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Search of human proteins with 113426210
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113426210 PREDICTED: similar to hCG2042536 [Homo sapiens]
(847 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113426210 PREDICTED: similar to hCG2042536 [Homo sapiens] 1769 0.0
gi|113426528 PREDICTED: similar to hCG2042536 [Homo sapiens] 1768 0.0
gi|239756641 PREDICTED: similar to hCG2042536 [Homo sapiens] 1162 0.0
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 54 8e-07
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 54 8e-07
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 54 8e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 48 3e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 3e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 48 3e-05
gi|12707580 paired-like homeobox 2b [Homo sapiens] 47 6e-05
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 47 7e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 46 2e-04
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 46 2e-04
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 45 3e-04
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 45 3e-04
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 45 3e-04
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 45 4e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 45 4e-04
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 45 4e-04
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 44 5e-04
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 44 5e-04
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 44 5e-04
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 44 5e-04
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 44 6e-04
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 44 6e-04
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 44 6e-04
gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens] 44 6e-04
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 44 8e-04
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 44 8e-04
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 44 8e-04
>gi|113426210 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 847
Score = 1769 bits (4582), Expect = 0.0
Identities = 847/847 (100%), Positives = 847/847 (100%)
Query: 1 MSGRPAPVSRKQRLMAAVGERAAGGAPLSCFICGGGIGRGKELKLQVKQPAAGAGTPAQP 60
MSGRPAPVSRKQRLMAAVGERAAGGAPLSCFICGGGIGRGKELKLQVKQPAAGAGTPAQP
Sbjct: 1 MSGRPAPVSRKQRLMAAVGERAAGGAPLSCFICGGGIGRGKELKLQVKQPAAGAGTPAQP 60
Query: 61 FFPFLQQQEPAPGARELSPADGCVLVCAVCRCFLGEQWAAFERARTPVDKRMYWLKRPHQ 120
FFPFLQQQEPAPGARELSPADGCVLVCAVCRCFLGEQWAAFERARTPVDKRMYWLKRPHQ
Sbjct: 61 FFPFLQQQEPAPGARELSPADGCVLVCAVCRCFLGEQWAAFERARTPVDKRMYWLKRPHQ 120
Query: 121 CDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTD 180
CDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTD
Sbjct: 121 CDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTD 180
Query: 181 PLSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPA 240
PLSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPA
Sbjct: 181 PLSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPA 240
Query: 241 KAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMKGPPSGRA 300
KAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMKGPPSGRA
Sbjct: 241 KAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMKGPPSGRA 300
Query: 301 TKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPKEKNSGRVPRALQDSR 360
TKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPKEKNSGRVPRALQDSR
Sbjct: 301 TKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPKEKNSGRVPRALQDSR 360
Query: 361 AAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAPFFPFLWLHSPPPGAQPISEGGSTL 420
AAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAPFFPFLWLHSPPPGAQPISEGGSTL
Sbjct: 361 AAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAPFFPFLWLHSPPPGAQPISEGGSTL 420
