+ G +GS G L GP PGP D
Sbjct: 916 SGVPGLKGDDGLQGQPGLP-----GPT------GEKGSKGEPGLPGP--PGPM------D 956
Query: 454 RRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLL 511
LG + + E PG P + PG G SG+ GL
Sbjct: 957 PNLLGSK--------------GEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGL- 1001
Query: 512 SPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPA 556
P P G Q + PPG +G G G PPGP+
Sbjct: 1002 -PGPPGPKGNPGLPGQ---PGLIGPPGLKGTIGDMGFPGPQGVEGPPGPS 1047
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 62.0 bits (149), Expect = 2e-09
Identities = 81/291 (27%), Positives = 104/291 (35%), Gaps = 85/291 (29%)
Query: 308 PHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEG 366
P F GP PGP G+ P PP P+G + G GLP G
Sbjct: 62 PGFPGPEGPPGPRGQKGDDGIPGPPG----------PKGIR---------GPPGLPGFPG 102
Query: 367 APDM-GSSG-EGAGLEEGSP----LRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRR-GP 419
P + G G +GA +G P + ER +P G G P Q GP
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFP--------------GSPGFPGLQGPPGP 148
Query: 420 SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
+ G GS+ +SL GP G GPP G+Q +P + +P P
Sbjct: 149 PGIPGMKGEPGSIIMSSLPGPKGNPGYPGPP-------GIQ----GLPGPTGIPGP---- 193
Query: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
+ PPG + P PG +G GL P+ GE ++ PPGP
Sbjct: 194 IGPPGPPGLMGPPGPPGLPGPKG----NMGLNFQGPKGEKGEQG---------LQGPPGP 240
Query: 540 RG---------------GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 575
G G G R PPGP GP PG + EKG+
Sbjct: 241 PGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGP-PGGEKGEKGE 290
Score = 52.8 bits (125), Expect = 1e-06
Identities = 81/290 (27%), Positives = 104/290 (35%), Gaps = 52/290 (17%)
Query: 311 NGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTP--RGRQSLAEGVKRDGGQGLPDVEGA 367
+GPP PG PG P PP L G P +G + A G G+P GA
Sbjct: 490 SGPPGQPGLPGLPG------PPGSL------GFPGQKGEKGQAGATGPKGLPGIPGAPGA 537
Query: 368 PDM-GSSGEGAGL-----------EEGSP-LRRERAWPPPSLRTPTPGLT--EGGGTGLP 412
P GS GE + E GSP P + PGL +G G+
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIT 597
Query: 413 SKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP----- 467
K RGP L G G++G GP G GP G + + + G+ +P
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGP---MGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGD 654
Query: 468 LGSALPYPARSELAPPGARD---ALSPDPERP-CPGTRGV--RSGREGLLSPAPRSALGE 521
G + P + L RD L DP P PG G+ G G+ +G
Sbjct: 655 PGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGI------PGIGL 708
Query: 522 TAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTP 571
P F + PPG G G PPGP +G PG+ P
Sbjct: 709 PGPPGPKGFPGIPGPPG-APGTPGRIGLEGPPGPPGFPGPKG-EPGFALP 756
Score = 51.2 bits (121), Expect = 4e-06
Identities = 100/359 (27%), Positives = 113/359 (31%), Gaps = 86/359 (23%)
Query: 283 GLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESG 341
GLP LP + P PP G +PG PG P P ++
Sbjct: 609 GLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDP---------GQTI 659
Query: 342 TPRGRQSLAEGVKRDGGQGLPDVEGAPDM-------GSSGE----GAGLE---------- 380
T G+ L RDG GLP G P GS GE G GL
Sbjct: 660 TQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPG 719
Query: 381 -------EGSPLRRERAWPPPSLRTPTPGLTEG-------GGTGLPS-KQRRGPSPKTEL 425
G+P R PP P P G G GLP K GP
Sbjct: 720 IPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGF 779
Query: 426 GGPQGSLGRASLSGPFGP----GPQG-----GPPSRDRRHLGVQ--------IGRVRVPL 468
GP G GR L G GP GP G GPP +GVQ G + P
Sbjct: 780 PGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLP--GIGVQGPPGPPGIPGPIGQPG 837
Query: 469 GSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS-----GREGLLSPAPRSALGETA 523
+P + + PPG D P ER PG G G GL P A G
Sbjct: 838 LHGIP-GEKGDPGPPGL-DVPGPPGERGSPGIPGAPGPIGPPGSPGL--PGKAGASGFPG 893
Query: 524 PTAQFTFRKVRNPPGPRG-----------GAMSAAGTRSPPGPAESARSRGPRPGWDTP 571
+ PPGP G G G PGP S+G PG P
Sbjct: 894 TKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKG-EPGLPGP 951
Score = 48.5 bits (114), Expect = 2e-05
Identities = 91/322 (28%), Positives = 110/322 (34%), Gaps = 66/322 (20%)
Query: 283 GLPILPPAGHTLRLP--PRSPPRLGRA--PHFNGPPAHPG----PGRPSTSPCPLPPSLL 334
GLP LP LP P +P G P G P PG PG P P PP
Sbjct: 1074 GLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPK 1133
Query: 335 CLWVESGTPR--GRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWP 392
+ G P G G G G P +G P AG ++G P + P
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAG-QKGEPGQPGFGNP 1192
Query: 393 -PPSLRTPTPGLT----EGGGTGLPSKQRRGPSPKTELG--------------------- 426
PP L PGL+ +GG G+P P PK E G
Sbjct: 1193 GPPGL----PGLSGQKGDGGLPGIPGNPGL-PGPKGEPGFHGFPGVQGPPGPPGSPGPAL 1247
Query: 427 -------GPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVP--LGSALPYPA 476
GPQG GR L GP G PG G + + Q G +P G P
Sbjct: 1248 EGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGL 1307
Query: 477 RSELAPPGARDALSPDPERP-CPGTRGVR--SGREGLLSPAPRSAL-GETAPTAQFTFRK 532
+ PG + + DP P PG G++ SG G P L G P
Sbjct: 1308 QGNPGRPGL-NGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGL----- 1361
Query: 533 VRNPPGPRGGAMSAAGTRSPPG 554
PGP G ++ G PPG
