Search of human proteins with 23510421

Search of human proteins with 23510421

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23510421 tumor necrosis factor receptor superfamily, member
6 isoform 2 precursor [Homo sapiens]
         (314 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23510421 tumor necrosis factor receptor superfamily, member 6...   654   0.0  
gi|4507583 tumor necrosis factor receptor superfamily, member 6 ...   642   0.0  
gi|23510423 tumor necrosis factor receptor superfamily, member 6...   415   e-116
gi|224494019 tumor necrosis factor receptor superfamily, member ...    70   2e-12
gi|4505039 lymphotoxin beta receptor [Homo sapiens]                    69   5e-12
gi|224494026 tumor necrosis factor receptor superfamily, member ...    66   3e-11
gi|23200041 tumor necrosis factor receptor superfamily, member 1...    65   6e-11
gi|23200023 tumor necrosis factor receptor superfamily, member 2...    65   6e-11
gi|23200021 tumor necrosis factor receptor superfamily, member 2...    65   6e-11
gi|89142745 tumor necrosis factor receptor superfamily, member 2...    65   6e-11
gi|4507569 tumor necrosis factor receptor superfamily, member 25...    65   6e-11
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ...    65   1e-10
gi|22547121 tumor necrosis factor receptor superfamily, member 1...    63   3e-10
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]             63   4e-10
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]            63   4e-10
gi|21361086 tumor necrosis factor receptor superfamily, member 1...    63   4e-10
gi|22547108 tumor necrosis factor receptor superfamily, member 1...    62   9e-10
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi...    55   8e-08
gi|4505393 nerve growth factor receptor precursor [Homo sapiens]       55   1e-07
gi|4507565 tumor necrosis factor receptor superfamily, member 11...    54   2e-07
gi|14790170 tumor necrosis factor receptor superfamily, member 6...    53   4e-07
gi|4507585 tumor necrosis factor receptor superfamily, member 6b...    53   4e-07
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi...    48   1e-05
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ...    47   3e-05
gi|68348711 tumor necrosis factor receptor superfamily, member 8...    40   0.002
gi|24308069 zinc finger protein 521 [Homo sapiens]                     37   0.017
gi|33946313 ninein isoform 4 [Homo sapiens]                            37   0.017
gi|33946321 ninein isoform 5 [Homo sapiens]                            37   0.017
gi|148536871 ninein isoform 1 [Homo sapiens]                           37   0.017
gi|148536869 ninein isoform 2 [Homo sapiens]                           37   0.017

>gi|23510421 tumor necrosis factor receptor superfamily, member 6
           isoform 2 precursor [Homo sapiens]
          Length = 314

 Score =  654 bits (1688), Expect = 0.0
 Identities = 314/314 (100%), Positives = 314/314 (100%)

Query: 1   MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCH 60
           MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCH
Sbjct: 1   MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCH 60

Query: 61  KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCT 120
           KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCT
Sbjct: 61  KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCT 120

Query: 121 RTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSNTKCKEEVKRKEVQKTCRK 180
           RTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSNTKCKEEVKRKEVQKTCRK
Sbjct: 121 RTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSNTKCKEEVKRKEVQKTCRK 180

Query: 181 HRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDE 240
           HRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDE
Sbjct: 181 HRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDE 240

Query: 241 IKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSD 300
           IKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSD
Sbjct: 241 IKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSD 300

Query: 301 SENSNFRNEIQSLV 314
           SENSNFRNEIQSLV
Sbjct: 301 SENSNFRNEIQSLV 314


>gi|4507583 tumor necrosis factor receptor superfamily, member 6
           isoform 1 precursor [Homo sapiens]
          Length = 335

 Score =  642 bits (1656), Expect = 0.0
 Identities = 314/335 (93%), Positives = 314/335 (93%), Gaps = 21/335 (6%)

Query: 1   MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCH 60
           MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCH
Sbjct: 1   MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCH 60

