Guide to the Human Genome
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Name: LOC100288795 Sequence: fasta or formatted (302aa) NCBI GI: 239745682
Description:

PREDICTED: hypothetical protein XP_002343543

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         30           2
 C cysteine            2.3          7           1
 D aspartate           3.3         10           1
 E glutamate           3.6         11           1
 F phenylalanine       3.3         10           1
 G glycine             8.9         27           3
 H histidine           4.6         14           1
 I isoleucine          3.3         10           2
 K lysine              1.3          4           1
 L leucine             8.9         27           2
 M methionine          1.0          3           1
 N asparagine          0.3          1           1
 P proline            10.3         31           2
 Q glutamine           5.6         17           2
 R arginine            7.3         22           2
 S serine             10.9         33           3
 T threonine           6.3         19           2
 V valine              6.3         19           2
 W tryptophan          2.0          6           2
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343543 
LOC100293868          0.806   PREDICTED: hypothetical protein 
WHAMM                 0.018   WAS protein homolog associated with actin, golgi me...
ASAP3                 0.018   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
ASAP3                 0.018   ArfGAP with SH3 domain, ankyrin repeat and PH domain...
SASH1                 0.017   SAM and SH3 domain containing 1 
KIAA0355              0.017   hypothetical protein LOC9710 
APLP1                 0.017   amyloid precursor-like protein 1 isoform 1 precursor...
KDM6B                 0.015   lysine (K)-specific demethylase 6B 
FMN2                  0.015   formin 2 
TCERG1                0.015   transcription elongation regulator 1 isoform 1 [Homo...
LOC388279             0.015   PREDICTED: hypothetical protein 
MN1                   0.015   meningioma  1 
SUPT5H                0.015   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.015   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.015   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.015   suppressor of Ty 5 homolog isoform a 
RERE                  0.013   atrophin-1 like protein isoform b 
RERE                  0.013   atrophin-1 like protein isoform a 
RERE                  0.013   atrophin-1 like protein isoform a 
FLJ10404              0.013   hypothetical protein LOC54540 
BRSK1                 0.013   BR serine/threonine kinase 1 
SETD1B                0.012   SET domain containing 1B 
ZNF692                0.012   zinc finger protein 692 isoform 2 
ZNF692                0.012   zinc finger protein 692 isoform 1 
TCERG1                0.012   transcription elongation regulator 1 isoform 2 [Homo...
LYPD1                 0.012   LY6/PLAUR domain containing 1 isoform a 
BCL6B                 0.012   B-cell CLL/lymphoma 6, member B (zinc finger protein...
LYPD1                 0.012   LY6/PLAUR domain containing 1 isoform b 
FAM100A               0.012   hypothetical protein LOC124402 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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