Sbjct: 1362 ----PGPSGQSIIIKGDAGPPG 1379
Score = 48.1 bits (113), Expect = 3e-05
Identities = 82/268 (30%), Positives = 96/268 (35%), Gaps = 43/268 (16%)
Query: 298 PRSPPRL---GRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGV 353
P PP L G G P PG PG P PP L G P GR L G+
Sbjct: 1268 PEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGL------QGNP-GRPGL-NGM 1319
Query: 354 KRDGGQGLPDVEGAPDM-GSSG-EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGL 411
K G GLP V G P M G SG G+ EG P PP PGL G +
Sbjct: 1320 K--GDPGLPGVPGFPGMKGPSGVPGSAGPEGEP----GLIGPPG----PPGLPGPSGQSI 1369
Query: 412 PSKQRRGP-----SPKTE-LGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 465
K GP P + L GPQG G +GP G + G P D G + G
Sbjct: 1370 IIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFD--GAGGRKGDPG 1427
Query: 466 VPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSG----REGLLSPAPRSALGE 521
+P P L P D L P PGT V G R + AP+ G
Sbjct: 1428 LP-----GQPGTRGLDGPPGPDGLQGPPGP--PGTSSVAHGFLITRHSQTTDAPQCPQGT 1480
Query: 522 TAPTAQFTFRKVRNPPGPRGGAMSAAGT 549
F+ V+ G + AG+
Sbjct: 1481 LQVYEGFSLLYVQGNKRAHGQDLGTAGS 1508
Score = 47.0 bits (110), Expect = 7e-05
Identities = 90/305 (29%), Positives = 110/305 (36%), Gaps = 49/305 (16%)
Query: 294 LRLPPRSP-PRLGRAPHFNGPPAHPGP-------GRPSTS--PCPLPPSLLCLWVESGTP 343
L +P RS P L G P PGP G P P P+ P+LL E G P
Sbjct: 910 LGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEP 969
Query: 344 RGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGE-------GAGLEEGSPLRRERAWPPPSL 396
G + G QGLP G P G SG+ G G P + PP
Sbjct: 970 -GLPGIPGVSGPKGYQGLPGDPGQP--GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLK 1026
Query: 397 RT------PTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGG 448
T P P EG G +G+P + P + G +G G +S+ P PGP+G
Sbjct: 1027 GTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQK--GDKGDPGISSIGLPGLPGPKGE 1084
Query: 449 PPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERP-CPGTRGVRSGR 507
P G V P LP PGA+ P P PGT G G
Sbjct: 1085 PGLPGYPGNPGIKGSVGDPGLPGLP-------GTPGAKG----QPGLPGFPGTPG-PPGP 1132
Query: 508 EGLLSPAPRSAL-GETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRP 566
+G+ P L GE P PPG +G G PGPA G +P
Sbjct: 1133 KGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKG----KPGQDGIPGPAGQKGEPG-QP 1187
Query: 567 GWDTP 571
G+ P
Sbjct: 1188 GFGNP 1192
Score = 46.6 bits (109), Expect = 9e-05
Identities = 100/389 (25%), Positives = 123/389 (31%), Gaps = 102/389 (26%)
Query: 285 PILPPAGHTLRLPPRSP----PRLGRAPHFNGPPAHPG-------PGRPST-SPCPLPPS 332
PI PP L PP P P+ +F GP G PG P S P
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPID 252
Query: 333 LLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRR----- 387
+ + G P R G G P + G P +G E+G P +R
Sbjct: 253 VEFQKGDQGLPGDR----------GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGK 302
Query: 388 --ERAWP-------------------------------PPSLRTPTPG----LTEGGGTG 410
E P PP L P PG + E G G
Sbjct: 303 DGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIG 362
Query: 411 LPSKQRRGPSPKTELGGPQGSLGRASLSGPFG------PGPQGGPPSR----DRRHLGVQ 460
LP P K E G P G G L GP G PGP G P R D G+
Sbjct: 363 LPGL----PGEKGERGFP-GIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGIS 417
Query: 461 I-------GRVRVPLGSALPYPARSELAPPGARDALSPDPERP--CPGTRGVRSGREGLL 511
I G+ P P PA + P + + P P P PG +G++ G +G+
Sbjct: 418 IPGPPGLDGQPGAPGLPGPPGPAGPHIPP--SDEICEPGPPGPPGSPGDKGLQ-GEQGVK 474
Query: 512 SPAPRSAL-----GETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPG-PAESAR 560
+ G + P Q + PPG G G AG P G P
Sbjct: 475 GDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGA 534
Query: 561 SRGPRPGWDTPEKGDHLLSFTMQEDVGPL 589
P E GD L M+ D G L
Sbjct: 535 PGAPGFPGSKGEPGDILTFPGMKGDKGEL 563
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 62.0 bits (149), Expect = 2e-09
Identities = 81/291 (27%), Positives = 104/291 (35%), Gaps = 85/291 (29%)
Query: 308 PHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEG 366
P F GP PGP G+ P PP P+G + G GLP G
Sbjct: 62 PGFPGPEGPPGPRGQKGDDGIPGPPG----------PKGIR---------GPPGLPGFPG 102
Query: 367 APDM-GSSG-EGAGLEEGSP----LRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRR-GP 419
P + G G +GA +G P + ER +P G G P Q GP
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPGCNGTKGERGFP--------------GSPGFPGLQGPPGP 148
Query: 420 SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
+ G GS+ +SL GP G GPP G+Q +P + +P P
Sbjct: 149 PGIPGMKGEPGSIIMSSLPGPKGNPGYPGPP-------GIQ----GLPGPTGIPGP---- 193
Query: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
+ PPG + P PG +G GL P+ GE ++ PPGP
Sbjct: 194 IGPPGPPGLMGPPGPPGLPGPKG----NMGLNFQGPKGEKGEQG---------LQGPPGP 240
Query: 540 RG---------------GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 575
G G G R PPGP GP PG + EKG+
Sbjct: 241 PGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGP-PGGEKGEKGE 290
Score = 52.8 bits (125), Expect = 1e-06
Identities = 81/290 (27%), Positives = 104/290 (35%), Gaps = 52/290 (17%)
Query: 311 NGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTP--RGRQSLAEGVKRDGGQGLPDVEGA 367
+GPP PG PG P PP L G P +G + A G G+P GA
