Guide to the Human Genome
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Name: LOC100130599 Sequence: fasta or formatted (312aa) NCBI GI: 239746604
Description:

PREDICTED: similar to Keratin-associated protein 10-8

Referenced in:

Keratins

Other entries for this name:
alt prot [312aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         26           2
 C cysteine           17.9         56           2
 D aspartate           1.9          6           2
 E glutamate           2.2          7           1
 F phenylalanine       1.0          3           1
 G glycine             2.9          9           2
 H histidine           1.6          5           1
 I isoleucine          0.6          2           1
 K lysine              1.9          6           1
 L leucine             6.4         20           2
 M methionine          1.0          3           1
 N asparagine          1.3          4           1
 P proline            13.5         42           3
 Q glutamine           7.1         22           2
 R arginine            3.8         12           2
 S serine             16.7         52           3
 T threonine           3.8         12           1
 V valine              5.4         17           1
 W tryptophan          1.9          6           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Keratin-associated protein 10... 
LOC100130599          0.994   PREDICTED: hypothetical protein 
KRTAP10-3             0.483   keratin associated protein 10-3 
KRTAP10-8             0.428   keratin associated protein 10-8 
KRTAP10-12            0.416   keratin associated protein 10-12 
KRTAP10-10            0.400   keratin associated protein 10-10 
KRTAP10-7             0.392   keratin associated protein 10-7 
KRTAP10-11            0.388   keratin associated protein 10-11 
KRTAP10-2             0.382   keratin associated protein 10-2 
KRTAP10-5             0.382   keratin associated protein 10-5 
KRTAP10-1             0.382   keratin associated protein 10-1 
KRTAP10-6             0.378   keratin associated protein 10-6 
KRTAP10-9             0.378   keratin associated protein 10-9 
KRTAP10-4             0.354   keratin associated protein 10-4 
KRTAP4-9              0.234   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.231   keratin associated protein 4-9 
KRTAP4-12             0.228   keratin associated protein 4-12 
KRTAP4-8              0.223   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.223   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-11             0.221   keratin associated protein 4-11 
KRTAP4-8              0.221   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.221   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-3              0.221   keratin associated protein 4-3 
KRTAP4-8              0.214   PREDICTED: keratin associated protein 4-8 
KRTAP4-9              0.212   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-8              0.204   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.204   PREDICTED: similar to keratin associated protein 4-...
LOC100131696          0.201   PREDICTED: keratin associated protein 
LOC100131696          0.201   PREDICTED: keratin associated protein 
LOC100288060          0.201   PREDICTED: hypothetical protein XP_002343557 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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