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Search of human proteins with 116812604
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo
sapiens]
(89 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens] 186 3e-48
gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo sapiens] 186 3e-48
gi|112420992 crumbs homolog 2 [Homo sapiens] 33 0.037
gi|239756699 PREDICTED: hypothetical protein [Homo sapiens] 32 0.082
gi|239745682 PREDICTED: hypothetical protein XP_002343543 [Homo ... 32 0.082
gi|13569940 keratin associated protein 1-3 [Homo sapiens] 32 0.11
gi|9506545 delta-like 4 protein precursor [Homo sapiens] 32 0.14
gi|13994360 keratin associated protein 1.5 [Homo sapiens] 32 0.14
gi|13569942 keratin associated protein 1-1 [Homo sapiens] 32 0.14
gi|53829381 plasminogen activator, urokinase receptor isoform 3 ... 30 0.41
gi|4505865 plasminogen activator, urokinase receptor isoform 1 p... 30 0.41
gi|134244285 Notch homolog 3 [Homo sapiens] 30 0.41
gi|38490568 keratin associated protein 10-4 [Homo sapiens] 30 0.41
gi|154759251 keratin associated protein 10-9 [Homo sapiens] 30 0.41
gi|38490571 keratin associated protein 10-7 [Homo sapiens] 30 0.41
gi|55770876 notch4 preproprotein [Homo sapiens] 30 0.53
gi|111074524 Src homology 2 domain containing F [Homo sapiens] 29 0.69
gi|34996523 LY6/PLAUR domain containing 6 [Homo sapiens] 29 0.91
gi|148833508 notch1 preproprotein [Homo sapiens] 28 1.2
gi|24041035 notch 2 preproprotein [Homo sapiens] 28 1.5
gi|148727298 keratin associated protein 10-6 [Homo sapiens] 28 1.5
gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens] 28 2.0
gi|4557679 jagged 1 precursor [Homo sapiens] 27 2.6
gi|110735443 delta-like 1 [Homo sapiens] 27 2.6
gi|239752100 PREDICTED: hypothetical protein [Homo sapiens] 27 2.6
gi|239746604 PREDICTED: similar to Keratin-associated protein 10... 27 2.6
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 27 2.6
gi|63053517 keratin associated protein 10-5 [Homo sapiens] 27 2.6
gi|21704279 jagged 2 isoform b precursor [Homo sapiens] 27 3.4
gi|21704277 jagged 2 isoform a precursor [Homo sapiens] 27 3.4
>gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens]
Length = 141
Score = 186 bits (472), Expect = 3e-48
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MCQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPK 60
MCQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPK
Sbjct: 53 MCQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPK 112
Query: 61 KRGSSASALRPGLRTTILFLKLALFSAHC 89
KRGSSASALRPGLRTTILFLKLALFSAHC
Sbjct: 113 KRGSSASALRPGLRTTILFLKLALFSAHC 141
>gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo
sapiens]
Length = 89
Score = 186 bits (472), Expect = 3e-48
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MCQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPK 60
MCQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPK
Sbjct: 1 MCQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPK 60
Query: 61 KRGSSASALRPGLRTTILFLKLALFSAHC 89
KRGSSASALRPGLRTTILFLKLALFSAHC
Sbjct: 61 KRGSSASALRPGLRTTILFLKLALFSAHC 89
>gi|112420992 crumbs homolog 2 [Homo sapiens]
Length = 1285
Score = 33.5 bits (75), Expect = 0.037
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 2 CQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVC----ISCCNTPLCNGP 57
C++EV+E ++ C +A+CL ++ C PG +C C ++P +G
Sbjct: 220 CEREVLECASA-----PCEHNASCLEGLGSFRCLCWPGYSGELCEVDEDECASSPCQHGG 274