Sbjct: 490 SGPPGQPGLPGLPG------PPGSL------GFPGQKGEKGQAGATGPKGLPGIPGAPGA 537
Query: 368 PDM-GSSGEGAGL-----------EEGSP-LRRERAWPPPSLRTPTPGLT--EGGGTGLP 412
P GS GE + E GSP P + PGL +G G+
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIT 597
Query: 413 SKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP----- 467
K RGP L G G++G GP G GP G + + + G+ +P
Sbjct: 598 FKGERGPPGNPGLPGLPGNIGP---MGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGD 654
Query: 468 LGSALPYPARSELAPPGARD---ALSPDPERP-CPGTRGV--RSGREGLLSPAPRSALGE 521
G + P + L RD L DP P PG G+ G G+ +G
Sbjct: 655 PGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGI------PGIGL 708
Query: 522 TAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTP 571
P F + PPG G G PPGP +G PG+ P
Sbjct: 709 PGPPGPKGFPGIPGPPG-APGTPGRIGLEGPPGPPGFPGPKG-EPGFALP 756
Score = 51.2 bits (121), Expect = 4e-06
Identities = 100/359 (27%), Positives = 113/359 (31%), Gaps = 86/359 (23%)
Query: 283 GLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESG 341
GLP LP + P PP G +PG PG P P ++
Sbjct: 609 GLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDP---------GQTI 659
Query: 342 TPRGRQSLAEGVKRDGGQGLPDVEGAPDM-------GSSGE----GAGLE---------- 380
T G+ L RDG GLP G P GS GE G GL
Sbjct: 660 TQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPG 719
Query: 381 -------EGSPLRRERAWPPPSLRTPTPGLTEG-------GGTGLPS-KQRRGPSPKTEL 425
G+P R PP P P G G GLP K GP
Sbjct: 720 IPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGF 779
Query: 426 GGPQGSLGRASLSGPFGP----GPQG-----GPPSRDRRHLGVQ--------IGRVRVPL 468
GP G GR L G GP GP G GPP +GVQ G + P
Sbjct: 780 PGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLP--GIGVQGPPGPPGIPGPIGQPG 837
Query: 469 GSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS-----GREGLLSPAPRSALGETA 523
+P + + PPG D P ER PG G G GL P A G
Sbjct: 838 LHGIP-GEKGDPGPPGL-DVPGPPGERGSPGIPGAPGPIGPPGSPGL--PGKAGASGFPG 893
Query: 524 PTAQFTFRKVRNPPGPRG-----------GAMSAAGTRSPPGPAESARSRGPRPGWDTP 571
+ PPGP G G G PGP S+G PG P
Sbjct: 894 TKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKG-EPGLPGP 951
Score = 48.1 bits (113), Expect = 3e-05
Identities = 82/268 (30%), Positives = 96/268 (35%), Gaps = 43/268 (16%)
Query: 298 PRSPPRL---GRAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGV 353
P PP L G G P PG PG P PP L G P GR L G+
Sbjct: 1271 PEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGL------QGNP-GRPGL-NGM 1322
Query: 354 KRDGGQGLPDVEGAPDM-GSSG-EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGL 411
K G GLP V G P M G SG G+ EG P PP PGL G +
Sbjct: 1323 K--GDPGLPGVPGFPGMKGPSGVPGSAGPEGEP----GLIGPPG----PPGLPGPSGQSI 1372
Query: 412 PSKQRRGP-----SPKTE-LGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 465
K GP P + L GPQG G +GP G + G P D G + G
Sbjct: 1373 IIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFD--GAGGRKGDPG 1430
Query: 466 VPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSG----REGLLSPAPRSALGE 521
+P P L P D L P PGT V G R + AP+ G
Sbjct: 1431 LP-----GQPGTRGLDGPPGPDGLQGPPGP--PGTSSVAHGFLITRHSQTTDAPQCPQGT 1483
Query: 522 TAPTAQFTFRKVRNPPGPRGGAMSAAGT 549
F+ V+ G + AG+
Sbjct: 1484 LQVYEGFSLLYVQGNKRAHGQDLGTAGS 1511
Score = 47.0 bits (110), Expect = 7e-05
Identities = 90/305 (29%), Positives = 110/305 (36%), Gaps = 49/305 (16%)
Query: 294 LRLPPRSP-PRLGRAPHFNGPPAHPGP-------GRPSTS--PCPLPPSLLCLWVESGTP 343
L +P RS P L G P PGP G P P P+ P+LL E G P
Sbjct: 910 LGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEP 969
Query: 344 RGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGE-------GAGLEEGSPLRRERAWPPPSL 396
G + G QGLP G P G SG+ G G P + PP
Sbjct: 970 -GLPGIPGVSGPKGYQGLPGDPGQP--GLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLK 1026
Query: 397 RT------PTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGG 448
T P P EG G +G+P + P + G +G G +S+ P PGP+G
Sbjct: 1027 GTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQK--GDKGDPGISSIGLPGLPGPKGE 1084
Query: 449 PPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERP-CPGTRGVRSGR 507
P G V P LP PGA+ P P PGT G G
Sbjct: 1085 PGLPGYPGNPGIKGSVGDPGLPGLP-------GTPGAKG----QPGLPGFPGTPG-PPGP 1132
Query: 508 EGLLSPAPRSAL-GETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRP 566
+G+ P L GE P PPG +G G PGPA G +P
Sbjct: 1133 KGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKG----KPGQDGIPGPAGQKGEPG-QP 1187
Query: 567 GWDTP 571
G+ P
Sbjct: 1188 GFGNP 1192
Score = 46.6 bits (109), Expect = 9e-05
Identities = 100/389 (25%), Positives = 123/389 (31%), Gaps = 102/389 (26%)
Query: 285 PILPPAGHTLRLPPRSP----PRLGRAPHFNGPPAHPG-------PGRPST-SPCPLPPS 332
PI PP L PP P P+ +F GP G PG P S P
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPID 252
Query: 333 LLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRR----- 387
+ + G P R G G P + G P +G E+G P +R
Sbjct: 253 VEFQKGDQGLPGDR----------GPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGK 302
Query: 388 --ERAWP-------------------------------PPSLRTPTPG----LTEGGGTG 410
E P PP L P PG + E G G
Sbjct: 303 DGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIG 362
