Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CREBBP Sequence: fasta or formatted (2442aa) NCBI GI: 119943104
Description:

CREB binding protein isoform a

Referenced in:

Bromodomain Family
CREB / ATF Family
Interferon
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [2404aa] CREB binding protein isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2        176           3
 C cysteine            2.0         50           2
 D aspartate           3.2         78           2
 E glutamate           4.3        105           4
 F phenylalanine       2.0         49           2
 G glycine             7.1        173           2
 H histidine           2.6         64           2
 I isoleucine          3.1         75           2
 K lysine              4.8        116           3
 L leucine             7.1        173           3
 M methionine          3.9         95           2
 N asparagine          4.9        119           2
 P proline            11.3        276           4
 Q glutamine          11.0        268          18
 R arginine            4.0         98           3
 S serine              8.9        218           3
 T threonine           5.4        133           2
 V valine              4.9        119           2
 W tryptophan          0.6         14           1
 Y tyrosine            1.8         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CREB binding protein isoform a 
CREBBP                0.979   CREB binding protein isoform b 
EP300                 0.557   E1A binding protein p300 
MLL2                  0.015   myeloid/lymphoid or mixed-lineage leukemia 2 
BRD4                  0.014   bromodomain-containing protein 4 isoform short 
BRD4                  0.014   bromodomain-containing protein 4 isoform long 
MED15                 0.014   mediator complex subunit 15 isoform b 
MED12                 0.014   mediator complex subunit 12 
ATN1                  0.014   atrophin-1 
ATN1                  0.014   atrophin-1 
BRD3                  0.013   bromodomain containing protein 3 
BRD2                  0.013   bromodomain containing 2 
BRD2                  0.013   bromodomain containing 2 
MAML2                 0.012   mastermind-like 2 
MED15                 0.012   mediator complex subunit 15 isoform a 
RAPH1                 0.012   Ras association and pleckstrin homology domains 1 is...
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
PHIP                  0.012   pleckstrin homology domain interacting protein [Homo...
MLL3                  0.011   myeloid/lymphoid or mixed-lineage leukemia 3 
NCOA6                 0.011   nuclear receptor coactivator 6 
MAML3                 0.011   mastermind-like 3 
MUC2                  0.011   mucin 2 precursor 
KIAA0754              0.011   hypothetical protein LOC643314 
PRG4                  0.011   proteoglycan 4 isoform D 
PRG4                  0.011   proteoglycan 4 isoform C 
PRG4                  0.011   proteoglycan 4 isoform B 
PRG4                  0.011   proteoglycan 4 isoform A 
EP400                 0.011   E1A binding protein p400 
FLJ22184              0.011   PREDICTED: hypothetical protein LOC80164 
NACA                  0.011   nascent polypeptide-associated complex alpha subuni...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press