Query: 58 RPKKRGSSA--SALRPGLRTTILFLKLALFSAHC 89
R +R A ++ F A F HC
Sbjct: 275 RCLQRSDPALYGGVQAAFPGAFSFRHAAGFLCHC 308
>gi|239756699 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 32.3 bits (72), Expect = 0.082
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 14 MYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGL 73
++ S SS AC + G + + G+L +C SC + P P GSS LRP L
Sbjct: 92 VHTSSSFSSWACSSSMPGGNTRRA-GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLL 150
Query: 74 RTTI 77
T I
Sbjct: 151 HTRI 154
>gi|239745682 PREDICTED: hypothetical protein XP_002343543 [Homo
sapiens]
Length = 302
Score = 32.3 bits (72), Expect = 0.082
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 14 MYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGL 73
++ S SS AC + G + + G+L +C SC + P P GSS LRP L
Sbjct: 93 VHTSSSFSSWACSSSMPGGNTRRA-GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLL 151
Query: 74 RTTI 77
T I
Sbjct: 152 HTRI 155
>gi|13569940 keratin associated protein 1-3 [Homo sapiens]
Length = 167
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 18 SCASSAACLIASAGYQSFCSPGKLNSVCI--SCCNTPLC 54
SC + C + G+ SF + G +S C SCC T C
Sbjct: 33 SCCQPSCCQTSFCGFPSFSTSGTCSSSCCQPSCCETSCC 71
>gi|9506545 delta-like 4 protein precursor [Homo sapiens]
Length = 685
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 19 CASSAACLIASAGYQSFCSPGKLNSVC----ISCCNTPLCNGPRPKKRGSSAS 67
C + +C GY C PG C +SC ++P NG ++R A+
Sbjct: 333 CRNGGSCKDQEDGYHCLCPPGYYGLHCEHSTLSCADSPCFNGGSCRERNQGAN 385
>gi|13994360 keratin associated protein 1.5 [Homo sapiens]
Length = 174
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 18 SCASSAACLIASAGYQSFCSPGKLNSVCI--SCCNTPLC 54
SC +C + G+ SF + G +S C SCC T C
Sbjct: 33 SCCQPRSCQTSFCGFPSFSTSGTCSSSCCQPSCCETSCC 71
>gi|13569942 keratin associated protein 1-1 [Homo sapiens]
Length = 177
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 18 SCASSAACLIASAGYQSFCSPGKLNSVCI--SCCNTPLC 54
SC + C + G+ SF + G +S C SCC T C
Sbjct: 43 SCCQPSCCQTSFCGFPSFSTGGTCDSSCCQPSCCETSCC 81
>gi|53829381 plasminogen activator, urokinase receptor isoform 3
precursor [Homo sapiens]
Length = 290
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 17 KSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPG---L 73
+ CA+++ C A G +N + +SCC CN P + S +A +PG L
Sbjct: 216 RGCATASMCQHAHLG-----DAFSMNHIDVSCCTKSGCNHPDLDVQYRSGAAPQPGPAHL 270
Query: 74 RTTILFLKLA 83
TI L A
Sbjct: 271 SLTITLLMTA 280
>gi|4505865 plasminogen activator, urokinase receptor isoform 1
precursor [Homo sapiens]
Length = 335
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 17 KSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPG---L 73
+ CA+++ C A G +N + +SCC CN P + S +A +PG L
Sbjct: 261 RGCATASMCQHAHLG-----DAFSMNHIDVSCCTKSGCNHPDLDVQYRSGAAPQPGPAHL 315
Query: 74 RTTILFLKLA 83
TI L A
Sbjct: 316 SLTITLLMTA 325
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 1 MCQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCI----SCCNTPLCNG 56
+C E+ E ++ C +C+ G++ C PG L +C+ C + P +G
Sbjct: 653 LCNVEINECASS-----PCGEGGSCVDGENGFRCLCPPGSLPPLCLPPSHPCAHEPCSHG 707
Query: 57 PRPKKRGSSASALRPG 72
G PG
Sbjct: 708 ICYDAPGGFRCVCEPG 723
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 18 SCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGLRTTI 77
SC + C+ + C PG + C + L RP G SA PG R T
Sbjct: 932 SCFNGGTCVDGVNSFSCLCRPGYTGAHCQHEADPCLS---RPCLHGGVCSAAHPGFRCTC 988
Query: 78 L 78
L
Sbjct: 989 L 989
>gi|38490568 keratin associated protein 10-4 [Homo sapiens]