Query: 411 LPSKQRRGPSPKTELGGPQGSLGRASLSGPFG------PGPQGGPPSR----DRRHLGVQ 460
LP P K E G P G G L GP G PGP G P R D G+
Sbjct: 363 LPGL----PGEKGERGFP-GIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGIS 417
Query: 461 I-------GRVRVPLGSALPYPARSELAPPGARDALSPDPERP--CPGTRGVRSGREGLL 511
I G+ P P PA + P + + P P P PG +G++ G +G+
Sbjct: 418 IPGPPGLDGQPGAPGLPGPPGPAGPHIPP--SDEICEPGPPGPPGSPGDKGLQ-GEQGVK 474
Query: 512 SPAPRSAL-----GETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPG-PAESAR 560
+ G + P Q + PPG G G AG P G P
Sbjct: 475 GDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGA 534
Query: 561 SRGPRPGWDTPEKGDHLLSFTMQEDVGPL 589
P E GD L M+ D G L
Sbjct: 535 PGAPGFPGSKGEPGDILTFPGMKGDKGEL 563
Score = 45.1 bits (105), Expect = 3e-04
Identities = 84/302 (27%), Positives = 104/302 (34%), Gaps = 56/302 (18%)
Query: 283 GLPILPPAGHTLRLP-------PRSPPRLGRAPHFNGPPAHPGP----GRPSTSPCPLPP 331
GLP P A LP P P + P G P PGP G P P PP
Sbjct: 1107 GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQ---PGPP 1163
Query: 332 SLLCLWVESGTPRGRQSLA--EGVKRDGGQ---GLPDVEGAPDM-GSSGEGA--GLEEGS 383
E G P G+ + G K + GQ G P G P + G G+G G+
Sbjct: 1164 G------EKGKP-GQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNP 1216
Query: 384 PLRRERAWPP----PSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG 439
L + P P ++ P G G P GP GP G G L G
Sbjct: 1217 GLPGPKGEPGFHGFPGVQGPP------GPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPG 1270
Query: 440 PFG-PGPQGGPPSRDRRHLGVQIGRVRVP--LGSALPYPARSELAPPGARDALSPDPERP 496
P G PG G + + Q G +P G P + PG + + DP P
Sbjct: 1271 PEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGL-NGMKGDPGLP 1329
Query: 497 -CPGTRGVR--SGREGLLSPAPRSAL-GETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSP 552
PG G++ SG G P L G P PGP G ++ G P
Sbjct: 1330 GVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGL---------PGPSGQSIIIKGDAGP 1380
Query: 553 PG 554
PG
Sbjct: 1381 PG 1382
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 62.0 bits (149), Expect = 2e-09
Identities = 82/291 (28%), Positives = 98/291 (33%), Gaps = 51/291 (17%)
Query: 281 AAGLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVES 340
AAG P P T LP AP GPP PG G+P P L
Sbjct: 268 AAGAPGQPGIPGTKGLPG--------APGIAGPPGPPGFGKPGL------PGL------- 306
Query: 341 GTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPT 400
RG L G G QG + G P + G + + P P T
Sbjct: 307 KGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGET-- 364
Query: 401 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG----PGPQGGPPSRDRRH 456
G G P + SP ++ G G G+ L GP G PGP+G P
Sbjct: 365 ---GPAGPAGYPGAKGERGSPGSD--GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPG 419
Query: 457 LGVQIGRVRVPLGSALPYPARSELAP------PGARDALSPDPERPCPGTRGVRSGREGL 510
L +G P G+ E P PG R + P PG++G G G
Sbjct: 420 LPGPVG----PAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKG-DPGSPGP 474
Query: 511 LSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESA 559
PA + G PT PPGPRG G G PPGP A
Sbjct: 475 PGPAGIATKGLNGPTGP------PGPPGPRGHSGEPGLPGPPGPPGPPGQA 519
Score = 60.8 bits (146), Expect = 5e-09
Identities = 90/317 (28%), Positives = 110/317 (34%), Gaps = 58/317 (18%)
Query: 289 PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGT------ 342
P GH P P G +P G P PGP PS P P L E G
Sbjct: 70 PRGHPGPSGPPGKPGYG-SPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGD 128
Query: 343 --------PR-----------------GRQSLAEGVKRDGGQGLPDVEGAPDM-GSSGEG 376
PR G+ G +G P +GAP + G +G+
Sbjct: 129 VGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQK 188
Query: 377 AGLEEGSPLR-RERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRA 435
+ G+P R ER P P + PT G +G P +RG + G +G G
Sbjct: 189 GEMGYGAPGRPGERGLPGP--QGPT------GPSGPPGVGKRGENGVPGQPGIKGDRGFP 240
Query: 436 SLSGPFG-PGPQGGPPSRDRRHLGV-----QIGRVRVPLGSALPYPARSELAPPGARDAL 489
GP G PGPQG P R +G G+ +P LP A PPG
Sbjct: 241 GEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLP-GAPGIAGPPGPPGFG 299
Query: 490 SPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAA 547
P PG +G R G GL P A GE P + PPG G G
Sbjct: 300 KPG----LPGLKGER-GPAGL--PGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIP 352
Query: 548 GTRSPPGPAESARSRGP 564
G+ PGP GP
Sbjct: 353 GSHGLPGPKGETGPAGP 369
Score = 53.9 bits (128), Expect = 6e-07
Identities = 83/306 (27%), Positives = 100/306 (32%), Gaps = 60/306 (19%)
Query: 285 PILPPAGHTLRLPP--RSPPRLGRAPHFNGPPAHPG-------PGRPSTSPCPLPPSLLC 335
PI PP PP R P +G+ P G P PG PG P + P PP
Sbjct: 245 PIGPPGPQG---PPGERGPEGIGK-PGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPG--- 297
Query: 336 LWVESGTP-----RGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERA 390
+ + G P RG L G G QG + G P + G + +
Sbjct: 298 -FGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHG 356
Query: 391 WPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG----PGPQ 446
P P T G G P + SP ++ G G G+ L GP G PGP+
Sbjct: 357 LPGPKGETGP-----AGPAGYPGAKGERGSPGSD--GKPGYPGKPGLDGPKGNPGLPGPK 409
Query: 447 GGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSG 506
G P V P G P PG P PGTRG G
Sbjct: 410 GDPG-------------VGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGP-IG 455