Query: 61  KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCT 120
           KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCT
Sbjct: 61  KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCT 120

Query: 121 RTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSNTKCKEE------------ 168
           RTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSNTKCKEE            
Sbjct: 121 RTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSNTKCKEEGSRSNLGWLCLL 180

Query: 169 ---------VKRKEVQKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVM 219
                    VKRKEVQKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVM
Sbjct: 181 LLPIPLIVWVKRKEVQKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVM 240

Query: 220 TLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKK 279
           TLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKK
Sbjct: 241 TLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKK 300

Query: 280 ANLCTLAEKIQTIILKDITSDSENSNFRNEIQSLV 314
           ANLCTLAEKIQTIILKDITSDSENSNFRNEIQSLV
Sbjct: 301 ANLCTLAEKIQTIILKDITSDSENSNFRNEIQSLV 335


>gi|23510423 tumor necrosis factor receptor superfamily, member 6
           isoform 3 precursor [Homo sapiens]
          Length = 220

 Score =  415 bits (1067), Expect = e-116
 Identities = 196/217 (90%), Positives = 196/217 (90%), Gaps = 21/217 (9%)

Query: 1   MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCH 60
           MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCH
Sbjct: 1   MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCH 60

Query: 61  KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCT 120
           KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCT
Sbjct: 61  KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCT 120

Query: 121 RTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSNTKCKEE------------ 168
           RTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSNTKCKEE            
Sbjct: 121 RTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSNTKCKEEGSRSNLGWLCLL 180

Query: 169 ---------VKRKEVQKTCRKHRKENQGSHESPTLNP 196
                    VKRKEVQKTCRKHRKENQGSHESPTLNP
Sbjct: 181 LLPIPLIVWVKRKEVQKTCRKHRKENQGSHESPTLNP 217


>gi|224494019 tumor necrosis factor receptor superfamily, member 10b
           isoform 1 precursor [Homo sapiens]
          Length = 440

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 25/168 (14%)

Query: 63  CPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN-CTR 121
           CPPG        ++ D  DC+ C+ G++Y+   +    C RC  CD G   EVE++ CT 
Sbjct: 81  CPPGHH------ISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSG---EVELSPCTT 131

Query: 122 TQNTKCRCKPNFFCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEVKRKEVQKTC 178
           T+NT C+C+   F      E C  C T C  G++K  +CT  S+ +C         +++ 
Sbjct: 132 TRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVH-------KESG 184

Query: 179 RKHRKENQGSHESPTLNPETVAINLSDVDLSKYI--TTIAGVMTLSQV 224
            KH  E     E+ T +P T A   S   LS  I   T+A V+ +  V
Sbjct: 185 TKHSGEVPAVEETVTSSPGTPA---SPCSLSGIIIGVTVAAVVLIVAV 229


>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
          Length = 435

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 51/166 (30%), Positives = 71/166 (42%), Gaps = 25/166 (15%)

Query: 43  TVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCR 102
           T   Q  E      + C   CPPG   +  C+   D   C  C E   Y +  ++ + C+
Sbjct: 42  TCRDQEKEYYEPQHRICCSRCPPGTYVSAKCSRIRDTV-CATCAENS-YNEHWNYLTICQ 99

Query: 103 RCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSN 162
            CR CD   GLE    CT  + T+CRC+P  FC +   E    CT CE  ++ +C   + 
Sbjct: 100 LCRPCDPVMGLEEIAPCTSKRKTQCRCQPGMFCAAWALE----CTHCE--LLSDCPPGTE 153

Query: 163 TKCKEEV----------KRKEVQKT------CRKH-RKENQGSHES 191
            + K+EV          K    Q T      C+ H R ENQG  E+
Sbjct: 154 AELKDEVGKGNNHCVPCKAGHFQNTSSPSARCQPHTRCENQGLVEA 199


>gi|224494026 tumor necrosis factor receptor superfamily, member 10b
           isoform 2 precursor [Homo sapiens]
          Length = 411

