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Search of human proteins with 239742265
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo
sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo ... 331 2e-91
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 35 0.019
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.025
gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo ... 34 0.043
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 34 0.057
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 34 0.057
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 34 0.057
gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 33 0.074
gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo sap... 33 0.13
gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 33 0.13
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 32 0.16
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 32 0.28
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 32 0.28
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 32 0.28
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 32 0.28
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 32 0.28
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 32 0.28
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] 31 0.37
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ... 31 0.37
gi|148612825 Rap GTPase interactor [Homo sapiens] 31 0.37
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 31 0.37
gi|24308527 stereocilin [Homo sapiens] 31 0.48
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 30 0.63
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 30 0.63
gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 30 0.63
gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 30 0.63
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 30 0.82
gi|119943102 CREB binding protein isoform b [Homo sapiens] 30 0.82
gi|119943104 CREB binding protein isoform a [Homo sapiens] 30 0.82
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 30 0.82
>gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo
sapiens]
Length = 154
Score = 331 bits (848), Expect = 2e-91
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MSVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGL 60
MSVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGL
Sbjct: 1 MSVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGL 60
Query: 61 PARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQNEVHTASPLHPGGDDDF 120
PARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQNEVHTASPLHPGGDDDF
Sbjct: 61 PARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQNEVHTASPLHPGGDDDF 120
Query: 121 LDDFGVARGLGNDNVDTWGQQSPVVTIWGCGQID 154
LDDFGVARGLGNDNVDTWGQQSPVVTIWGCGQID
Sbjct: 121 LDDFGVARGLGNDNVDTWGQQSPVVTIWGCGQID 154
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 35.4 bits (80), Expect = 0.019
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 41 GAQRCEVGPPPGL----TPVGRGLPARPERVGLRGLPQRA-----GTSQWVVGPSPPQPM 91
G Q PPP + TP+G +P P G G PQ + G + P P P
Sbjct: 1162 GQQPLSHEPPPAMLPSPTPLGSNIPLHPNAQGTGGPPQNSMMMAPGGPDSLNAPCGPVPS 1221
Query: 92 NKVLGSHPQRLQNEVHTASPLHPGG 116
+ + P RLQ +P GG
Sbjct: 1222 SSQMMPFPPRLQQPHGAMAPTGGGG 1246
Score = 28.5 bits (62), Expect = 2.4
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 27 LGPGLVLEQPAWPVGAQRCEVGPPPGLTP-------VGRGLPARP 64
LGPG + P GPPPGL P G G+P +P
Sbjct: 191 LGPGQTTQLPLSESSVPGAPHGPPPGLRPDAPGGGGGGGGVPGKP 235
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.0 bits (79), Expect = 0.025
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78
++ PG+++E P P G GPP + P G RG P RP G GLP GT
Sbjct: 460 IIEPGMLIEGPPGPEGPAGLP-GPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGT 518
Score = 32.7 bits (73), Expect = 0.13
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 36 PAWPVGAQ-----RCEVG--PPPGLT-PVG-RGLPARPERVGLRGLPQRAGTSQWVVGPS 86