Query: 507 REGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAA-GTRSPPGPAESARSRGPR 565
G+ P + G+ PPGP G A G PPGP R
Sbjct: 456 PPGI--PGFPGSKGDPGSPG---------PPGPAGIATKGLNGPTGPPGP-PGPRGHSGE 503
Query: 566 PGWDTP 571
PG P
Sbjct: 504 PGLPGP 509
Score = 51.2 bits (121), Expect = 4e-06
Identities = 71/240 (29%), Positives = 87/240 (36%), Gaps = 54/240 (22%)
Query: 350 AEGVKRDGGQGLPDVEGAPDM----GSSGEGAGLEEGSP-LRRERAWPPPSLRTPTPGLT 404
++G+ G QG P G G SG GSP L+ E P P P P
Sbjct: 50 SKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGP----PGPSAV 105
Query: 405 -EGGGTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQI 461
+ G GLP K RGP GP+G +G A L GP G PGP G P
Sbjct: 106 GKPGVPGLPGKPGERGPY------GPKGDVGPAGLPGPRGPPGPPGIPG----------- 148
Query: 462 GRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV-------------RSGRE 508
P G ++P + P GA E+ PG G+ R G
Sbjct: 149 -----PAGISVP-GKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGER 202
Query: 509 GLLSPAPRSALGETAP--TAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP 564
GL P P+ G + P + V PG +G G G PPGP RGP
Sbjct: 203 GL--PGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGP 260
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 62.0 bits (149), Expect = 2e-09
Identities = 77/262 (29%), Positives = 99/262 (37%), Gaps = 50/262 (19%)
Query: 299 RSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGG 358
+ PP + P GP PG G+P + P P P G+ G
Sbjct: 254 KGPPGMHGPP---GPVGLPGVGKPGVTGFPGPQG----------PLGKPGAPGEPGPQGP 300
Query: 359 QGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRG 418
G+P V+G P G G G ++G P + +P PGL G GLP + G
Sbjct: 301 IGVPGVQGPP--GIPGIGKPGQDGIP--GQPGFPGGKGEQGLPGLP--GPPGLPGIGKPG 354
Query: 419 -PSPKTE--LGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYP 475
P PK + +GG G+LG GP G GGPP G +P +P P
Sbjct: 355 FPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPP-----------GEPGLP---GIPGP 400
Query: 476 ARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLLS-PAPRSALGETAPTAQFTFRK 532
+ PPGA P E G +G G GL P LGE P R
Sbjct: 401 ----MGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPG---MRG 453
Query: 533 VRNPPGPRGGAMSAAGTRSPPG 554
+ P GP+G AG + PG
Sbjct: 454 LPGPIGPKG----EAGQKGVPG 471
Score = 53.9 bits (128), Expect = 6e-07
Identities = 90/322 (27%), Positives = 111/322 (34%), Gaps = 51/322 (15%)
Query: 283 GLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESG 341
G P LP G P+ +G P GP GP G P P P L + G
Sbjct: 343 GPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMG 402
Query: 342 TPRGRQSLAEGVKRDGG----QGLPDVEGAPDM-GSSGEGAGLEEGSPLRRERAWPPP-- 394
P G K +GG QG P +G P + G G+ L E P R P P
Sbjct: 403 PPGAIGF--PGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGM-RGLPGPIG 459
Query: 395 ----SLRTPTPGLT-------EGGGTGLPSKQR-RGPSPKTELGGPQGSLGRASLSGPFG 442
+ + PGL G G+P Q +GP +GGP G +G + GP G
Sbjct: 460 PKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKG 519
Query: 443 ----PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCP 498
PGP G P G P A PPG AL P + P
Sbjct: 520 EPGLPGPPGFP-------------------GIGKPGVAGLH-GPPGKPGALGPQGQPGLP 559
Query: 499 GTRGVRS--GREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPA 556
G G G ++ P P GE P V+ PP G G + PA
Sbjct: 560 GPPGPPGPPGPPAVMPPTP-PPQGEYLPDMGLGIDGVK-PPHAYGAKKGKNGGPAYEMPA 617
Query: 557 ESARSRGPRPGWDTPEKGDHLL 578
+A P P P K + LL
Sbjct: 618 FTAELTAPFPPVGAPVKFNKLL 639
Score = 45.1 bits (105), Expect = 3e-04
Identities = 65/248 (26%), Positives = 84/248 (33%), Gaps = 62/248 (25%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPD-M 370
GP PGP P P PP L G G+P ++G P
Sbjct: 121 GPRGEPGPRGP-----PGPPGL-----------------------PGHGIPGIKGKPGPQ 152
Query: 371 GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG 430
G G G G P + A P + E G G+P Q GP G
Sbjct: 153 GYPGVGKPGMPGMP-GKPGAMGMPGAKGEIGQKGEIGPMGIPGPQ-----------GPPG 200
Query: 431 SLGRASLSGPFGPGPQGGP-PSRDRRHLGVQIGR-VRVPLGSALPYPARSELAPPGARDA 488
G + P GPG G P P DR G+ + +R P G PGA
Sbjct: 201 PHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGD-------KGFGMPGAPGV 253
Query: 489 LSPDPERPCPGTRGVRS-GREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSA 546
P PG G+ G+ G+ P P+ LG+ + PGP+ G +
Sbjct: 254 KGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGE---------PGPQ-GPIGV 303
Query: 547 AGTRSPPG 554
G + PPG
Sbjct: 304 PGVQGPPG 311
Score = 37.4 bits (85), Expect = 0.055
Identities = 43/155 (27%), Positives = 60/155 (38%), Gaps = 12/155 (7%)
Query: 408 GTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGV--QIGRVR 465
G +P RG GP+G G L G PG +G P + +G G
Sbjct: 108 GKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPG 167
Query: 466 VPLGSALPYPARSELAPPGARDALS-PDPERPCPGTRGV----RSGREGLLSPAPRSALG 520
P +P A+ E+ G + P P+ P PG G+ + G GL P G
Sbjct: 168 KPGAMGMP-GAKGEIGQKGEIGPMGIPGPQGP-PGPHGLPGIGKPGGPGL--PGQPGPKG 223
Query: 521 ETAPTAQFTFRKVRNPPGPRG-GAMSAAGTRSPPG 554
+ P + +R P G +G G A G + PPG
Sbjct: 224 DRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPG 258
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 62.0 bits (149), Expect = 2e-09
