Guide to the Human Genome
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Search of human proteins with 239742265

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo
sapiens]
         (154 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo ...   331   2e-91
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]                  35   0.019
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       35   0.025
gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo ...    34   0.043
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    34   0.057
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    34   0.057
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    34   0.057
gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...    33   0.074
gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo sap...    33   0.13 
gi|61966733 hypothetical protein LOC388199 [Homo sapiens]              33   0.13 
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   32   0.16 
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo...    32   0.28 
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ...    32   0.28 
gi|38683860 insulin receptor substrate 2 [Homo sapiens]                32   0.28 
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    32   0.28 
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    32   0.28 
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    32   0.28 
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]            31   0.37 
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ...    31   0.37 
gi|148612825 Rap GTPase interactor [Homo sapiens]                      31   0.37 
gi|57863314 vacuolar protein sorting 37C [Homo sapiens]                31   0.37 
gi|24308527 stereocilin [Homo sapiens]                                 31   0.48 
gi|154759255 collagen, type XXVIII precursor [Homo sapiens]            30   0.63 
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]    30   0.63 
gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]    30   0.63 
gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens]      30   0.63 
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       30   0.82 
gi|119943102 CREB binding protein isoform b [Homo sapiens]             30   0.82 
gi|119943104 CREB binding protein isoform a [Homo sapiens]             30   0.82 
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]       30   0.82 

>gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo
           sapiens]
          Length = 154

 Score =  331 bits (848), Expect = 2e-91
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MSVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGL 60
           MSVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGL
Sbjct: 1   MSVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGL 60

Query: 61  PARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQNEVHTASPLHPGGDDDF 120
           PARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQNEVHTASPLHPGGDDDF
Sbjct: 61  PARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQNEVHTASPLHPGGDDDF 120

Query: 121 LDDFGVARGLGNDNVDTWGQQSPVVTIWGCGQID 154
           LDDFGVARGLGNDNVDTWGQQSPVVTIWGCGQID
Sbjct: 121 LDDFGVARGLGNDNVDTWGQQSPVVTIWGCGQID 154


>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
          Length = 1499

 Score = 35.4 bits (80), Expect = 0.019
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 41   GAQRCEVGPPPGL----TPVGRGLPARPERVGLRGLPQRA-----GTSQWVVGPSPPQPM 91
            G Q     PPP +    TP+G  +P  P   G  G PQ +     G    +  P  P P 
Sbjct: 1162 GQQPLSHEPPPAMLPSPTPLGSNIPLHPNAQGTGGPPQNSMMMAPGGPDSLNAPCGPVPS 1221

Query: 92   NKVLGSHPQRLQNEVHTASPLHPGG 116
            +  +   P RLQ      +P   GG
Sbjct: 1222 SSQMMPFPPRLQQPHGAMAPTGGGG 1246



 Score = 28.5 bits (62), Expect = 2.4
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 27  LGPGLVLEQPAWPVGAQRCEVGPPPGLTP-------VGRGLPARP 64
           LGPG   + P           GPPPGL P        G G+P +P
Sbjct: 191 LGPGQTTQLPLSESSVPGAPHGPPPGLRPDAPGGGGGGGGVPGKP 235


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 35.0 bits (79), Expect = 0.025
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 26  VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78
           ++ PG+++E P  P G      GPP  + P G       RG P RP   G  GLP   GT
Sbjct: 460 IIEPGMLIEGPPGPEGPAGLP-GPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGT 518



 Score = 32.7 bits (73), Expect = 0.13
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 36   PAWPVGAQ-----RCEVG--PPPGLT-PVG-RGLPARPERVGLRGLPQRAGTSQWVVGPS 86
            PA P G Q     + E G   PPG T P+G +G P +P   GLRG+P   G       P 
Sbjct: 1397 PAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPG 1456

Query: 87   PPQP 90
            P  P
Sbjct: 1457 PDGP 1460



 Score = 30.0 bits (66), Expect = 0.82
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 47  VGPPPGLTPVGR-GLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKV 94
           +GPP    P+G+ GLP  P   G  G P + G      G  PP P   +
Sbjct: 738 IGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPI 786


>gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo
           sapiens]
          Length = 369

 Score = 34.3 bits (77), Expect = 0.043
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 17  WASVSTSWRVLGPGLVLEQP-AWPVGAQRCEVGPPPGLTPVGRGLPARPE--RVGLRGLP 73
           W+ V +  R  GP  VL  P A P+G       P PG +P G G P+ P   R+  R   
Sbjct: 251 WSPVPSGCRASGPSDVLLTPTADPMGLSPGVTCPAPGNSPEGLGQPSLPHKLRIKSRASG 310

