Guide to the Human Genome
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Name: MEGF8 Sequence: fasta or formatted (2778aa) NCBI GI: 145701025
Description:

multiple EGF-like-domains 8

Referenced in:

Epidermal Growth Factor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1        226           3
 C cysteine            7.0        195           2
 D aspartate           4.3        120           2
 E glutamate           4.5        125           2
 F phenylalanine       3.4         94           3
 G glycine            12.5        348           5
 H histidine           3.5         98           2
 I isoleucine          1.0         28           1
 K lysine              1.5         42           2
 L leucine             9.9        275           4
 M methionine          1.1         31           1
 N asparagine          2.6         71           2
 P proline             8.2        228           7
 Q glutamine           3.8        105           2
 R arginine            6.4        177           2
 S serine              7.9        219           4
 T threonine           5.0        139           2
 V valine              5.0        138           2
 W tryptophan          2.1         59           2
 Y tyrosine            2.2         60           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   multiple EGF-like-domains 8 
ATRNL1                0.033   attractin-like 1 
ATRN                  0.031   attractin isoform 2 
ATRN                  0.031   attractin isoform 1 
PEAR1                 0.012   platelet endothelial aggregation receptor 1 
MEGF11                0.012   multiple EGF-like-domains 11 
NELL1                 0.012   nel-like 1 isoform 1 precursor 
MEGF9                 0.011   multiple EGF-like-domains 9 
NOTCH3                0.011   Notch homolog 3 
MEGF10                0.011   multiple EGF-like-domains 10 
MEGF6                 0.011   EGF-like-domain, multiple 3 
LAMA1                 0.011   laminin, alpha 1 precursor 
LAMC2                 0.011   laminin, gamma 2 isoform b precursor 
LAMC2                 0.011   laminin, gamma 2 isoform a precursor 
FBN2                  0.010   fibrillin 2 precursor 
LAMB2                 0.010   laminin, beta 2 precursor 
LAMA5                 0.010   laminin alpha 5 
NELL1                 0.010   nel-like 1 isoform 2 precursor 
LAMA4                 0.010   laminin, alpha 4 isoform 1 precursor 
LAMA2                 0.010   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.010   laminin alpha 2 subunit isoform a precursor 
LAMC3                 0.010   laminin, gamma 3 precursor 
LAMB3                 0.010   laminin, beta 3 precursor 
LAMB3                 0.010   laminin, beta 3 precursor 
LAMB3                 0.010   laminin, beta 3 precursor 
CUBN                  0.010   cubilin 
HSPG2                 0.010   heparan sulfate proteoglycan 2 
FBN3                  0.010   fibrillin 3 precursor 
LAMB1                 0.009   laminin, beta 1 precursor 
LAMA3                 0.009   laminin alpha 3 subunit isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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