Identities = 77/262 (29%), Positives = 99/262 (37%), Gaps = 50/262 (19%)
Query: 299 RSPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGG 358
+ PP + P GP PG G+P + P P P G+ G
Sbjct: 254 KGPPGMHGPP---GPVGLPGVGKPGVTGFPGPQG----------PLGKPGAPGEPGPQGP 300
Query: 359 QGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRG 418
G+P V+G P G G G ++G P + +P PGL G GLP + G
Sbjct: 301 IGVPGVQGPP--GIPGIGKPGQDGIP--GQPGFPGGKGEQGLPGLP--GPPGLPGIGKPG 354
Query: 419 -PSPKTE--LGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYP 475
P PK + +GG G+LG GP G GGPP G +P +P P
Sbjct: 355 FPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPP-----------GEPGLP---GIPGP 400
Query: 476 ARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLLS-PAPRSALGETAPTAQFTFRK 532
+ PPGA P E G +G G GL P LGE P R
Sbjct: 401 ----MGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPG---MRG 453
Query: 533 VRNPPGPRGGAMSAAGTRSPPG 554
+ P GP+G AG + PG
Sbjct: 454 LPGPIGPKG----EAGQKGVPG 471
Score = 53.9 bits (128), Expect = 6e-07
Identities = 90/322 (27%), Positives = 111/322 (34%), Gaps = 51/322 (15%)
Query: 283 GLPILPPAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESG 341
G P LP G P+ +G P GP GP G P P P L + G
Sbjct: 343 GPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMG 402
Query: 342 TPRGRQSLAEGVKRDGG----QGLPDVEGAPDM-GSSGEGAGLEEGSPLRRERAWPPP-- 394
P G K +GG QG P +G P + G G+ L E P R P P
Sbjct: 403 PPGAIGF--PGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGM-RGLPGPIG 459
Query: 395 ----SLRTPTPGLT-------EGGGTGLPSKQR-RGPSPKTELGGPQGSLGRASLSGPFG 442
+ + PGL G G+P Q +GP +GGP G +G + GP G
Sbjct: 460 PKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKG 519
Query: 443 ----PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCP 498
PGP G P G P A PPG AL P + P
Sbjct: 520 EPGLPGPPGFP-------------------GIGKPGVAGLH-GPPGKPGALGPQGQPGLP 559
Query: 499 GTRGVRS--GREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPA 556
G G G ++ P P GE P V+ PP G G + PA
Sbjct: 560 GPPGPPGPPGPPAVMPPTP-PPQGEYLPDMGLGIDGVK-PPHAYGAKKGKNGGPAYEMPA 617
Query: 557 ESARSRGPRPGWDTPEKGDHLL 578
+A P P P K + LL
Sbjct: 618 FTAELTAPFPPVGAPVKFNKLL 639
Score = 45.1 bits (105), Expect = 3e-04
Identities = 65/248 (26%), Positives = 84/248 (33%), Gaps = 62/248 (25%)
Query: 312 GPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPD-M 370
GP PGP P P PP L G G+P ++G P
Sbjct: 121 GPRGEPGPRGP-----PGPPGL-----------------------PGHGIPGIKGKPGPQ 152
Query: 371 GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG 430
G G G G P + A P + E G G+P Q GP G
Sbjct: 153 GYPGVGKPGMPGMP-GKPGAMGMPGAKGEIGQKGEIGPMGIPGPQ-----------GPPG 200
Query: 431 SLGRASLSGPFGPGPQGGP-PSRDRRHLGVQIGR-VRVPLGSALPYPARSELAPPGARDA 488
G + P GPG G P P DR G+ + +R P G PGA
Sbjct: 201 PHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGD-------KGFGMPGAPGV 253
Query: 489 LSPDPERPCPGTRGVRS-GREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSA 546
P PG G+ G+ G+ P P+ LG+ + PGP+ G +
Sbjct: 254 KGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGE---------PGPQ-GPIGV 303
Query: 547 AGTRSPPG 554
G + PPG
Sbjct: 304 PGVQGPPG 311
Score = 37.4 bits (85), Expect = 0.055
Identities = 43/155 (27%), Positives = 60/155 (38%), Gaps = 12/155 (7%)
Query: 408 GTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGV--QIGRVR 465
G +P RG GP+G G L G PG +G P + +G G
Sbjct: 108 GKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPG 167
Query: 466 VPLGSALPYPARSELAPPGARDALS-PDPERPCPGTRGV----RSGREGLLSPAPRSALG 520
P +P A+ E+ G + P P+ P PG G+ + G GL P G
Sbjct: 168 KPGAMGMP-GAKGEIGQKGEIGPMGIPGPQGP-PGPHGLPGIGKPGGPGL--PGQPGPKG 223
Query: 521 ETAPTAQFTFRKVRNPPGPRG-GAMSAAGTRSPPG 554
+ P + +R P G +G G A G + PPG
Sbjct: 224 DRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPG 258
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 61.6 bits (148), Expect = 3e-09
Identities = 105/357 (29%), Positives = 126/357 (35%), Gaps = 89/357 (24%)
Query: 283 GLPILP----PAGHTLRLPPRSPPRLGRAPHFNGPPAHPGP----------------GRP 322
G+P LP P GH P P GPP +PGP G
Sbjct: 671 GIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEK 730
Query: 323 STSPCPLPPSLLCLWVESGT-----PRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGA 377
P + L + G PRG EG K GQ EG P GS+GE
Sbjct: 731 GEDGFPGFKGDVGLKGDQGKPGAPGPRGEDG-PEGPKGQAGQA--GEEGPP--GSAGEKG 785
Query: 378 GL-EEGSPLRRERAWPPPSLRTPTP-----GLTEGGGTGLP----------SKQRRG--- 418
L G P R P S+ P P + G TG P S+ RG
Sbjct: 786 KLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPG 845
Query: 419 ----PSPKTELG-----GPQGSLGRASLSGPFG-PGPQGGPPSR----------DRRHLG 458
P PK ++G G G G L GP G PGP+G P + R LG
Sbjct: 846 ATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELG 905
Query: 459 VQIGRVRV--PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLLSP- 513
Q G+ P G P E+ P G R P P P PG +G+ GREG
Sbjct: 906 FQ-GQTGPPGPAGVLGPQGKTGEVGPLGERG--PPGPPGP-PGEQGLPGLEGREGAKGEL 961
Query: 514 APRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRGPR 565
P LG+ P +R PGP+G G G + PPGP + S G R
Sbjct: 962 GPPGPLGKEGPAG------LRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGER 1012