Query: 74  QRAGTSQWVV 83
           +  G + W++
Sbjct: 311 RFEGQTYWLL 320


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 33.9 bits (76), Expect = 0.057
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 26  VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78
           V+ PG+++E P  P G     +GPP    P G       RG P RP   G  GLP   GT
Sbjct: 445 VVEPGMLVEGPPGPAGPAGI-MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGT 503


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
           sapiens]
          Length = 1767

 Score = 33.9 bits (76), Expect = 0.057
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 26  VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78
           V+ PG+++E P  P G     +GPP    P G       RG P RP   G  GLP   GT
Sbjct: 394 VVEPGMLVEGPPGPAGPAGI-MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGT 452


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
           sapiens]
          Length = 1806

 Score = 33.9 bits (76), Expect = 0.057
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 26  VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78
           V+ PG+++E P  P G     +GPP    P G       RG P RP   G  GLP   GT
Sbjct: 433 VVEPGMLVEGPPGPAGPAGI-MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGT 491


>gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
           3 [Homo sapiens]
          Length = 1544

 Score = 33.5 bits (75), Expect = 0.074
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 4   ADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGLPAR 63
           AD +++    + +W S  +  ++LGPGL+     W          P PGL   G GL  R
Sbjct: 772 ADSLEAWTSAVGKWFSPLSCHQLLGPGLLRLGRLWL--RSPSHTAPAPGLWLSGFGL-LR 828

Query: 64  PERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQ 103
            + + L   P          GP PP P + V   H +RLQ
Sbjct: 829 GDHLFLCSAP----------GPGPPAPEDMV---HLRRLQ 855


>gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo
           sapiens]
          Length = 373

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 25/118 (21%)

Query: 9   SQEPGMRRWAS-------VSTSWRVLGPGLVLEQP-----AWPVGAQRCEVG--PPPGLT 54
           S+E  +  WA+        +T W    P  + E P     A P+    CEV   P PGL 
Sbjct: 57  SREISLGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQPLANAVCEVQTVPGPGLR 116

Query: 55  PVGRGLPARPERVGLRGLPQRAGTSQ-----------WVVGPSPPQPMNKVLGSHPQR 101
           P G      P   G    P   G  Q              GPSPP P     G  P R
Sbjct: 117 PQGTPAMRAPSHKGTPPTPNPWGPEQPQNRHKHPKKGVTGGPSPPPPAASRYGQTPGR 174


>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
          Length = 402

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 25/118 (21%)

Query: 9   SQEPGMRRWAS-------VSTSWRVLGPGLVLEQP-----AWPVGAQRCEVG--PPPGLT 54
           S+E  +  WA+        +T W    P  + E P     A P+    CEV   P PGL 
Sbjct: 57  SREISLGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQPLANAVCEVQTVPGPGLR 116

Query: 55  PVGRGLPARPERVGLRGLPQRAGTSQ-----------WVVGPSPPQPMNKVLGSHPQR 101
           P G      P   G    P   G  Q              GPSPP P     G  P R
Sbjct: 117 PQGTPAMRAPSHKGTPPTPNPWGPEQPQNRHKHPKKGVTGGPSPPPPAASRYGQTPGR 174


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 32.3 bits (72), Expect = 0.16
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 15/68 (22%)

Query: 36  PAWPVGA--QRCEVGPP--PGLTPVGRGLPARPER---------VGLRGLPQRAGTSQWV 82
           P  P GA  +R  +GPP  PGL   G+GLP  P           +GLRG P  +G     
Sbjct: 93  PPGPKGAPGERGSLGPPGPPGLG--GKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLP 150

Query: 83  VGPSPPQP 90
             P PP P
Sbjct: 151 GPPGPPGP 158



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 46 EVGPP--PGLTPVGRGLPARPERVGLRGLPQRAGTSQWVVGPSPPQP 90
          E GPP  PG  P  +G P +P + G  GLP   G         PP P
Sbjct: 51 EAGPPGLPG-PPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGP 96


>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 12/72 (16%)

Query: 34  EQPAWPVGAQRCEVGPPPGLTPVGRG------LPARPERVGLRGLPQRAGTSQWVVGPSP 87
           E+P  PV       GP P   PV R       LPA P+      LP R+G      GP P
Sbjct: 363 ERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ------LPSRSGVDSPRSGPRP 416