PA P G Q + E G PPG T P+G +G P +P GLRG+P G P
Sbjct: 1397 PAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPG 1456
Query: 87 PPQP 90
P P
Sbjct: 1457 PDGP 1460
Score = 30.0 bits (66), Expect = 0.82
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 47 VGPPPGLTPVGR-GLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKV 94
+GPP P+G+ GLP P G G P + G G PP P +
Sbjct: 738 IGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPI 786
>gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo
sapiens]
Length = 369
Score = 34.3 bits (77), Expect = 0.043
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 17 WASVSTSWRVLGPGLVLEQP-AWPVGAQRCEVGPPPGLTPVGRGLPARPE--RVGLRGLP 73
W+ V + R GP VL P A P+G P PG +P G G P+ P R+ R
Sbjct: 251 WSPVPSGCRASGPSDVLLTPTADPMGLSPGVTCPAPGNSPEGLGQPSLPHKLRIKSRASG 310
Query: 74 QRAGTSQWVV 83
+ G + W++
Sbjct: 311 RFEGQTYWLL 320
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 33.9 bits (76), Expect = 0.057
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78
V+ PG+++E P P G +GPP P G RG P RP G GLP GT
Sbjct: 445 VVEPGMLVEGPPGPAGPAGI-MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGT 503
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 33.9 bits (76), Expect = 0.057
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78
V+ PG+++E P P G +GPP P G RG P RP G GLP GT
Sbjct: 394 VVEPGMLVEGPPGPAGPAGI-MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGT 452
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 33.9 bits (76), Expect = 0.057
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVG-------RGLPARPERVGLRGLPQRAGT 78
V+ PG+++E P P G +GPP P G RG P RP G GLP GT
Sbjct: 433 VVEPGMLVEGPPGPAGPAGI-MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGT 491
>gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
3 [Homo sapiens]
Length = 1544
Score = 33.5 bits (75), Expect = 0.074
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 4 ADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGLPAR 63
AD +++ + +W S + ++LGPGL+ W P PGL G GL R
Sbjct: 772 ADSLEAWTSAVGKWFSPLSCHQLLGPGLLRLGRLWL--RSPSHTAPAPGLWLSGFGL-LR 828
Query: 64 PERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQRLQ 103
+ + L P GP PP P + V H +RLQ
Sbjct: 829 GDHLFLCSAP----------GPGPPAPEDMV---HLRRLQ 855
>gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo
sapiens]
Length = 373
Score = 32.7 bits (73), Expect = 0.13
Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 25/118 (21%)
Query: 9 SQEPGMRRWAS-------VSTSWRVLGPGLVLEQP-----AWPVGAQRCEVG--PPPGLT 54
S+E + WA+ +T W P + E P A P+ CEV P PGL
Sbjct: 57 SREISLGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQPLANAVCEVQTVPGPGLR 116
Query: 55 PVGRGLPARPERVGLRGLPQRAGTSQ-----------WVVGPSPPQPMNKVLGSHPQR 101
P G P G P G Q GPSPP P G P R
Sbjct: 117 PQGTPAMRAPSHKGTPPTPNPWGPEQPQNRHKHPKKGVTGGPSPPPPAASRYGQTPGR 174
>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
Length = 402
Score = 32.7 bits (73), Expect = 0.13
Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 25/118 (21%)
Query: 9 SQEPGMRRWAS-------VSTSWRVLGPGLVLEQP-----AWPVGAQRCEVG--PPPGLT 54
S+E + WA+ +T W P + E P A P+ CEV P PGL
Sbjct: 57 SREISLGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQPLANAVCEVQTVPGPGLR 116
Query: 55 PVGRGLPARPERVGLRGLPQRAGTSQ-----------WVVGPSPPQPMNKVLGSHPQR 101
P G P G P G Q GPSPP P G P R
Sbjct: 117 PQGTPAMRAPSHKGTPPTPNPWGPEQPQNRHKHPKKGVTGGPSPPPPAASRYGQTPGR 174
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 32.3 bits (72), Expect = 0.16
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 15/68 (22%)
Query: 36 PAWPVGA--QRCEVGPP--PGLTPVGRGLPARPER---------VGLRGLPQRAGTSQWV 82
P P GA +R +GPP PGL G+GLP P +GLRG P +G
Sbjct: 93 PPGPKGAPGERGSLGPPGPPGLG--GKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLP 150
Query: 83 VGPSPPQP 90
P PP P
Sbjct: 151 GPPGPPGP 158
