BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo sapiens] (154 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo ... 331 2e-91 gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 35 0.019 gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.025 gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo ... 34 0.043 gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 34 0.057 gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 34 0.057 gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 34 0.057 gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 33 0.074 gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo sap... 33 0.13 gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 33 0.13 gi|119508426 alpha 3 type IX collagen [Homo sapiens] 32 0.16 gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 32 0.28 gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 32 0.28 gi|38683860 insulin receptor substrate 2 [Homo sapiens] 32 0.28 gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 32 0.28 gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 32 0.28 gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 32 0.28 gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] 31 0.37 gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ... 31 0.37 gi|148612825 Rap GTPase interactor [Homo sapiens] 31 0.37 gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 31 0.37 gi|24308527 stereocilin [Homo sapiens] 31 0.48 gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 30 0.63 gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 30 0.63 gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 30 0.63 gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 30 0.63 gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 30 0.82 gi|119943102 CREB binding protein isoform b [Homo sapiens] 30 0.82 gi|119943104 CREB binding protein isoform a [Homo sapiens] 30 0.82 gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 30 0.82 >gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo sapiens] Length = 154 Score = 331 bits (848), Expect = 2e-91 Identities = 154/154 (100%), Positives = 154/154 (100%) Query: 1 MSVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGL 60 MSVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGL Sbjct: 1 MSVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGL 60 Query: 61 PARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQNEVHTASPLHPGGDDDF 120 PARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQNEVHTASPLHPGGDDDF Sbjct: 61 PARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQNEVHTASPLHPGGDDDF 120 Query: 121 LDDFGVARGLGNDNVDTWGQQSPVVTIWGCGQID 154 LDDFGVARGLGNDNVDTWGQQSPVVTIWGCGQID Sbjct: 121 LDDFGVARGLGNDNVDTWGQQSPVVTIWGCGQID 154 >gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] Length = 1499 Score = 35.4 bits (80), Expect = 0.019 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 41 GAQRCEVGPPPGL----TPVGRGLPARPERVGLRGLPQRA-----GTSQWVVGPSPPQPM 91 G Q PPP + TP+G +P P G G PQ + G + P P P Sbjct: 1162 GQQPLSHEPPPAMLPSPTPLGSNIPLHPNAQGTGGPPQNSMMMAPGGPDSLNAPCGPVPS 1221 Query: 92 NKVLGSHPQRLQNEVHTASPLHPGG 116 + + P RLQ +P GG Sbjct: 1222 SSQMMPFPPRLQQPHGAMAPTGGGG 1246 Score = 28.5 bits (62), Expect = 2.4 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 7/45 (15%) Query: 27 LGPGLVLEQPAWPVGAQRCEVGPPPGLTP-------VGRGLPARP 64 LGPG + P GPPPGL P G G+P +P Sbjct: 191 LGPGQTTQLPLSESSVPGAPHGPPPGLRPDAPGGGGGGGGVPGKP 235 >gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] Length = 1838 Score = 35.0 bits (79), Expect = 0.025 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78 ++ PG+++E P P G GPP + P G RG P RP G GLP GT Sbjct: 460 IIEPGMLIEGPPGPEGPAGLP-GPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGT 518 Score = 32.7 bits (73), Expect = 0.13 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 9/64 (14%) Query: 36 PAWPVGAQ-----RCEVG--PPPGLT-PVG-RGLPARPERVGLRGLPQRAGTSQWVVGPS 86 PA P G Q + E G PPG T P+G +G P +P GLRG+P G P Sbjct: 1397 PAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPG 1456 Query: 87 PPQP 90 P P Sbjct: 1457 PDGP 1460 Score = 30.0 bits (66), Expect = 0.82 