Guide to the Human Genome
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Name: NIN Sequence: fasta or formatted (2046aa) NCBI GI: 148536871
Description:

ninein isoform 1

Referenced in:

Centrosome
Glycogen

Other entries for this name:
alt prot [2133aa] ninein isoform 2
alt prot [2096aa] ninein isoform 4
alt prot [2090aa] ninein isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         95           2
 C cysteine            1.7         35           2
 D aspartate           4.1         83           2
 E glutamate          15.8        323           3
 F phenylalanine       1.8         37           2
 G glycine             3.1         63           2
 H histidine           3.0         61           2
 I isoleucine          2.9         59           1
 K lysine              7.3        150           3
 L leucine            13.5        276           2
 M methionine          2.4         49           2
 N asparagine          4.3         88           2
 P proline             2.1         43           2
 Q glutamine           9.5        194           3
 R arginine            5.8        118           2
 S serine              7.0        143           2
 T threonine           4.7         97           3
 V valine              4.6         94           2
 W tryptophan          0.7         15           1
 Y tyrosine            1.1         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ninein isoform 1 
NIN                   0.990   ninein isoform 5 
NIN                   0.990   ninein isoform 2 
NIN                   0.973   ninein isoform 4 
NINL                  0.108   ninein-like 
GCC2                  0.046   GRIP and coiled-coil domain-containing 2 
CEP250                0.045   centrosomal protein 2 
TCHH                  0.045   trichohyalin 
GOLGA4                0.045   golgi autoantigen, golgin subfamily a, 4 
GOLGB1                0.044   golgi autoantigen, golgin subfamily b, macrogolgin ...
CENPE                 0.043   centromere protein E 
PLEC1                 0.038   plectin 1 isoform 11 
PLEC1                 0.038   plectin 1 isoform 10 
PLEC1                 0.038   plectin 1 isoform 8 
PLEC1                 0.038   plectin 1 isoform 7 
PLEC1                 0.038   plectin 1 isoform 6 
PLEC1                 0.038   plectin 1 isoform 3 
PLEC1                 0.038   plectin 1 isoform 2 
PLEC1                 0.038   plectin 1 isoform 1 
TRIP11                0.036   thyroid hormone receptor interactor 11 
EEA1                  0.036   early endosome antigen 1, 162kD 
TPR                   0.036   nuclear pore complex-associated protein TPR 
CENPF                 0.035   centromere protein F 
NUMA1                 0.034   nuclear mitotic apparatus protein 1 
MYH9                  0.033   myosin, heavy polypeptide 9, non-muscle 
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CEP290                0.032   centrosomal protein 290kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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