Score = 29.3 bits (64), Expect = 1.4
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 46 EVGPP--PGLTPVGRGLPARPERVGLRGLPQRAGTSQWVVGPSPPQP 90
E GPP PG P +G P +P + G GLP G PP P
Sbjct: 51 EAGPPGLPG-PPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGP 96
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 31.6 bits (70), Expect = 0.28
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 34 EQPAWPVGAQRCEVGPPPGLTPVGRG------LPARPERVGLRGLPQRAGTSQWVVGPSP 87
E+P PV GP P PV R LPA P+ LP R+G GP P
Sbjct: 363 ERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ------LPSRSGVDSPRSGPRP 416
Query: 88 PQPMNKVLGSHP 99
P P ++ P
Sbjct: 417 PLPPDRPSAGAP 428
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 31.6 bits (70), Expect = 0.28
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 34 EQPAWPVGAQRCEVGPPPGLTPVGRG------LPARPERVGLRGLPQRAGTSQWVVGPSP 87
E+P PV GP P PV R LPA P+ LP R+G GP P
Sbjct: 363 ERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ------LPSRSGVDSPRSGPRP 416
Query: 88 PQPMNKVLGSHP 99
P P ++ P
Sbjct: 417 PLPPDRPSAGAP 428
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 31.6 bits (70), Expect = 0.28
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 12 PGMRRWASVSTSWRVLGPGLVLEQPAWPVGAQRCEVGPPPGLTPVGRGLPARPERVGLRG 71
PG + AS + P V+ P P G G P G RG RP R+ L G
Sbjct: 845 PGPSQAASAFGAGPTQPPHPVVPSPVRPSG------GRPEGFLGQ-RGRAVRPTRLSLEG 897
Query: 72 LPQRAGTSQWVVGPSPPQP 90
LP ++ + P P P
Sbjct: 898 LPSLPSMHEYPLPPEPKSP 916
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 31.6 bits (70), Expect = 0.28
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPP-----PGLTPVG----RGLPARPERVGLRGLPQRA 76
VL PG+++E P P G +GPP PG PVG RG P R G G P
Sbjct: 304 VLEPGMLVEGPPGPEGPAGL-IGPPGIQGNPG--PVGDPGERGPPGRAGLPGSDGAPGPP 360
Query: 77 GTS 79
GTS
Sbjct: 361 GTS 363
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 31.6 bits (70), Expect = 0.28
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPP-----PGLTPVG----RGLPARPERVGLRGLPQRA 76
VL PG+++E P P G +GPP PG PVG RG P R G G P
Sbjct: 283 VLEPGMLVEGPPGPEGPAGL-IGPPGIQGNPG--PVGDPGERGPPGRAGLPGSDGAPGPP 339
Query: 77 GTS 79
GTS
Sbjct: 340 GTS 342
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 31.6 bits (70), Expect = 0.28
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 26 VLGPGLVLEQPAWPVGAQRCEVGPP-----PGLTPVG----RGLPARPERVGLRGLPQRA 76
VL PG+++E P P G +GPP PG PVG RG P R G G P
Sbjct: 390 VLEPGMLVEGPPGPEGPAGL-IGPPGIQGNPG--PVGDPGERGPPGRAGLPGSDGAPGPP 446
Query: 77 GTS 79
GTS
Sbjct: 447 GTS 449
>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 31.2 bits (69), Expect = 0.37
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 48 GPPPGLT-PVGRGLPAR------PERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100
GP PG P+ GL R P+R GL A ++ VVGPSPP P ++
Sbjct: 153 GPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSES 212
Query: 101 RL 102
RL
Sbjct: 213 RL 214
>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
sapiens]
Length = 242
Score = 31.2 bits (69), Expect = 0.37
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 48 GPPPGLT-PVGRGLPAR------PERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100
GP PG P+ GL R P+R GL A ++ VVGPSPP P ++
Sbjct: 153 GPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRRLHSGSES 212
Query: 101 RL 102
RL
Sbjct: 213 RL 214
>gi|148612825 Rap GTPase interactor [Homo sapiens]
Length = 1075
Score = 31.2 bits (69), Expect = 0.37
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 32 VLEQPAWPVGAQRCEVGPPPGLTPVGRGLPARPERVGLRGLPQRA--GTSQWVVGPSPPQ 89
+L P+ P+G + + P P G+ LP R +R GL GL A G S + SPP
Sbjct: 902 LLTPPSTPLGPEPGDPDWPESGGPCGKALPER-QRNGLSGLRGAAPEGDSAALAEESPPA 960
Query: 90 PMNK 93
P ++
Sbjct: 961 PSSR 964
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 31.2 bits (69), Expect = 0.37
