Guide to the Human Genome
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Name: CREBBP Sequence: fasta or formatted (2404aa) NCBI GI: 119943102
Description:

CREB binding protein isoform b

Referenced in:

CREB / ATF Family
Interferon
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [2442aa] CREB binding protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2        174           3
 C cysteine            1.9         46           2
 D aspartate           3.2         76           2
 E glutamate           4.4        105           4
 F phenylalanine       2.0         49           2
 G glycine             7.2        173           2
 H histidine           2.5         61           2
 I isoleucine          3.0         73           2
 K lysine              4.7        113           3
 L leucine             7.1        171           3
 M methionine          4.0         95           2
 N asparagine          4.8        116           2
 P proline            11.4        274           4
 Q glutamine          11.0        265          18
 R arginine            4.0         95           3
 S serine              8.9        214           3
 T threonine           5.4        131           2
 V valine              4.9        117           2
 W tryptophan          0.5         13           1
 Y tyrosine            1.8         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CREB binding protein isoform b 
CREBBP                0.996   CREB binding protein isoform a 
EP300                 0.546   E1A binding protein p300 
MLL2                  0.016   myeloid/lymphoid or mixed-lineage leukemia 2 
BRD4                  0.015   bromodomain-containing protein 4 isoform short 
BRD4                  0.015   bromodomain-containing protein 4 isoform long 
MED15                 0.014   mediator complex subunit 15 isoform b 
MED12                 0.014   mediator complex subunit 12 
ATN1                  0.014   atrophin-1 
ATN1                  0.014   atrophin-1 
BRD3                  0.014   bromodomain containing protein 3 
BRD2                  0.013   bromodomain containing 2 
BRD2                  0.013   bromodomain containing 2 
MAML2                 0.013   mastermind-like 2 
MED15                 0.012   mediator complex subunit 15 isoform a 
RAPH1                 0.012   Ras association and pleckstrin homology domains 1 is...
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
PHIP                  0.012   pleckstrin homology domain interacting protein [Homo...
MLL3                  0.012   myeloid/lymphoid or mixed-lineage leukemia 3 
NCOA6                 0.012   nuclear receptor coactivator 6 
MAML3                 0.012   mastermind-like 3 
MUC2                  0.011   mucin 2 precursor 
KIAA0754              0.011   hypothetical protein LOC643314 
PRG4                  0.011   proteoglycan 4 isoform D 
PRG4                  0.011   proteoglycan 4 isoform C 
PRG4                  0.011   proteoglycan 4 isoform B 
PRG4                  0.011   proteoglycan 4 isoform A 
EP400                 0.011   E1A binding protein p400 
GLTSCR1               0.011   glioma tumor suppressor candidate region gene 1 [Ho...
FLJ22184              0.011   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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