Guide to the Human Genome
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Name: VPS37C Sequence: fasta or formatted (355aa) NCBI GI: 57863314
Description:

vacuolar protein sorting 37C

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         25           2
 C cysteine            0.3          1           1
 D aspartate           2.0          7           1
 E glutamate           8.7         31           3
 F phenylalanine       2.5          9           1
 G glycine             7.9         28           2
 H histidine           0.6          2           1
 I isoleucine          1.1          4           1
 K lysine              3.1         11           1
 L leucine            10.4         37           2
 M methionine          2.5          9           1
 N asparagine          1.4          5           1
 P proline            20.0         71           4
 Q glutamine           7.3         26           2
 R arginine            5.6         20           2
 S serine              7.6         27           2
 T threonine           2.8         10           1
 V valine              4.5         16           2
 W tryptophan          0.6          2           1
 Y tyrosine            3.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vacuolar protein sorting 37C 
VPS37B                0.197   vacuolar protein sorting 37B 
VPS37D                0.148   vacuolar protein sorting 37D 
DIAPH1                0.080   diaphanous 1 isoform 2 
DIAPH1                0.080   diaphanous 1 isoform 1 
CPSF6                 0.080   cleavage and polyadenylation specific factor 6, 68 ...
PRB1                  0.080   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.078   proline-rich protein BstNI subfamily 2 
PRB3                  0.077   proline-rich protein BstNI subfamily 3 precursor [H...
SF3A2                 0.077   splicing factor 3a, subunit 2 
VPS37A                0.076   hepatocellular carcinoma related protein 1 isoform ...
VPS37A                0.076   hepatocellular carcinoma related protein 1 isoform ...
WIPF1                 0.076   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.076   WAS/WASL interacting protein family, member 1 
FMN2                  0.076   formin 2 
SFPQ                  0.073   splicing factor proline/glutamine rich (polypyrimidin...
CCNK                  0.073   cyclin K isoform 1 
SF3B4                 0.071   splicing factor 3b, subunit 4 
MAPK1IP1L             0.070   MAPK-interacting and spindle-stabilizing protein [Ho...
NACA                  0.070   nascent polypeptide-associated complex alpha subuni...
WNK2                  0.069   WNK lysine deficient protein kinase 2 
EMID2                 0.069   EMI domain containing 2 
FLJ22184              0.069   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.067   PREDICTED: hypothetical protein LOC80164 
SF1                   0.067   splicing factor 1 isoform 1 
SMARCC2               0.067   SWI/SNF-related matrix-associated actin-dependent re...
PRB1                  0.066   proline-rich protein BstNI subfamily 1 isoform 2 pre...
WIPF3                 0.066   WAS/WASL interacting protein family, member 3 [Homo...
SMARCC2               0.066   SWI/SNF-related matrix-associated actin-dependent r...
TAF4                  0.064   TBP-associated factor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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