Score = 61.6 bits (148), Expect = 3e-09
Identities = 89/297 (29%), Positives = 101/297 (34%), Gaps = 73/297 (24%)
Query: 308 PHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEG 366
P GP HPGP G PP L + G + + G QGLP G
Sbjct: 1102 PGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGV----RGFVGVIGPPGLQGLPGPPG 1157
Query: 367 AP----DMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPS----KQRRG 418
D+GS G G+P R P S TPGL GG G P K RG
Sbjct: 1158 EKGEVGDVGSMGP-----HGAPGPRGPQGPTGS--EGTPGLP--GGVGQPGAVGEKGERG 1208
Query: 419 ----PSPKTELG--GPQGSLGRASLSGPFG-PGPQG--GPPSRDRRHLGVQIGRVRVPLG 469
P P G GP+G +G SGP G GP G GPP D G
Sbjct: 1209 DAGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAK------------G 1256
Query: 470 SALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFT 529
S P +L PPG D G+ G + + P P A GE
Sbjct: 1257 SVGPTGLPGDLGPPGDPGVSGID------GSPGEKGDPGDVGGPGPPGASGEPG------ 1304
Query: 530 FRKVRNPPGPRG--------------GAMSAAGTRSPPGPAESARSRGPRPGWDTPE 572
PPG RG GA G PPG +RGP PG PE
Sbjct: 1305 ---APGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGP-PGRVGPE 1357
Score = 60.5 bits (145), Expect = 6e-09
Identities = 90/323 (27%), Positives = 114/323 (35%), Gaps = 51/323 (15%)
Query: 297 PPRSPPRLGR--APHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVK 354
PP S G+ P G P PGP P PL P + + + + Q EG +
Sbjct: 777 PPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGP----IGEKGKSGKTGQPGLEGER 832
Query: 355 RDGG----QGLPDVEGAP----DMGSSGE-GAGLEEGSP-LRRERAWPPPSLRTPTPGLT 404
G +G P G P D+G G G E+G P L+ +P P + P
Sbjct: 833 GPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGP--KGPPGHQG 890
Query: 405 EGGGTGLPSKQ-------RRGPSPKTELGGPQGS------LGRASLSGPFGP-GPQGGPP 450
+ G G P ++ + GP + GPQG LG GP GP G QG P
Sbjct: 891 KDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPG 950
Query: 451 SRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPD-------PERPC-----P 498
R ++G PLG P R P G P P P P
Sbjct: 951 LEGREGAKGELGPPG-PLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSP 1009
Query: 499 GTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPA 556
G RG G+ P + G P + R R PPGP G G G PPG A
Sbjct: 1010 GERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAA 1069
Query: 557 ESARSRGPRPGWDTP----EKGD 575
+ G + P KGD
Sbjct: 1070 GPSGEEGDKGDVGAPGHKGSKGD 1092
Score = 53.9 bits (128), Expect = 6e-07
Identities = 71/237 (29%), Positives = 94/237 (39%), Gaps = 37/237 (15%)
Query: 357 GGQGLPDVEGAP-DMGSSG-EGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSK 414
G GLP G P D G SG +G+ E+G P PP + P G G P K
Sbjct: 1259 GPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEP-------GAPGPPGK 1311
Query: 415 QRRGPSPKTELGGPQGSLGRASLSGPFGPG----PQG--GPPSRDRRHLGVQ-IGRVRVP 467
RGPS G +G G GP GP P G GPP R +G + + + P
Sbjct: 1312 --RGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGR----VGPEGLRGIPGP 1365
Query: 468 LGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALGETAPT 525
+G A ++ PPG + G +G + G GL+ P GE
Sbjct: 1366 VGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPP-----GEAGEK 1420
Query: 526 AQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRGPR--PGWDTPEKGD 575
V+ PPGP+G G + + G PPG A +G + PG P +GD
Sbjct: 1421 GDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGP-RGD 1476
Score = 50.1 bits (118), Expect = 8e-06
Identities = 78/269 (28%), Positives = 94/269 (34%), Gaps = 50/269 (18%)
Query: 312 GPPAHPG-PGRPSTSPCPLPPSLLCLWVESGT--PRGRQSLAEGVKRDGGQGLPDVEGAP 368
GPP G GRP P P L G PRG Q R G G P +GA
Sbjct: 479 GPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGA- 537
Query: 369 DMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPS-KQRRGPSPKTELGG 427
GL + + +R + G GLP K +RG G
Sbjct: 538 --------RGLPGDTGPKGDRGFD--------------GLPGLPGEKGQRGDFGHVGQPG 575
Query: 428 PQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALP--YPARSEL-APPG 484
P G G GP GP Q G P R LG P GS P P + + PG
Sbjct: 576 PPGEDGERGAEGPPGPTGQAGEPG-PRGLLG--------PRGSPGPTGRPGVTGIDGAPG 626
Query: 485 ARDALSPDPERPCPGTRGVRSGREGLLSPAPRSAL---GETAPTAQFTFRKVRNPPGPRG 541
A+ + P E PG +G G +GL P P+ + GE P + GP G
Sbjct: 627 AKGNVGPPGEPGPPGQQG-NHGSQGL--PGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLG 683
Query: 542 -----GAMSAAGTRSPPGPAESARSRGPR 565
G G + PPG A GPR
Sbjct: 684 HPGHEGPTGEKGAQGPPGSAGPPGYPGPR 712
Score = 47.8 bits (112), Expect = 4e-05
Identities = 77/270 (28%), Positives = 92/270 (34%), Gaps = 53/270 (19%)
Query: 301 PPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQ 359
P + + F GPP PGP G S P PP + P G L DG +
Sbjct: 381 PAVIEKGQQFEGPPGAPGPQGVVGPSGPPGPPG----FPGDPGPPGPAGLPGIPGIDGIR 436
Query: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGP 419
G P G M G +G P+ ++A L+ T L K GP
Sbjct: 437 GPP---GTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQ----------TQLSMKGPPGP 483
Query: 420 SPKTELGGPQGSLGRASLSGPFG-PGPQG--------GPPSRDRRHLGVQIGRVRVPLGS 470
T GP G G L G G GPQG GPP R +G ++GR
Sbjct: 484 VGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGR----VG-KMGRPGADGAR 538
Query: 471 ALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTF 530