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 47 VGPPPGLTPVGR-GLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKV 94 +GPP P+G+ GLP P G G P + G G PP P + Sbjct: 738 IGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPI 786 >gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo sapiens] Length = 369 Score = 34.3 bits (77), Expect = 0.043 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Query: 17 WASVSTSWRVLGPGLVLEQP-AWPVGAQRCEVGPPPGLTPVGRGLPARPE--RVGLRGLP 73 W+ V + R GP VL P A P+G P PG +P G G P+ P R+ R Sbjct: 251 WSPVPSGCRASGPSDVLLTPTADPMGLSPGVTCPAPGNSPEGLGQPSLPHKLRIKSRASG 310 Query: 74 QRAGTSQWVV 83 + G + W++ Sbjct: 311 RFEGQTYWLL 320 >gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo sapiens] Length = 1818 Score = 33.9 bits (76), Expect = 0.057 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78 V+ PG+++E P P G +GPP P G RG P RP G GLP GT Sbjct: 445 VVEPGMLVEGPPGPAGPAGI-MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGT 503 >gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo sapiens] Length = 1767 Score = 33.9 bits (76), Expect = 0.057 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78 V+ PG+++E P P G +GPP P G RG P RP G GLP GT Sbjct: 394 VVEPGMLVEGPPGPAGPAGI-MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGT 452 >gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo sapiens] Length = 1806 Score = 33.9 bits (76), Expect = 0.057 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78 V+ PG+++E P P G +GPP P G RG P RP G GLP GT Sbjct: 433 VVEPGMLVEGPPGPAGPAGI-MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGT 491 >gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 [Homo sapiens] Length = 1544 Score = 33.5 bits (75), Expect = 0.074 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 16/100 (16%) Query: 4 ADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGLPAR 63 AD +++ + +W S + ++LGPGL+ W P PGL G GL R Sbjct: 772 ADSLEAWTSAVGKWFSPLSCHQLLGPGLLRLGRLWL--RSPSHTAPAPGLWLSGFGL-LR 828 Query: 64 PERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQ 103 + + L P GP PP P + V H +RLQ Sbjct: 829 GDHLFLCSAP----------GPGPPAPEDMV---HLRRLQ 855 >gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo sapiens] Length = 373 Score = 32.7 bits (73), Expect = 0.13 Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 25/118 (21%) Query: 9 SQEPGMRRWAS-------VSTSWRVLGPGLVLEQP-----AWPVGAQRCEVG--PPPGLT 54 S+E + WA+ +T W P + E P A P+ CEV P PGL Sbjct: 57 SREISLGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQPLANAVCEVQTVPGPGLR 116 Query: 55 PVGRGLPARPERVGLRGLPQRAGTSQ-----------WVVGPSPPQPMNKVLGSHPQR 101 P G P G P G Q GPSPP P G P R Sbjct: 117 PQGTPAMRAPSHKGTPPTPNPWGPEQPQNRHKHPKKGVTGGPSPPPPAASRYGQTPGR 174 >gi|61966733 hypothetical protein LOC388199 [Homo sapiens] Length = 402 Score = 32.7 bits (73), Expect = 0.13 Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 25/118 (21%) Query: 9 SQEPGMRRWAS-------VSTSWRVLGPGLVLEQP-----AWPVGAQRCEVG--PPPGLT 54 S+E + WA+ +T W P + E P A P+ CEV P PGL Sbjct: 57 SREISLGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQPLANAVCEVQTVPGPGLR 116 Query: 55 PVGRGLPARPERVGLRGLPQRAGTSQ-----------WVVGPSPPQPMNKVLGSHPQR 101 P G P G P G Q GPSPP P G P R Sbjct: 117 PQGTPAMRAPSHKGTPPTPNPWGPEQPQNRHKHPKKGVTGGPSPPPPAASRYGQTPGR 174 >gi|119508426 alpha 3 type IX collagen [Homo sapiens] Length = 684 Score = 32.3 bits (72), Expect = 0.16 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 15/68 (22%) Query: 36 PAWPVGA--QRCEVGPP--PGLTPVGRGLPARPER---------VGLRGLPQRAGTSQWV 82 P P GA +R +GPP PGL G+GLP P +GLRG P +G Sbjct: 93 PPGPKGAPGERGSLGPPGPPGLG--GKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLP 150 Query: 83 VGPSPPQP 90 P PP P Sbjct: 151 GPPGPPGP 158 Score = 29.3 bits (64), Expect = 1.4 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 46 EVGPP--PGLTPVGRGLPARPERVGLRGLPQRAGTSQWVVGPSPPQP 90 E GPP PG P +G P +P + G GLP G PP P Sbjct: 51 EAGPPGLPG-PPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGP 96 >gi|116284398 WAS/WASL interacting protein family, member 1 [Homo sapiens] Length = 503 Score = 31.6 bits (70), Expect = 0.28 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 