Guide to the Human Genome
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Name: KRTAP1-3 Sequence: fasta or formatted (167aa) NCBI GI: 13569940
Description:

keratin associated protein 1-3

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.8          3           1
 C cysteine           25.7         43           3
 D aspartate           0.6          1           1
 E glutamate           3.6          6           1
 F phenylalanine       2.4          4           1
 G glycine            10.2         17           3
 H histidine           1.2          2           2
 I isoleucine          1.8          3           1
 K lysine              0.0          0           0
 L leucine             1.2          2           1
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline             8.4         14           2
 Q glutamine           6.0         10           1
 R arginine            3.6          6           1
 S serine             17.4         29           3
 T threonine           9.6         16           1
 V valine              3.0          5           2
 W tryptophan          0.6          1           1
 Y tyrosine            2.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 1-3 
KRTAP1-1              0.931   keratin associated protein 1-1 
KRTAP1-5              0.873   keratin associated protein 1.5 
KRTAP1-4              0.630   PREDICTED: keratin associated protein 1-4 
KRTAP1-4              0.630   PREDICTED: keratin associated protein 1-4 
KRTAP4-9              0.368   keratin associated protein 4-9 
KRTAP4-9              0.365   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-8              0.362   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.362   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-9              0.362   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-12             0.360   keratin associated protein 4-12 
KRTAP4-11             0.357   keratin associated protein 4-11 
KRTAP4-3              0.357   keratin associated protein 4-3 
KRTAP4-8              0.349   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.349   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-5              0.347   keratin associated protein 4-5 
KRTAP4-8              0.341   PREDICTED: keratin associated protein 4-8 
KRTAP4-8              0.328   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.328   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.325   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.325   keratin associated protein 4.8 
KRTAP4-4              0.325   keratin associated protein 4.4 
KRTAP4-7              0.302   keratin associated protein 4-7 
KRTAP4-7              0.302   PREDICTED: keratin associated protein 4-7 
KRTAP9-8              0.299   keratin associated protein 9.8 
LOC728318             0.294   PREDICTED: hypothetical protein 
KRTAP4-2              0.294   keratin associated protein 4-2 
KRTAP9-2              0.294   keratin associated protein 9.2 
LOC728318             0.291   PREDICTED: hypothetical protein 
LOC728318             0.291   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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