Guide to the Human Genome
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Name: NIN Sequence: fasta or formatted (2133aa) NCBI GI: 148536869
Description:

ninein isoform 2

Referenced in:

Centrosome
Glycogen

Other entries for this name:
alt prot [2046aa] ninein isoform 1
alt prot [2096aa] ninein isoform 4
alt prot [2090aa] ninein isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         99           2
 C cysteine            1.7         36           2
 D aspartate           3.9         84           2
 E glutamate          15.7        335           3
 F phenylalanine       1.7         37           2
 G glycine             3.0         63           2
 H histidine           2.8         59           2
 I isoleucine          2.9         61           1
 K lysine              7.6        163           3
 L leucine            13.6        290           2
 M methionine          2.4         52           2
 N asparagine          4.5         95           2
 P proline             2.2         46           2
 Q glutamine           9.5        202           3
 R arginine            5.6        120           2
 S serine              6.8        146           2
 T threonine           4.9        104           3
 V valine              4.8        102           2
 W tryptophan          0.7         15           1
 Y tyrosine            1.1         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ninein isoform 2 
NIN                   0.969   ninein isoform 5 
NIN                   0.952   ninein isoform 4 
NIN                   0.951   ninein isoform 1 
NINL                  0.104   ninein-like 
CEP250                0.045   centrosomal protein 2 
GOLGA4                0.045   golgi autoantigen, golgin subfamily a, 4 
TCHH                  0.044   trichohyalin 
GOLGB1                0.044   golgi autoantigen, golgin subfamily b, macrogolgin ...
GCC2                  0.044   GRIP and coiled-coil domain-containing 2 
CENPE                 0.043   centromere protein E 
PLEC1                 0.036   plectin 1 isoform 11 
PLEC1                 0.036   plectin 1 isoform 10 
PLEC1                 0.036   plectin 1 isoform 8 
PLEC1                 0.036   plectin 1 isoform 7 
PLEC1                 0.036   plectin 1 isoform 6 
PLEC1                 0.036   plectin 1 isoform 3 
PLEC1                 0.036   plectin 1 isoform 2 
PLEC1                 0.036   plectin 1 isoform 1 
TRIP11                0.036   thyroid hormone receptor interactor 11 
CENPF                 0.035   centromere protein F 
EEA1                  0.035   early endosome antigen 1, 162kD 
TPR                   0.034   nuclear pore complex-associated protein TPR 
NUMA1                 0.033   nuclear mitotic apparatus protein 1 
CEP290                0.032   centrosomal protein 290kDa 
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH9                  0.032   myosin, heavy polypeptide 9, non-muscle 
PCNT                  0.031   pericentrin 
AKAP9                 0.031   A-kinase anchor protein 9 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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