Guide to the Human Genome
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Name: KRTAP1-1 Sequence: fasta or formatted (177aa) NCBI GI: 13569942
Description:

keratin associated protein 1-1

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.3          4           1
 C cysteine           25.4         45           3
 D aspartate           1.1          2           1
 E glutamate           4.0          7           1
 F phenylalanine       2.8          5           1
 G glycine            10.2         18           3
 H histidine           1.1          2           2
 I isoleucine          1.7          3           1
 K lysine              0.0          0           0
 L leucine             1.1          2           1
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline             8.5         15           2
 Q glutamine           6.2         11           1
 R arginine            4.0          7           1
 S serine             16.9         30           2
 T threonine           8.5         15           1
 V valine              2.8          5           2
 W tryptophan          0.6          1           1
 Y tyrosine            2.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 1-1 
KRTAP1-3              0.878   keratin associated protein 1-3 
KRTAP1-5              0.778   keratin associated protein 1.5 
KRTAP1-4              0.581   PREDICTED: keratin associated protein 1-4 
KRTAP1-4              0.581   PREDICTED: keratin associated protein 1-4 
KRTAP4-9              0.357   keratin associated protein 4-9 
KRTAP4-9              0.354   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-8              0.347   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.347   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-3              0.347   keratin associated protein 4-3 
KRTAP4-9              0.342   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-12             0.339   keratin associated protein 4-12 
KRTAP4-5              0.339   keratin associated protein 4-5 
KRTAP4-11             0.337   keratin associated protein 4-11 
KRTAP4-8              0.327   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.327   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.324   PREDICTED: keratin associated protein 4-8 
KRTAP4-4              0.309   keratin associated protein 4.4 
KRTAP4-8              0.304   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.304   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.304   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.304   keratin associated protein 4.8 
KRTAP9-2              0.302   keratin associated protein 9.2 
LOC728318             0.292   PREDICTED: hypothetical protein 
LOC728318             0.292   PREDICTED: hypothetical protein 
LOC728318             0.292   PREDICTED: hypothetical protein 
KRTAP9-8              0.284   keratin associated protein 9.8 
KRTAP9-3              0.279   keratin associated protein 9.3 
LOC728341             0.277   PREDICTED: keratin-associated protein 9-2-like 1-li...
KRTAP4-7              0.272   keratin associated protein 4-7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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