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 13/107 (12%)

Query: 63  CPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN-CTR 121
           CPPG        ++ D  DC+ C+ G++Y+   +    C RC  CD G   EVE++ CT 
Sbjct: 81  CPPGHH------ISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSG---EVELSPCTT 131

Query: 122 TQNTKCRCKPNFFCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKC 165
           T+NT C+C+   F      E C  C T C  G++K  +CT  S+ +C
Sbjct: 132 TRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIEC 178


>gi|23200041 tumor necrosis factor receptor superfamily, member 14
           precursor [Homo sapiens]
          Length = 283

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 42/141 (29%), Positives = 55/141 (39%), Gaps = 36/141 (25%)

Query: 56  GQFCHKPCPPGERKARDC-TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLE 114
           G  C   C PG R    C  + G    C PC  G  Y    +  SKC +C++CD   GL 
Sbjct: 50  GSECCPKCSPGYRVKEACGELTGTV--CEPCPPGT-YIAHLNGLSKCLQCQMCDPAMGLR 106

Query: 115 VEINCTRTQNTKCRCKPNFFC------------------------------NSTVCEHCD 144
              NC+RT+N  C C P  FC                                T+C++C 
Sbjct: 107 ASRNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCP 166

Query: 145 PCTKCEHGIIKECTLTSNTKC 165
           P T   +G ++EC     TKC
Sbjct: 167 PGTFSPNGTLEEC--QHQTKC 185


>gi|23200023 tumor necrosis factor receptor superfamily, member 25
           isoform 3 precursor [Homo sapiens]
          Length = 380

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 56  GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
           G FC + CP G      CT       C+ C +      + H +S+C RC+ CDE      
Sbjct: 44  GLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVA 103

Query: 116 EINCTRTQNTKCRCKPNFF-------CNSTVCEHCDPCTKC 149
             NC+   +T+C CKP +F       C S+   +C PC  C
Sbjct: 104 LENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDC 144


>gi|23200021 tumor necrosis factor receptor superfamily, member 25
           isoform 1 precursor [Homo sapiens]
          Length = 426

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 56  GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
           G FC + CP G      CT       C+ C +      + H +S+C RC+ CDE      
Sbjct: 44  GLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVA 103

Query: 116 EINCTRTQNTKCRCKPNFF-------CNSTVCEHCDPCTKC 149
             NC+   +T+C CKP +F       C S+   +C PC  C
Sbjct: 104 LENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDC 144


>gi|89142745 tumor necrosis factor receptor superfamily, member 25
           isoform 12 precursor [Homo sapiens]
          Length = 181

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 56  GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
           G FC + CP G      CT       C+ C +      + H +S+C RC+ CDE      
Sbjct: 44  GLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVA 103

Query: 116 EINCTRTQNTKCRCKPNFF-------CNSTVCEHCDPCTKC 149
             NC+   +T+C CKP +F       C S+   +C PC  C
Sbjct: 104 LENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDC 144


>gi|4507569 tumor necrosis factor receptor superfamily, member 25
           isoform 2 precursor [Homo sapiens]
          Length = 417

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 56  GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
           G FC + CP G      CT       C+ C +      + H +S+C RC+ CDE      
Sbjct: 44  GLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVA 103

Query: 116 EINCTRTQNTKCRCKPNFF-------CNSTVCEHCDPCTKC 149
             NC+   +T+C CKP +F       C S+   +C PC  C
Sbjct: 104 LENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDC 144


>gi|4507587 tumor necrosis factor receptor superfamily, member 7
           precursor [Homo sapiens]
          Length = 260

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 56  GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
           G+ C + C PG    +DC  +     C PC  G  ++   H    C  CR C+ G  +  
Sbjct: 36  GKLCCQMCEPGTFLVKDCDQHRKAAQCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVR- 94