LP + P G R D PG +G R + P P GE
Sbjct: 539 GLP----GDTGPKGDRGF---DGLPGLPGEKGQRGDFGHVGQPGPPGEDGE--------- 582
Query: 531 RKVRNPPGPRG-----GAMSAAGTRSPPGP 555
R PPGP G G G R PGP
Sbjct: 583 RGAEGPPGPTGQAGEPGPRGLLGPRGSPGP 612
Score = 45.4 bits (106), Expect = 2e-04
Identities = 92/311 (29%), Positives = 117/311 (37%), Gaps = 62/311 (19%)
Query: 296 LPPRSPPRLGRAPHFNGPPAHPGP-GRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVK 354
L P L P G P PGP G P P +G+P R L
Sbjct: 967 LGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGA------NGSPGERGPLGPA-- 1018
Query: 355 RDGGQGLPDVEGAPD-MGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPS 413
GG GLP G+ +G +G+ +GS R ER P P+ + PG G G P
Sbjct: 1019 --GGIGLPGQSGSEGPVGPAGK-----KGS--RGERGPPGPTGKDGIPGPL--GPLGPPG 1067
Query: 414 KQRRGPS----PKTELGGP--QGSLGRASLSGPFGP----GPQG--GPPSRD----RRHL 457
GPS K ++G P +GS G +GP G GP G GPP D RR
Sbjct: 1068 AA--GPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGP 1125
Query: 458 GVQIGR-----VRVPLGSALPYPARSELAPPGAR----DALSPDPERPCPGTRGVR--SG 506
G+ VR +G P + PPG + D S P PG RG + +G
Sbjct: 1126 PGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGP-HGAPGPRGPQGPTG 1184
Query: 507 REGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAES 558
EG +P +G+ + R PGP G G + G P G A
Sbjct: 1185 SEG--TPGLPGGVGQPGAVGEKGERGDAGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGP 1242
Query: 559 ARSRGPRPGWD 569
+GP PG D
Sbjct: 1243 PGKKGP-PGED 1252
Score = 41.2 bits (95), Expect = 0.004
Identities = 71/268 (26%), Positives = 88/268 (32%), Gaps = 54/268 (20%)
Query: 297 PPRSPPRLG--RAPHFNGPPAHPG-PGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGV 353
PP P G +P G P G PG P S P P P G++ + +
Sbjct: 1269 PPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPG----------PPGKRGPSGHM 1318
Query: 354 KRDGGQGLPDVEGAPDM-GSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLP 412
R+G +G +G P G G + P R P LR + E G G P
Sbjct: 1319 GREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVG---PEGLRGIPGPVGEPGLLGAP 1375
Query: 413 SKQRRGPSPKTELG--------GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ--IG 462
Q P P G GP+G G L G GP + G D+ GVQ G
Sbjct: 1376 G-QMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKG-DQGLPGVQGPPG 1433
Query: 463 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGET 522
P G P + PPG L + PG+ G R G+T
Sbjct: 1434 PKGDP-GPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPR---------------GDT 1477
Query: 523 APTAQFTFRKVRNPPGPRGGAMSAAGTR 550
P PPGP G G R
Sbjct: 1478 GPA---------GPPGPPGAPAELHGLR 1496
Score = 36.6 bits (83), Expect = 0.095
Identities = 72/282 (25%), Positives = 99/282 (35%), Gaps = 32/282 (11%)
Query: 311 NGPPAHPGPGRPST------SPCP-LPPSLLCLWVESGTPRGRQS--LAEGVKRDGGQGL 361
+ PP + ST +P P LPP+ L V S G + L + D G L
Sbjct: 273 SSPPPDSAENQTSTDIPKTETPAPNLPPTPTPLVVTSTVTTGLNATILERSLDPDSGTEL 332
Query: 362 PDVEG-APDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPS 420
+E A G+ + + P R +P + PG E G G P+ +G
Sbjct: 333 GTLETKAAREDEEGDDSTM---GPDFRAAEYPSRTQFQIFPGAGEKGAKGEPAVIEKGQQ 389
Query: 421 PKTELG--GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPAR- 477
+ G GPQG +G + GP G GPP I +R P G+ + P +
Sbjct: 390 FEGPPGAPGPQGVVGPSGPPGPPGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIMMPFQF 449
Query: 478 ---SELAPP-----GARDALSPDPERPCPGTRGV--RSGREGLLS-PAPRSALGETAPTA 526
S PP A+ + G G +GR G + P GE
Sbjct: 450 AGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEG 509
Query: 527 QFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRG 563
R ++ P GP G G A G R PG RG
Sbjct: 510 PQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRG 551
Score = 34.7 bits (78), Expect = 0.36
Identities = 57/217 (26%), Positives = 71/217 (32%), Gaps = 44/217 (20%)
Query: 288 PPAGHTLRLPPRSPPRLGRAPHFN--------GPPAHPGPGRPSTSPCPL----PPSLLC 335
PP P P + G + H G PGP P P+ PP +
Sbjct: 1296 PPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRV- 1354
Query: 336 LWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPD-MGSSGEGAGLEEGSPLRRERAWPPP 394
P G + + V G G P G P +G SG + P +
Sbjct: 1355 ------GPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLI 1408
Query: 395 SLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG--GPQGSLGRASLSGPFGP--------- 443
L P E G GLP Q P PK + G GP GSLG G GP
Sbjct: 1409 GLIGPPGEAGEKGDQGLPGVQGP-PGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGS 1467
Query: 444 ----GPQG--------GPPSRDRRHLGVQIGRVRVPL 468
GP+G GPP G++ R VP+
Sbjct: 1468 PGSMGPRGDTGPAGPPGPPGAPAELHGLRRRRRFVPV 1504
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,271,658
Number of Sequences: 37866
Number of extensions: 3010826
Number of successful extensions: 17947
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 1103
Number of HSP's that attempted gapping in prelim test: 11151
Number of HSP's gapped (non-prelim): 4259
length of query: 800
length of database: 18,247,518
effective HSP length: 110
effective length of query: 690
effective length of database: 14,082,258
effective search space: 9716758020
effective search space used: 9716758020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.