Guide to the Human Genome
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Name: LOC100291212 Sequence: fasta or formatted (369aa) NCBI GI: 239751641
Description:

PREDICTED: hypothetical protein XP_002347943

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         28           2
 C cysteine            2.7         10           1
 D aspartate           2.7         10           1
 E glutamate           6.8         25           2
 F phenylalanine       2.2          8           1
 G glycine             9.2         34           2
 H histidine           1.6          6           1
 I isoleucine          2.4          9           1
 K lysine              4.1         15           2
 L leucine            16.8         62           3
 M methionine          1.6          6           1
 N asparagine          1.9          7           2
 P proline            10.0         37           2
 Q glutamine           3.5         13           1
 R arginine            8.1         30           2
 S serine              8.9         33           2
 T threonine           3.8         14           1
 V valine              3.5         13           1
 W tryptophan          1.9          7           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347943 
NFIL3                 0.116   nuclear factor, interleukin 3 regulated 
DBP                   0.057   D site of albumin promoter (albumin D-box) binding p...
TEF                   0.052   thyrotrophic embryonic factor isoform 2 
TEF                   0.052   thyrotrophic embryonic factor isoform 1 
HLF                   0.051   hepatic leukemia factor 
CEBPG                 0.017   CCAAT/enhancer binding protein gamma 
CCDC88B               0.017   coiled-coil domain containing 88 
FAM22F                0.017   hypothetical protein LOC54754 
CREB1                 0.015   cAMP responsive element binding protein 1 isoform A [...
CREB1                 0.015   cAMP responsive element binding protein 1 isoform B ...
CREM                  0.015   cAMP responsive element modulator isoform j 
CREM                  0.015   cAMP responsive element modulator isoform i 
CREM                  0.015   cAMP responsive element modulator isoform h 
CREM                  0.015   cAMP responsive element modulator isoform g 
CREM                  0.015   cAMP responsive element modulator isoform d 
CREM                  0.015   cAMP responsive element modulator isoform r 
CREM                  0.015   cAMP responsive element modulator isoform s 
CREM                  0.015   cAMP responsive element modulator isoform t 
CREM                  0.015   cAMP responsive element modulator isoform u 
NUP153                0.014   nucleoporin 153kDa 
SSPO                  0.014   SCO-spondin 
MIA3                  0.014   melanoma inhibitory activity family, member 3 [Homo...
SREBF1                0.014   sterol regulatory element binding transcription fact...
ATF7                  0.014   activating transcription factor 7 isoform 3 
ATF7                  0.014   activating transcription factor 7 isoform 2 
ATF7                  0.014   activating transcription factor 7 isoform 1 
KIAA1522              0.014   hypothetical protein LOC57648 
LOC100287077          0.012   PREDICTED: hypothetical protein XP_002342467 
ATF1                  0.012   activating transcription factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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