Query: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCDP 145
             NCT T N +C C+  + C    C  CDP
Sbjct: 95  --NCTITANAECACRNGWQCRDKECTECDP 122


>gi|22547121 tumor necrosis factor receptor superfamily, member 10c
           precursor [Homo sapiens]
          Length = 259

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 14/115 (12%)

Query: 58  FCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLC--DEGHGLEV 115
           F  + CP G  ++           C PC EG +YT+ ++    C  C +C  D+ H    
Sbjct: 48  FKGEECPAGSHRSEHTGA------CNPCTEGVDYTNASNNEPSCFPCTVCKSDQKH---- 97

Query: 116 EINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIK--ECTLTSNTKCKEE 168
           + +CT T++T C+CK   F N    E C  C++C  G ++   CT   + +C EE
Sbjct: 98  KSSCTMTRDTVCQCKEGTFRNENSPEMCRKCSRCPSGEVQVSNCTSWDDIQCVEE 152


>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
          Length = 277

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 59  CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN 118
           C   C PG++   DCT    E +C+PC E  E+ D  +  + C + + CD   GL V+  
Sbjct: 37  CCSLCQPGQKLVSDCT-EFTETECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQK 94

Query: 119 CTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCE--HGIIKECTLTSNTKCK 166
            T   +T C C+  + C S  CE C     C    G+ +  T  S+T C+
Sbjct: 95  GTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICE 144


>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
          Length = 203

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 59  CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN 118
           C   C PG++   DCT    E +C+PC E  E+ D  +  + C + + CD   GL V+  
Sbjct: 37  CCSLCQPGQKLVSDCT-EFTETECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQK 94

Query: 119 CTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCE--HGIIKECTLTSNTKCK 166
            T   +T C C+  + C S  CE C     C    G+ +  T  S+T C+
Sbjct: 95  GTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICE 144


>gi|21361086 tumor necrosis factor receptor superfamily, member 10a
           [Homo sapiens]
          Length = 468

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 17/117 (14%)

Query: 57  QFCHKP----CPPGERKARDCTVNGDEPD-CVPCQEGKEYTDKAHFSSKCRRCRLCDEGH 111
           Q+ H P    CPPG  ++       + P  C  C EG  YT+ ++    C  C  C    
Sbjct: 122 QWEHSPLGELCPPGSHRS-------EHPGACNRCTEGVGYTNASNNLFACLPCTACKSDE 174

Query: 112 GLEVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTK-CEHGI--IKECTLTSNTKC 165
             E    CT T+NT C+CKP  F N    E C  C++ C  G+  +K+CT  S+ +C
Sbjct: 175 --EERSPCTTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIEC 229


>gi|22547108 tumor necrosis factor receptor superfamily, member 10d
           precursor [Homo sapiens]
          Length = 386

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 11/118 (9%)

Query: 63  CPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRT 122
           CP G  ++           C PC EG +YT  ++    C  C +C  G     + +CT T
Sbjct: 83  CPAGSHRSEYTGA------CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTT 134

Query: 123 QNTKCRCKPNFFCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEVKRKEVQKT 177
           ++T C+C+   F +    E C  C T C  G++K   CT  S+ KCK E       KT
Sbjct: 135 RDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKT 192


>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
           sapiens]
          Length = 461

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 57  QFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVE 116
           Q C   C PG+     CT   D   C  C++   YT   ++  +C  C        +E +
Sbjct: 51  QMCCSKCSPGQHAKVFCTKTSDTV-CDSCEDST-YTQLWNWVPECLSCGSRCSSDQVETQ 108

Query: 117 INCTRTQNTKCRCKPNFFC---NSTVCEHCDPCTKCE--HGIIKECTLTSNTKCK 166
             CTR QN  C C+P ++C       C  C P  KC    G+ +  T TS+  CK
Sbjct: 109 A-CTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCK 162


>gi|4505393 nerve growth factor receptor precursor [Homo sapiens]
          Length = 427