12/72 (16%) Query: 34 EQPAWPVGAQRCEVGPPPGLTPVGRG------LPARPERVGLRGLPQRAGTSQWVVGPSP 87 E+P PV GP P PV R LPA P+ LP R+G GP P Sbjct: 363 ERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ------LPSRSGVDSPRSGPRP 416 Query: 88 PQPMNKVLGSHP 99 P P ++ P Sbjct: 417 PLPPDRPSAGAP 428 >gi|38373695 WAS/WASL interacting protein family, member 1 [Homo sapiens] Length = 503 Score = 31.6 bits (70), Expect = 0.28 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 12/72 (16%) Query: 34 EQPAWPVGAQRCEVGPPPGLTPVGRG------LPARPERVGLRGLPQRAGTSQWVVGPSP 87 E+P PV GP P PV R LPA P+ LP R+G GP P Sbjct: 363 ERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ------LPSRSGVDSPRSGPRP 416 Query: 88 PQPMNKVLGSHP 99 P P ++ P Sbjct: 417 PLPPDRPSAGAP 428 >gi|38683860 insulin receptor substrate 2 [Homo sapiens] Length = 1338 Score = 31.6 bits (70), Expect = 0.28 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 7/79 (8%) Query: 12 PGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGLPARPERVGLRG 71 PG + AS + P V+ P P G G P G RG RP R+ L G Sbjct: 845 PGPSQAASAFGAGPTQPPHPVVPSPVRPSG------GRPEGFLGQ-RGRAVRPTRLSLEG 897 Query: 72 LPQRAGTSQWVVGPSPPQP 90 LP ++ + P P P Sbjct: 898 LPSLPSMHEYPLPPEPKSP 916 >gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo sapiens] Length = 1650 Score = 31.6 bits (70), Expect = 0.28 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%) Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPP-----PGLTPVG----RGLPARPERVGLRGLPQRA 76 VL PG+++E P P G +GPP PG PVG RG P R G G P Sbjct: 304 VLEPGMLVEGPPGPEGPAGL-IGPPGIQGNPG--PVGDPGERGPPGRAGLPGSDGAPGPP 360 Query: 77 GTS 79 GTS Sbjct: 361 GTS 363 >gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo sapiens] Length = 1629 Score = 31.6 bits (70), Expect = 0.28 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%) Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPP-----PGLTPVG----RGLPARPERVGLRGLPQRA 76 VL PG+++E P P G +GPP PG PVG RG P R G G P Sbjct: 283 VLEPGMLVEGPPGPEGPAGL-IGPPGIQGNPG--PVGDPGERGPPGRAGLPGSDGAPGPP 339 Query: 77 GTS 79 GTS Sbjct: 340 GTS 342 >gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo sapiens] Length = 1736 Score = 31.6 bits (70), Expect = 0.28 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%) Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPP-----PGLTPVG----RGLPARPERVGLRGLPQRA 76 VL PG+++E P P G +GPP PG PVG RG P R G G P Sbjct: 390 VLEPGMLVEGPPGPEGPAGL-IGPPGIQGNPG--PVGDPGERGPPGRAGLPGSDGAPGPP 446 Query: 77 GTS 79 GTS Sbjct: 447 GTS 449 >gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] Length = 242 Score = 31.2 bits (69), Expect = 0.37 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%) Query: 48 GPPPGLT-PVGRGLPAR------PERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100 GP PG P+ GL R P+R GL A ++ VVGPSPP P ++ Sbjct: 153 GPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSES 212 Query: 101 RL 102 RL Sbjct: 213 RL 214 >gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo sapiens] Length = 242 Score = 31.2 bits (69), Expect = 0.37 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%) Query: 48 GPPPGLT-PVGRGLPAR------PERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100 GP PG P+ GL R P+R GL A ++ VVGPSPP P ++ Sbjct: 153 GPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSES 212 Query: 101 RL 102 RL Sbjct: 213 RL 214 >gi|148612825 Rap GTPase interactor [Homo sapiens] Length = 1075 Score = 31.2 bits (69), Expect = 0.37 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 32 VLEQPAWPVGAQRCEVGPPPGLTPVGRGLPARPERVGLRGLPQRA--GTSQWVVGPSPPQ 89 +L P+ P+G + + P P G+ LP R +R GL GL A G S + SPP Sbjct: 902 LLTPPSTPLGPEPGDPDWPESGGPCGKALPER-QRNGLSGLRGAAPEGDSAALAEESPPA 960 Query: 90 PMNK 93 P ++ Sbjct: 961 PSSR 964 >gi|57863314 vacuolar protein sorting 37C [Homo sapiens] Length = 355 Score = 31.2 bits (69), Expect = 0.37 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 49 PPPGL--TPVGRGLPARPERVGLRGLPQRAGTSQW-VVGPSPPQPMNKVLGSHPQRLQNE 105 P PG TP+G P P R G P S + G PP P+ L S P + Q Sbjct: 268 PRPGYPGTPMGASGPGYPLRGGRAPSPGYPQQSPYPATGGKPPYPIQPQLPSFPGQPQPS 327 Query: 106 VHTASPLHPG 115 V P PG Sbjct: 328 VPLQPPYPPG 337 >gi|24308527 stereocilin [Homo