Query: 88  PQPMNKVLGSHP 99
           P P ++     P
Sbjct: 417 PLPPDRPSAGAP 428


>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 12/72 (16%)

Query: 34  EQPAWPVGAQRCEVGPPPGLTPVGRG------LPARPERVGLRGLPQRAGTSQWVVGPSP 87
           E+P  PV       GP P   PV R       LPA P+      LP R+G      GP P
Sbjct: 363 ERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ------LPSRSGVDSPRSGPRP 416

Query: 88  PQPMNKVLGSHP 99
           P P ++     P
Sbjct: 417 PLPPDRPSAGAP 428


>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
          Length = 1338

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 12  PGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGLPARPERVGLRG 71
           PG  + AS   +     P  V+  P  P G      G P G     RG   RP R+ L G
Sbjct: 845 PGPSQAASAFGAGPTQPPHPVVPSPVRPSG------GRPEGFLGQ-RGRAVRPTRLSLEG 897

Query: 72  LPQRAGTSQWVVGPSPPQP 90
           LP      ++ + P P  P
Sbjct: 898 LPSLPSMHEYPLPPEPKSP 916


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%)

Query: 26  VLGPGLVLEQPAWPVGAQRCEVGPP-----PGLTPVG----RGLPARPERVGLRGLPQRA 76
           VL PG+++E P  P G     +GPP     PG  PVG    RG P R    G  G P   
Sbjct: 304 VLEPGMLVEGPPGPEGPAGL-IGPPGIQGNPG--PVGDPGERGPPGRAGLPGSDGAPGPP 360

Query: 77  GTS 79
           GTS
Sbjct: 361 GTS 363


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%)

Query: 26  VLGPGLVLEQPAWPVGAQRCEVGPP-----PGLTPVG----RGLPARPERVGLRGLPQRA 76
           VL PG+++E P  P G     +GPP     PG  PVG    RG P R    G  G P   
Sbjct: 283 VLEPGMLVEGPPGPEGPAGL-IGPPGIQGNPG--PVGDPGERGPPGRAGLPGSDGAPGPP 339

Query: 77  GTS 79
           GTS
Sbjct: 340 GTS 342


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
           [Homo sapiens]
          Length = 1736

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%)

Query: 26  VLGPGLVLEQPAWPVGAQRCEVGPP-----PGLTPVG----RGLPARPERVGLRGLPQRA 76
           VL PG+++E P  P G     +GPP     PG  PVG    RG P R    G  G P   
Sbjct: 390 VLEPGMLVEGPPGPEGPAGL-IGPPGIQGNPG--PVGDPGERGPPGRAGLPGSDGAPGPP 446

Query: 77  GTS 79
           GTS
Sbjct: 447 GTS 449


>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 242

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 48  GPPPGLT-PVGRGLPAR------PERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100
           GP PG   P+  GL  R      P+R GL      A  ++ VVGPSPP P  ++      
Sbjct: 153 GPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSES 212

Query: 101 RL 102
           RL
Sbjct: 213 RL 214


>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
           sapiens]
          Length = 242

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 48  GPPPGLT-PVGRGLPAR------PERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100
           GP PG   P+  GL  R      P+R GL      A  ++ VVGPSPP P  ++      
Sbjct: 153 GPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSES 212

Query: 101 RL 102
           RL
Sbjct: 213 RL 214


>gi|148612825 Rap GTPase interactor [Homo sapiens]
          Length = 1075

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 32  VLEQPAWPVGAQRCEVGPPPGLTPVGRGLPARPERVGLRGLPQRA--GTSQWVVGPSPPQ 89
           +L  P+ P+G +  +   P    P G+ LP R +R GL GL   A  G S  +   SPP 
Sbjct: 902 LLTPPSTPLGPEPGDPDWPESGGPCGKALPER-QRNGLSGLRGAAPEGDSAALAEESPPA 960

Query: 90  PMNK 93
           P ++
Sbjct: 961 PSSR 964


>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
          Length = 355

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 49  PPPGL--TPVGRGLPARPERVGLRGLPQRAGTSQW-VVGPSPPQPMNKVLGSHPQRLQNE 105
           P PG   TP+G   P  P R G    P     S +   G  PP P+   L S P + Q  
Sbjct: 268 PRPGYPGTPMGASGPGYPLRGGRAPSPGYPQQSPYPATGGKPPYPIQPQLPSFPGQPQPS 327