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 54  HDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGL 113
           H G+ C K C  GE  A+ C  N  +  C PC +   ++D    +  C+ C  C    GL
Sbjct: 39  HSGECC-KACNLGEGVAQPCGAN--QTVCEPCLDSVTFSDVVSATEPCKPCTEC---VGL 92

Query: 114 E-VEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCE--HGIIKECTLTSNTKCKE 167
           + +   C    +  CRC   ++ + T    C+ C  CE   G++  C    NT C+E
Sbjct: 93  QSMSAPCVEADDAVCRCAYGYYQDETT-GRCEACRVCEAGSGLVFSCQDKQNTVCEE 148


>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
           precursor [Homo sapiens]
          Length = 616

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 54  HDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGL 113
           H G+ C+K C PG+  +  CT   D   C+PC    EY D  +   KC   ++CD G  L
Sbjct: 42  HLGRCCNK-CEPGKYMSSKCTTTSDSV-CLPCGPD-EYLDSWNEEDKCLLHKVCDTGKAL 98

Query: 114 EVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKE--CTLTSNTKCK 166
              +    T   +C C   +   S  CE C   T+C  G+  +    L  +T CK
Sbjct: 99  VAVVAGNSTTPRRCACTAGYHW-SQDCECCRRNTECAPGLGAQHPLQLNKDTVCK 152


>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
           [Homo sapiens]
          Length = 300

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 14/109 (12%)

Query: 63  CPPGERKARDCTVNGDEPD-CVPCQEGKEYTDKAHFSSKCRRCR-LCDEGHGLEVEINCT 120
           CPPG    R C    D P  C PC   + YT   ++  +CR C  LC E    E    C 
Sbjct: 52  CPPGTFVQRPC--RRDSPTTCGPCPP-RHYTQFWNYLERCRYCNVLCGERE--EEARACH 106

Query: 121 RTQNTKCRCKPNFFCNSTVC-EH--CDPCTKCEHGIIKECTLTSNTKCK 166
            T N  CRC+  FF ++  C EH  C P      G+I   T + NT+C+
Sbjct: 107 ATHNRACRCRTGFFAHAGFCLEHASCPPGA----GVIAPGTPSQNTQCQ 151


>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
           [Homo sapiens]
          Length = 300

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 14/109 (12%)

Query: 63  CPPGERKARDCTVNGDEPD-CVPCQEGKEYTDKAHFSSKCRRCR-LCDEGHGLEVEINCT 120
           CPPG    R C    D P  C PC   + YT   ++  +CR C  LC E    E    C 
Sbjct: 52  CPPGTFVQRPC--RRDSPTTCGPCPP-RHYTQFWNYLERCRYCNVLCGERE--EEARACH 106

Query: 121 RTQNTKCRCKPNFFCNSTVC-EH--CDPCTKCEHGIIKECTLTSNTKCK 166
            T N  CRC+  FF ++  C EH  C P      G+I   T + NT+C+
Sbjct: 107 ATHNRACRCRTGFFAHAGFCLEHASCPPGA----GVIAPGTPSQNTQCQ 151


>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
           sapiens]
          Length = 455

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 55  DGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLE 114
           +   C   C  G     DC   G + DC  C+ G  +T   +    C  C  C +  G +
Sbjct: 54  NNSICCTKCHKGTYLYNDCPGPGQDTDCRECESG-SFTASENHLRHCLSCSKCRKEMG-Q 111

Query: 115 VEI-NCTRTQNTKCRCKPNFFCN--STVCEHCDPCTKCEHGIIK-ECTLTSNTKC 165
           VEI +CT  ++T C C+ N + +  S     C  C+ C +G +   C    NT C
Sbjct: 112 VEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVC 166



 Score = 29.3 bits (64), Expect = 4.7
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 225 KGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGKKEA-YDTLIKDLKKANLC 283
           K FVR+ G+++ +ID ++  N +   E +  +L  W +   ++EA  + L + L+  +L 
Sbjct: 372 KEFVRRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLL 431