sapiens] Length = 1775 Score = 30.8 bits (68), Expect = 0.48 Identities = 16/38 (42%), Positives = 20/38 (52%) Query: 2 SVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWP 39 SV I+ PGMR + + R+L P L E PAWP Sbjct: 826 SVLAAIRDYSPGMRPEQKEALAKRLLAPELFGEVPAWP 863 >gi|154759255 collagen, type XXVIII precursor [Homo sapiens] Length = 1125 Score = 30.4 bits (67), Expect = 0.63 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 33 LEQPAWPVGAQRCEVGPPPGLTPVGRGLPARPERVGLRGLPQRAGTSQWVV----GPSPP 88 ++ P PVGA + PG+ P RGLP P +GLRG+ + V GPS P Sbjct: 622 VQGPRGPVGAPGLKGDGYPGV-PGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGP 680 Query: 89 Q 89 + Sbjct: 681 R 681 >gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] Length = 166 Score = 30.4 bits (67), Expect = 0.63 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Query: 49 PPPGLTPVG---RGLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100 PPP P G +G RP R +G PQ+ G Q GP PP P K G PQ Sbjct: 102 PPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---GPPPPPP-GKPQGPPPQ 152 >gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens] Length = 166 Score = 30.4 bits (67), Expect = 0.63 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Query: 49 PPPGLTPVG---RGLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100 PPP P G +G RP R +G PQ+ G Q GP PP P K G PQ Sbjct: 102 PPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---GPPPPPP-GKPQGPPPQ 152 >gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens] Length = 166 Score = 30.4 bits (67), Expect = 0.63 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Query: 49 PPPGLTPVG---RGLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100 PPP P G +G RP R +G PQ+ G Q GP PP P K G PQ Sbjct: 102 PPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---GPPPPPP-GKPQGPPPQ 152 >gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] Length = 1499 Score = 30.0 bits (66), Expect = 0.82 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 33 LEQPAWPVGAQRCE-----VGPPPGLTPVG-RGLPARPERVGLRGLPQRAGTSQWVVGPS 86 LE P VGA + GP + P+G RG+P R+G +G P + G P Sbjct: 307 LEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPG 366 Query: 87 PPQPM 91 P P+ Sbjct: 367 PMGPL 371 >gi|119943102 CREB binding protein isoform b [Homo sapiens] Length = 2404 Score = 30.0 bits (66), Expect = 0.82 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 67 VGLRGLPQRAGTSQWVV-GPSPPQPMNKVLGSHPQRLQNEVHTASPLHP 114 VG+ P + G SQ V G + P P+N +LG +L T SPLHP Sbjct: 770 VGMGQPPAQTGVSQGQVPGAALPNPLN-MLGPQASQLPCPPVTQSPLHP 817 >gi|119943104 CREB binding protein isoform a [Homo sapiens] Length = 2442 Score = 30.0 bits (66), Expect = 0.82 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 67 VGLRGLPQRAGTSQWVV-GPSPPQPMNKVLGSHPQRLQNEVHTASPLHP 114 VG+ P + G SQ V G + P P+N +LG +L T SPLHP Sbjct: 808 VGMGQPPAQTGVSQGQVPGAALPNPLN-MLGPQASQLPCPPVTQSPLHP 855 >gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] Length = 957 Score = 30.0 bits (66), Expect = 0.82 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 51 PGLTPVGRGLPARPERVGLRGLPQRAGT--SQWVVGPSPPQPMNKVLGSHPQRLQNEVHT 108 PGL G+P RP GL+GLP R G SQ P P P + E Sbjct: 854 PGLV----GVPGRPGVRGLKGLPGRNGEKGSQGFGYPGEQGPPGPPGPEGPPGISKEGPP 909 Query: 109 ASPLHPGGDDD 119 P PG D D Sbjct: 910 GDPGLPGKDGD 920 Score = 26.9 bits (58), Expect = 6.9 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Query: 48 GPPPGLTPVG-RGLPARPERVGLRGL---PQRAG 77 GPP + P G RGLP P R G+ GL P R G Sbjct: 831 GPPGPIGPEGPRGLPGLPGRDGVPGLVGVPGRPG 864 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.138 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,634,571 Number of Sequences: 37866 Number of extensions: 557484 Number of successful extensions: 1671 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 175 Number of HSP's that attempted gapping in prelim test: 1483 Number of HSP's gapped (non-prelim): 380 length of query: 154 length of database: 18,247,518 effective HSP length: 93 effective length of query: 61 effective length of database: 14,725,980 effective search space: 898284780 effective search space used: 898284780 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.