Length = 401
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 18 SCASSAACL--IASAGYQSFCSPGKLNSVCISCCNTPLC 54
SC ++C+ ++S Q+ C P S CIS C TP C
Sbjct: 171 SCCQQSSCVSCVSSPCCQAVCEPSPCQSGCISSC-TPSC 208
>gi|154759251 keratin associated protein 10-9 [Homo sapiens]
Length = 292
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 2 CQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCIS-CCNTPLCNG 56
C E S + SC AC +S QS+C P VC C P+C+G
Sbjct: 151 CAPTCSEDSYSCCQQSSC--QPACCTSSPCQQSYCVPVCCKPVCCKPICCVPVCSG 204
>gi|38490571 keratin associated protein 10-7 [Homo sapiens]
Length = 370
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 18 SCASSAACL--IASAGYQSFCSPGKLNSVCISCCNTPLC 54
SC ++C+ ++S Q+ C P S CIS C TP C
Sbjct: 171 SCCQQSSCVSCVSSPCCQAVCEPSPCQSGCISSC-TPSC 208
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 23 AACLIASAGYQSFCSPGKLNSV-CISCCNTPLCNGPRPKKRGS 64
+ C S+ S C P S+ C C+ P C GP ++ S
Sbjct: 327 SCCAPTSSCQASCCRPASCVSLLCRPACSRPACCGPTSTQKSS 369
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 29.6 bits (65), Expect = 0.53
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 2 CQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKK 61
CQK + Q GI C + C+ + Y C PG S+C N C RP +
Sbjct: 886 CQKAALSQ--GIDVSSLCHNGGLCVDSGPSYFCHCPPGFQGSLCQDHVNP--CES-RPCQ 940
Query: 62 RGSSASALRPG 72
G++ A G
Sbjct: 941 NGATCMAQPSG 951
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 17 KSCASSAACLIASAGYQSFCSPGKLNSVC---ISCCNTPLC--NGPRPKKRGSSASALRP 71
+ C + A C+ +GY C+PG C + C + C +G K G A P
Sbjct: 937 RPCQNGATCMAQPSGYLCQCAPGYDGQNCSKELDACQSQPCHNHGTCTPKPGGFHCACPP 996
Query: 72 G 72
G
Sbjct: 997 G 997
>gi|111074524 Src homology 2 domain containing F [Homo sapiens]
Length = 423
Score = 29.3 bits (64), Expect = 0.69
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 2 CQKEVMEQSA-GIMYRKSCASSAACLIASAGYQSFCSPGKLNSVC-----ISCCNTPLCN 55
C+ +E S G + AS L ++ + +P LNS C IS P+ N
Sbjct: 13 CRTGTLEGSRQGSPGHRKRASPKGSLSSAQPHSWMLTPSPLNSHCAHREPISSSPQPVAN 72
Query: 56 GPRPKKRGSSASALR 70
GP+ KK+ + S R
Sbjct: 73 GPKQKKKSNWRSTTR 87
>gi|34996523 LY6/PLAUR domain containing 6 [Homo sapiens]
Length = 171
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 13 IMYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPG 72
I K C CL S G + G + VC SCC +CN P P+ + A
Sbjct: 90 ISVTKRCVPLEECL--STGCRDSEHEG--HKVCTSCCEGNICNLPLPRNETDATFATTSP 145
Query: 73 LRTT 76
+ T
Sbjct: 146 INQT 149
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 19 CASS----AACLIASAGYQSFCSPGKLNSVC----ISCCNTPLCNG 56
CASS CL GY+ C PG S+C C P NG
Sbjct: 645 CASSPCDSGTCLDKIDGYECACEPGYTGSMCNINIDECAGNPCHNG 690
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 28.1 bits (61), Expect = 1.5
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 2 CQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVC----ISCCNTPLCNGP 57
C+ E+ E + C ++ C+ +Q C PG VC C +TP NG
Sbjct: 491 CELEINECQSN-----PCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGA 545
Query: 58 R 58
+
Sbjct: 546 K 546
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 15 YRKSCASSAACLIASAGYQSFCSPGKLNSVC----ISCCNTPLCNG 56
Y C + C+ GYQ C PG C C + P +G
Sbjct: 612 YSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCIHG 657
>gi|148727298 keratin associated protein 10-6 [Homo sapiens]
Length = 365
Score = 28.1 bits (61), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 18 SCASSAACL--IASAGYQSFCSPGKLNSVCISCCNTPLC 54
SC ++C+ ++S Q+ C P S C S C TP C
