Guide to the Human Genome
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Name: CRB2 Sequence: fasta or formatted (1285aa) NCBI GI: 112420992
Description:

crumbs homolog 2

Referenced in:

Epidermal Growth Factor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5        135           3
 C cysteine            8.5        109           1
 D aspartate           4.5         58           2
 E glutamate           5.4         69           2
 F phenylalanine       3.3         43           2
 G glycine            12.0        154           2
 H histidine           3.3         42           2
 I isoleucine          1.1         14           1
 K lysine              0.4          5           1
 L leucine            11.7        150           6
 M methionine          0.6          8           1
 N asparagine          1.9         24           1
 P proline             9.3        120           2
 Q glutamine           3.2         41           2
 R arginine            5.9         76           2
 S serine              5.9         76           2
 T threonine           4.7         61           2
 V valine              5.3         68           2
 W tryptophan          1.5         19           1
 Y tyrosine            1.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   crumbs homolog 2 
CRB1                  0.245   crumbs homolog 1 precursor 
NOTCH1                0.121   notch1 preproprotein 
NOTCH2                0.115   notch 2 preproprotein 
NOTCH3                0.113   Notch homolog 3 
NOTCH4                0.109   notch4 preproprotein 
JAG2                  0.103   jagged 2 isoform a precursor 
JAG1                  0.099   jagged 1 precursor 
JAG2                  0.096   jagged 2 isoform b precursor 
EYS                   0.090   eyes shut homolog isoform 1 
SNED1                 0.084   6720455I24Rik homolog 
DNER                  0.082   delta-notch-like EGF repeat-containing transmembran...
DLL1                  0.079   delta-like 1 
SVEP1                 0.075   polydom 
DLL4                  0.071   delta-like 4 protein precursor 
FAT4                  0.069   FAT tumor suppressor homolog 4 
SLIT2                 0.064   slit homolog 2 
SLIT3                 0.063   slit homolog 3 
CUBN                  0.057   cubilin 
LTBP4                 0.054   latent transforming growth factor beta binding prot...
LTBP4                 0.054   latent transforming growth factor beta binding prot...
LTBP4                 0.054   latent transforming growth factor beta binding prot...
SLIT1                 0.053   slit homolog 1 
DLL3                  0.053   delta-like 3 protein isoform 1 precursor 
DLL3                  0.053   delta-like 3 protein isoform 2 precursor 
DLK2                  0.052   EGF-like-domain, multiple 9 
DLK2                  0.052   EGF-like-domain, multiple 9 
DLK1                  0.048   delta-like 1 homolog 
LTBP3                 0.046   latent transforming growth factor beta binding prot...
LTBP3                 0.046   latent transforming growth factor beta binding prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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