Query: 284 TLAEKIQ 290
              E I+
Sbjct: 432 GCLEDIE 438


>gi|4507579 tumor necrosis factor receptor superfamily, member 4
           precursor [Homo sapiens]
          Length = 277

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 97  FSSKCRRCRLCDEGHGLEVEINCTRTQNTKCR-CKPNFFCNSTVCEHCDPCTKCEHGIIK 155
           + S  R C  C  G+G+     C+R+QNT CR C P F+ +    + C PCT C      
Sbjct: 36  YPSNDRCCHECRPGNGMVSR--CSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGS 93

Query: 156 E----CTLTSNTKCK 166
           E    CT T +T C+
Sbjct: 94  ERKQLCTATQDTVCR 108



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 59  CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN 118
           CH+ C PG      C+       C PC  G  Y D    S  C+ C  C+   G E +  
Sbjct: 43  CHE-CRPGNGMVSRCS-RSQNTVCRPCGPGF-YNDVVS-SKPCKPCTWCNLRSGSERKQL 98

Query: 119 CTRTQNTKCRCK 130
           CT TQ+T CRC+
Sbjct: 99  CTATQDTVCRCR 110


>gi|68348711 tumor necrosis factor receptor superfamily, member 8
           isoform 1 precursor [Homo sapiens]
          Length = 595

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 59  CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN 118
           C   CP G    + C       DC    E   Y D+A    +C  C  C     +E +  
Sbjct: 44  CCYRCPMGLFPTQQCPQR--PTDCRKQCEPDYYLDEA---DRCTACVTCSRDDLVE-KTP 97

Query: 119 CTRTQNTKCRCKPNFFCNSTVCEHCDPC---TKCEHGIIKEC--TLTSNTKCK 166
           C    +  C C+P  FC+++    C  C   + C  G+I +   T   NT C+
Sbjct: 98  CAWNSSRVCECRPGMFCSTSAVNSCARCFFHSVCPAGMIVKFPGTAQKNTVCE 150


>gi|24308069 zinc finger protein 521 [Homo sapiens]
          Length = 1311

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 28/114 (24%)

Query: 100 KCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGII----- 154
           K  +C  C E  G EVE+ C  T ++K   K N          C  C+K  H II     
Sbjct: 781 KVHKCIFCGESFGTEVELQCHITTHSK---KYN----------CKFCSKAFHAIILLEKH 827

Query: 155 ---KECTLTSNTK------CKEEVKRKEVQ-KTCRKHRKENQGSHESPTLNPET 198
              K C   + T         E+V+++EV+ +T   + +E+  SH+    + +T
Sbjct: 828 LREKHCVFETKTPNCGTNGASEQVQKEEVELQTLLTNSQESHNSHDGSEEDVDT 881


>gi|33946313 ninein isoform 4 [Homo sapiens]
          Length = 2096

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 32/184 (17%)

Query: 141  EHCDPCTKCEHGIIKECT-----LTSNTKCKEEVKRKEV---QKTCRKHRKENQGSHESP 192
            E C P  +  H +I+EC      L  NT+  E+VK  E+     T + H+       E P
Sbjct: 1377 EECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKAHEIAWLHGTIQTHQ-------ERP 1429

Query: 193  TLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQ 252
             +  + +          +  TT+ G     Q K F  +  + E ++++ K   +    ++
Sbjct: 1430 RVQNQVIL---------EENTTLLGF----QDKHFQHQATIAELELEKTKLQELTRKLKE 1476

Query: 253  KVQLLRNWHQL--HG-KKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSDSENSNFRNE 309
            +V +L     +  HG K+E    ++ DL +     + +K++ +  +      ENS  RNE
Sbjct: 1477 RVTILVKQKDVLSHGEKEEELKAMMHDL-QITCSEMQQKVELLRYESEKLQQENSILRNE 1535