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 49 PPPGL--TPVGRGLPARPERVGLRGLPQRAGTSQW-VVGPSPPQPMNKVLGSHPQRLQNE 105
P PG TP+G P P R G P S + G PP P+ L S P + Q
Sbjct: 268 PRPGYPGTPMGASGPGYPLRGGRAPSPGYPQQSPYPATGGKPPYPIQPQLPSFPGQPQPS 327
Query: 106 VHTASPLHPG 115
V P PG
Sbjct: 328 VPLQPPYPPG 337
>gi|24308527 stereocilin [Homo sapiens]
Length = 1775
Score = 30.8 bits (68), Expect = 0.48
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 2 SVADKIKSQEPGMRRWASVSTSWRVLGPGLVLEQPAWP 39
SV I+ PGMR + + R+L P L E PAWP
Sbjct: 826 SVLAAIRDYSPGMRPEQKEALAKRLLAPELFGEVPAWP 863
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 30.4 bits (67), Expect = 0.63
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 33 LEQPAWPVGAQRCEVGPPPGLTPVGRGLPARPERVGLRGLPQRAGTSQWVV----GPSPP 88
++ P PVGA + PG+ P RGLP P +GLRG+ + V GPS P
Sbjct: 622 VQGPRGPVGAPGLKGDGYPGV-PGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGP 680
Query: 89 Q 89
+
Sbjct: 681 R 681
>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
Length = 166
Score = 30.4 bits (67), Expect = 0.63
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 49 PPPGLTPVG---RGLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100
PPP P G +G RP R +G PQ+ G Q GP PP P K G PQ
Sbjct: 102 PPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---GPPPPPP-GKPQGPPPQ 152
>gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 30.4 bits (67), Expect = 0.63
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 49 PPPGLTPVG---RGLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100
PPP P G +G RP R +G PQ+ G Q GP PP P K G PQ
Sbjct: 102 PPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---GPPPPPP-GKPQGPPPQ 152
>gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 30.4 bits (67), Expect = 0.63
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 49 PPPGLTPVG---RGLPARPERVGLRGLPQRAGTSQWVVGPSPPQPMNKVLGSHPQ 100
PPP P G +G RP R +G PQ+ G Q GP PP P K G PQ
Sbjct: 102 PPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---GPPPPPP-GKPQGPPPQ 152
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 30.0 bits (66), Expect = 0.82
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 33 LEQPAWPVGAQRCE-----VGPPPGLTPVG-RGLPARPERVGLRGLPQRAGTSQWVVGPS 86
LE P VGA + GP + P+G RG+P R+G +G P + G P
Sbjct: 307 LEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPG 366
Query: 87 PPQPM 91
P P+
Sbjct: 367 PMGPL 371
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 30.0 bits (66), Expect = 0.82
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 67 VGLRGLPQRAGTSQWVV-GPSPPQPMNKVLGSHPQRLQNEVHTASPLHP 114
VG+ P + G SQ V G + P P+N +LG +L T SPLHP
Sbjct: 770 VGMGQPPAQTGVSQGQVPGAALPNPLN-MLGPQASQLPCPPVTQSPLHP 817
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 30.0 bits (66), Expect = 0.82
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 67 VGLRGLPQRAGTSQWVV-GPSPPQPMNKVLGSHPQRLQNEVHTASPLHP 114
VG+ P + G SQ V G + P P+N +LG +L T SPLHP
Sbjct: 808 VGMGQPPAQTGVSQGQVPGAALPNPLN-MLGPQASQLPCPPVTQSPLHP 855
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 30.0 bits (66), Expect = 0.82
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 51 PGLTPVGRGLPARPERVGLRGLPQRAGT--SQWVVGPSPPQPMNKVLGSHPQRLQNEVHT 108
PGL G+P RP GL+GLP R G SQ P P P + E
Sbjct: 854 PGLV----GVPGRPGVRGLKGLPGRNGEKGSQGFGYPGEQGPPGPPGPEGPPGISKEGPP 909
Query: 109 ASPLHPGGDDD 119
P PG D D
Sbjct: 910 GDPGLPGKDGD 920
Score = 26.9 bits (58), Expect = 6.9
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 48 GPPPGLTPVG-RGLPARPERVGLRGL---PQRAG 77
GPP + P G RGLP P R G+ GL P R G
Sbjct: 831 GPPGPIGPEGPRGLPGLPGRDGVPGLVGVPGRPG 864
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,634,571
Number of Sequences: 37866
Number of extensions: 557484
Number of successful extensions: 1671
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 1483
Number of HSP's gapped (non-prelim): 380
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.