Query: 106 VHTASPLHPG 115
           V    P  PG
Sbjct: 328 VPLQPPYPPG 337


>gi|24308527 stereocilin [Homo sapiens]
          Length = 1775

 Score = 30.8 bits (68), Expect = 0.48
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 2   SVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWP 39
           SV   I+   PGMR     + + R+L P L  E PAWP
Sbjct: 826 SVLAAIRDYSPGMRPEQKEALAKRLLAPELFGEVPAWP 863


>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
          Length = 1125

 Score = 30.4 bits (67), Expect = 0.63
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 33  LEQPAWPVGAQRCEVGPPPGLTPVGRGLPARPERVGLRGLPQRAGTSQWVV----GPSPP 88
           ++ P  PVGA   +    PG+ P  RGLP  P  +GLRG+       +  V    GPS P
Sbjct: 622 VQGPRGPVGAPGLKGDGYPGV-PGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGP 680

Query: 89  Q 89
           +
Sbjct: 681 R 681


>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
          Length = 166

 Score = 30.4 bits (67), Expect = 0.63
 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 49  PPPGLTPVG---RGLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100
           PPP   P G   +G   RP R   +G PQ+ G  Q   GP PP P  K  G  PQ
Sbjct: 102 PPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---GPPPPPP-GKPQGPPPQ 152


>gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
          Length = 166

 Score = 30.4 bits (67), Expect = 0.63
 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 49  PPPGLTPVG---RGLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100
           PPP   P G   +G   RP R   +G PQ+ G  Q   GP PP P  K  G  PQ
Sbjct: 102 PPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---GPPPPPP-GKPQGPPPQ 152


>gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
          Length = 166

 Score = 30.4 bits (67), Expect = 0.63
 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 49  PPPGLTPVG---RGLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100
           PPP   P G   +G   RP R   +G PQ+ G  Q   GP PP P  K  G  PQ
Sbjct: 102 PPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---GPPPPPP-GKPQGPPPQ 152


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 30.0 bits (66), Expect = 0.82
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 33  LEQPAWPVGAQRCE-----VGPPPGLTPVG-RGLPARPERVGLRGLPQRAGTSQWVVGPS 86
           LE P   VGA   +      GP   + P+G RG+P    R+G +G P + G       P 
Sbjct: 307 LEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPG 366

Query: 87  PPQPM 91
           P  P+
Sbjct: 367 PMGPL 371


>gi|119943102 CREB binding protein isoform b [Homo sapiens]
          Length = 2404

 Score = 30.0 bits (66), Expect = 0.82
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 67  VGLRGLPQRAGTSQWVV-GPSPPQPMNKVLGSHPQRLQNEVHTASPLHP 114
           VG+   P + G SQ  V G + P P+N +LG    +L     T SPLHP
Sbjct: 770 VGMGQPPAQTGVSQGQVPGAALPNPLN-MLGPQASQLPCPPVTQSPLHP 817


>gi|119943104 CREB binding protein isoform a [Homo sapiens]
          Length = 2442

 Score = 30.0 bits (66), Expect = 0.82
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 67  VGLRGLPQRAGTSQWVV-GPSPPQPMNKVLGSHPQRLQNEVHTASPLHP 114
           VG+   P + G SQ  V G + P P+N +LG    +L     T SPLHP
Sbjct: 808 VGMGQPPAQTGVSQGQVPGAALPNPLN-MLGPQASQLPCPPVTQSPLHP 855


>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
          Length = 957

 Score = 30.0 bits (66), Expect = 0.82
 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 51  PGLTPVGRGLPARPERVGLRGLPQRAGT--SQWVVGPSPPQPMNKVLGSHPQRLQNEVHT 108
           PGL     G+P RP   GL+GLP R G   SQ    P    P        P  +  E   
Sbjct: 854 PGLV----GVPGRPGVRGLKGLPGRNGEKGSQGFGYPGEQGPPGPPGPEGPPGISKEGPP 909

Query: 109 ASPLHPGGDDD 119
             P  PG D D
Sbjct: 910 GDPGLPGKDGD 920



 Score = 26.9 bits (58), Expect = 6.9
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 48  GPPPGLTPVG-RGLPARPERVGLRGL---PQRAG 77
           GPP  + P G RGLP  P R G+ GL   P R G
Sbjct: 831 GPPGPIGPEGPRGLPGLPGRDGVPGLVGVPGRPG 864


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.138    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,634,571
Number of Sequences: 37866
Number of extensions: 557484
Number of successful extensions: 1671
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 1483
Number of HSP's gapped (non-prelim): 380
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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