Query: 310  IQSL 313
            I +L
Sbjct: 1536 ITTL 1539


>gi|33946321 ninein isoform 5 [Homo sapiens]
          Length = 2090

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 32/184 (17%)

Query: 141  EHCDPCTKCEHGIIKECT-----LTSNTKCKEEVKRKEV---QKTCRKHRKENQGSHESP 192
            E C P  +  H +I+EC      L  NT+  E+VK  E+     T + H+       E P
Sbjct: 1371 EECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKAHEIAWLHGTIQTHQ-------ERP 1423

Query: 193  TLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQ 252
             +  + +          +  TT+ G     Q K F  +  + E ++++ K   +    ++
Sbjct: 1424 RVQNQVIL---------EENTTLLGF----QDKHFQHQATIAELELEKTKLQELTRKLKE 1470

Query: 253  KVQLLRNWHQL--HG-KKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSDSENSNFRNE 309
            +V +L     +  HG K+E    ++ DL +     + +K++ +  +      ENS  RNE
Sbjct: 1471 RVTILVKQKDVLSHGEKEEELKAMMHDL-QITCSEMQQKVELLRYESEKLQQENSILRNE 1529

Query: 310  IQSL 313
            I +L
Sbjct: 1530 ITTL 1533


>gi|148536871 ninein isoform 1 [Homo sapiens]
          Length = 2046

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 32/184 (17%)

Query: 141  EHCDPCTKCEHGIIKECT-----LTSNTKCKEEVKRKEV---QKTCRKHRKENQGSHESP 192
            E C P  +  H +I+EC      L  NT+  E+VK  E+     T + H+       E P
Sbjct: 1371 EECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKAHEIAWLHGTIQTHQ-------ERP 1423

Query: 193  TLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQ 252
             +  + +          +  TT+ G     Q K F  +  + E ++++ K   +    ++
Sbjct: 1424 RVQNQVIL---------EENTTLLGF----QDKHFQHQATIAELELEKTKLQELTRKLKE 1470

Query: 253  KVQLLRNWHQL--HG-KKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSDSENSNFRNE 309
            +V +L     +  HG K+E    ++ DL +     + +K++ +  +      ENS  RNE
Sbjct: 1471 RVTILVKQKDVLSHGEKEEELKAMMHDL-QITCSEMQQKVELLRYESEKLQQENSILRNE 1529

Query: 310  IQSL 313
            I +L
Sbjct: 1530 ITTL 1533


>gi|148536869 ninein isoform 2 [Homo sapiens]
          Length = 2133

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 32/184 (17%)

Query: 141  EHCDPCTKCEHGIIKECT-----LTSNTKCKEEVKRKEV---QKTCRKHRKENQGSHESP 192
            E C P  +  H +I+EC      L  NT+  E+VK  E+     T + H+       E P
Sbjct: 1371 EECVPRVRSVHHVIEECKQENQYLEGNTQLLEKVKAHEIAWLHGTIQTHQ-------ERP 1423

Query: 193  TLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQ 252
             +  + +          +  TT+ G     Q K F  +  + E ++++ K   +    ++
Sbjct: 1424 RVQNQVIL---------EENTTLLGF----QDKHFQHQATIAELELEKTKLQELTRKLKE 1470

Query: 253  KVQLLRNWHQL--HG-KKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSDSENSNFRNE 309
            +V +L     +  HG K+E    ++ DL +     + +K++ +  +      ENS  RNE
Sbjct: 1471 RVTILVKQKDVLSHGEKEEELKAMMHDL-QITCSEMQQKVELLRYESEKLQQENSILRNE 1529

Query: 310  IQSL 313
            I +L
Sbjct: 1530 ITTL 1533


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,280,713
Number of Sequences: 37866
Number of extensions: 592102
Number of successful extensions: 2366
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 2208
Number of HSP's gapped (non-prelim): 257
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.