Guide to the Human Genome
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Name: LOC100287290 Sequence: fasta or formatted (242aa) NCBI GI: 239742182
Description:

PREDICTED: hypothetical protein XP_002342446

Not currently referenced in the text

Other entries for this name:
alt mRNA {242aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         23           1
 C cysteine            1.2          3           1
 D aspartate           3.3          8           1
 E glutamate           4.1         10           2
 F phenylalanine       1.7          4           1
 G glycine            13.2         32           3
 H histidine           2.5          6           1
 I isoleucine          2.9          7           2
 K lysine              1.7          4           1
 L leucine             9.9         24           2
 M methionine          0.8          2           1
 N asparagine          2.1          5           2
 P proline            11.6         28           4
 Q glutamine           5.0         12           4
 R arginine           13.2         32           2
 S serine              7.4         18           2
 T threonine           3.3          8           1
 V valine              5.0         12           2
 W tryptophan          0.8          2           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342446 
LOC100287290          1.000   PREDICTED: hypothetical protein 
FLJ37078              0.062   hypothetical protein LOC222183 
COL5A3                0.059   collagen, type V, alpha 3 preproprotein 
COL1A1                0.057   alpha 1 type I collagen preproprotein 
COL3A1                0.051   collagen type III alpha 1 preproprotein 
COL28A1               0.051   collagen, type XXVIII precursor 
FGF2                  0.049   fibroblast growth factor 2 
COL5A1                0.047   alpha 1 type V collagen preproprotein 
COL2A1                0.042   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.042   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL7A1                0.042   alpha 1 type VII collagen precursor 
COL4A3                0.040   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.040   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.040   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.040   alpha 3 type IV collagen isoform 1 precursor 
OGFR                  0.040   opioid growth factor receptor 
SRPK3                 0.040   serine arginine rich protein-specific kinase 3 [Homo...
COL4A6                0.040   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.040   type IV alpha 6 collagen isoform B precursor 
COL11A1               0.038   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.038   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.038   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL18A1               0.038   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.038   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.038   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
COL4A4                0.038   alpha 4 type IV collagen precursor 
COL1A2                0.038   alpha 2 type I collagen 
COL4A5                0.038   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.038   type IV collagen alpha 5 isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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