Sbjct: 171 SCCQQSSCVSCVSSPCCQAVCEPSPCQSGCTSSC-TPSC 208
>gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens]
Length = 207
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 17 KSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGLRTT 76
K CAS + C + S ++ C SCC +CN P ++ A+ RT+
Sbjct: 131 KKCASRSECHFVGCHH----SRDSEHTECRSCCEGMICNVELPTNHTNAVFAVMHAQRTS 186
>gi|4557679 jagged 1 precursor [Homo sapiens]
Length = 1218
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 19 CASSAACLIASAGYQSFCSPGKLNSVC----ISCCNTPLCNG 56
C + A+C GY+ C PG C C + P NG
Sbjct: 458 CQNDASCRDLVNGYRCICPPGYAGDHCERDIDECASNPCLNG 499
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 19 CASSAACLIASAGYQSFCSPGKLNSVCISCCNTP 52
CA A C+ GY+ C PG + C P
Sbjct: 829 CAFGATCVDEINGYRCVCPPGHSGAKCQEVSGRP 862
>gi|110735443 delta-like 1 [Homo sapiens]
Length = 723
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 19 CASSAACLIASAGYQSFCSPGKLNSVC----ISCCNTPLCNGPR 58
C + +C Y C PG +C ++C + P NG R
Sbjct: 337 CKNGGSCTDLENSYSCTCPPGFYGKICELSAMTCADGPCFNGGR 380
>gi|239752100 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 2 CQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCIS-CCNTPLCNG 56
CQ S + + + AC +S QS C P VC C P+C+G
Sbjct: 180 CQAACEPSSCTPLCCQQSSCQPACCTSSPSQQSCCVPVCCKPVCCKPVCCVPVCSG 235
>gi|239746604 PREDICTED: similar to Keratin-associated protein 10-8
[Homo sapiens]
Length = 312
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 2 CQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCIS-CCNTPLCNG 56
CQ S + + + AC +S QS C P VC C P+C+G
Sbjct: 180 CQAACEPSSCTPLCCQQSSCQPACCTSSPSQQSCCVPVCCKPVCCKPVCCVPVCSG 235
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 19 CASSAACLIASAGYQSFCSPG-------KLNSVCISCCNTPLCNGP 57
C A CL Y+ C G N C+ C +C+GP
Sbjct: 1018 CHPRATCLNTPLSYECHCQRGYQGDGISHCNRTCLEDCGHGVCSGP 1063
>gi|63053517 keratin associated protein 10-5 [Homo sapiens]
Length = 271
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 18 SCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGP 57
SC SS C Q+ C P S C S C TP C P
Sbjct: 45 SCVSSPCC-------QAACEPSPCQSGCTSSC-TPSCCQP 76
>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
Length = 1200
Score = 26.9 bits (58), Expect = 3.4
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 18 SCASSAACLIASAGYQSFCSPGKLNSVCI-----SCCNTPLCNGPRPKKRGSSASAL 69
+C++ C + ++ C PG S C SC P NG G+S S +
Sbjct: 682 TCSNGGTCYDSGDTFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCVGSGASFSCI 738
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 19 CASSAACLIASAGYQSFCSPGKLNSVC 45
CA A C+ GY+ C PG+ C
Sbjct: 798 CAYGATCVDEINGYRCSCPPGRAGPRC 824
>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
Length = 1238
Score = 26.9 bits (58), Expect = 3.4
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 18 SCASSAACLIASAGYQSFCSPGKLNSVCI-----SCCNTPLCNGPRPKKRGSSASAL 69
+C++ C + ++ C PG S C SC P NG G+S S +
Sbjct: 720 TCSNGGTCYDSGDTFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCVGSGASFSCI 776
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 19 CASSAACLIASAGYQSFCSPGKLNSVC 45
CA A C+ GY+ C PG+ C
Sbjct: 836 CAYGATCVDEINGYRCSCPPGRAGPRC 862
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.131 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,665,575
Number of Sequences: 37866
Number of extensions: 150758
Number of successful extensions: 814
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 135
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.