Query: 421 VCASCFSSLTQQWQSFELANVPVLQRLYVVPLDSHAPGMASKGRRLPREEGLPSGALREA 480
VCASCFSSLTQQWQSFELANVPVLQRLYVVPLDSHAPGMASKGRRLPREEGLPSGALREA
Sbjct: 421 VCASCFSSLTQQWQSFELANVPVLQRLYVVPLDSHAPGMASKGRRLPREEGLPSGALREA 480
Query: 481 CYLCGEDCTPDARAVPSRILNGNARSAMHFPFLSLLPCPPNAQGPNKRCEVRSCPKCFSV 540
CYLCGEDCTPDARAVPSRILNGNARSAMHFPFLSLLPCPPNAQGPNKRCEVRSCPKCFSV
Sbjct: 481 CYLCGEDCTPDARAVPSRILNGNARSAMHFPFLSLLPCPPNAQGPNKRCEVRSCPKCFSV 540
Query: 541 LEDVWALYRACQNEELITSVQGFLGRYHQAFSASDPALSELPASAQGGPVSICYICGAEL 600
LEDVWALYRACQNEELITSVQGFLGRYHQAFSASDPALSELPASAQGGPVSICYICGAEL
Sbjct: 541 LEDVWALYRACQNEELITSVQGFLGRYHQAFSASDPALSELPASAQGGPVSICYICGAEL 600
Query: 601 GPGKEFQLNVNPASRLGEKEPFFPFLTVYPPAPRARPVDSTGLVATCVLCYHDLLAQWLQ 660
GPGKEFQLNVNPASRLGEKEPFFPFLTVYPPAPRARPVDSTGLVATCVLCYHDLLAQWLQ
Sbjct: 601 GPGKEFQLNVNPASRLGEKEPFFPFLTVYPPAPRARPVDSTGLVATCVLCYHDLLAQWLQ 660
Query: 661 HEARSSHHAVSAWSRQYQVETFVCFFCQQEKKRCLGLKSVRVARLPLFLYTLRASHSLLV 720
HEARSSHHAVSAWSRQYQVETFVCFFCQQEKKRCLGLKSVRVARLPLFLYTLRASHSLLV
Sbjct: 661 HEARSSHHAVSAWSRQYQVETFVCFFCQQEKKRCLGLKSVRVARLPLFLYTLRASHSLLV 720
Query: 721 DDGQQLIIGACVECGTLVCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDAAPPSLAASL 780
DDGQQLIIGACVECGTLVCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDAAPPSLAASL
Sbjct: 721 DDGQQLIIGACVECGTLVCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDAAPPSLAASL 780
Query: 781 SWHLFYLNYSHLDTEVSEVRRGKVTCPRPHRCQLQGQSAPFSAQLHTGFLYSNSRFGAMG 840
SWHLFYLNYSHLDTEVSEVRRGKVTCPRPHRCQLQGQSAPFSAQLHTGFLYSNSRFGAMG
Sbjct: 781 SWHLFYLNYSHLDTEVSEVRRGKVTCPRPHRCQLQGQSAPFSAQLHTGFLYSNSRFGAMG 840
Query: 841 LRDAPSQ 847
LRDAPSQ
Sbjct: 841 LRDAPSQ 847
>gi|113426528 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 847
Score = 1768 bits (4579), Expect = 0.0
Identities = 846/847 (99%), Positives = 847/847 (100%)
Query: 1 MSGRPAPVSRKQRLMAAVGERAAGGAPLSCFICGGGIGRGKELKLQVKQPAAGAGTPAQP 60
MSGRPAPVSRKQRLMAAVGERAAGGAPLSCFICGGGIGRGKELKLQVKQPAAGAGTPAQP
Sbjct: 1 MSGRPAPVSRKQRLMAAVGERAAGGAPLSCFICGGGIGRGKELKLQVKQPAAGAGTPAQP 60
Query: 61 FFPFLQQQEPAPGARELSPADGCVLVCAVCRCFLGEQWAAFERARTPVDKRMYWLKRPHQ 120
FFPFLQQQEPAPGARELSPADGCVLVCAVCRCFLGEQWAAFERARTPVDKRMYWLKRPHQ
Sbjct: 61 FFPFLQQQEPAPGARELSPADGCVLVCAVCRCFLGEQWAAFERARTPVDKRMYWLKRPHQ 120
Query: 121 CDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTD 180
CDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTD
Sbjct: 121 CDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTD 180
Query: 181 PLSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPA 240
PLSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPA
Sbjct: 181 PLSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPA 240
Query: 241 KAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMKGPPSGRA 300
KAHADGEPK+GVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMKGPPSGRA
Sbjct: 241 KAHADGEPKAGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMKGPPSGRA 300
Query: 301 TKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPKEKNSGRVPRALQDSR 360
TKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPKEKNSGRVPRALQDSR
Sbjct: 301 TKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPKEKNSGRVPRALQDSR 360
Query: 361 AAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAPFFPFLWLHSPPPGAQPISEGGSTL 420
AAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAPFFPFLWLHSPPPGAQPISEGGSTL
Sbjct: 361 AAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAPFFPFLWLHSPPPGAQPISEGGSTL 420
Query: 421 VCASCFSSLTQQWQSFELANVPVLQRLYVVPLDSHAPGMASKGRRLPREEGLPSGALREA 480
VCASCFSSLTQQWQSFELANVPVLQRLYVVPLDSHAPGMASKGRRLPREEGLPSGALREA
Sbjct: 421 VCASCFSSLTQQWQSFELANVPVLQRLYVVPLDSHAPGMASKGRRLPREEGLPSGALREA 480
Query: 481 CYLCGEDCTPDARAVPSRILNGNARSAMHFPFLSLLPCPPNAQGPNKRCEVRSCPKCFSV 540
CYLCGEDCTPDARAVPSRILNGNARSAMHFPFLSLLPCPPNAQGPNKRCEVRSCPKCFSV
Sbjct: 481 CYLCGEDCTPDARAVPSRILNGNARSAMHFPFLSLLPCPPNAQGPNKRCEVRSCPKCFSV 540
Query: 541 LEDVWALYRACQNEELITSVQGFLGRYHQAFSASDPALSELPASAQGGPVSICYICGAEL 600
LEDVWALYRACQNEELITSVQGFLGRYHQAFSASDPALSELPASAQGGPVSICYICGAEL
Sbjct: 541 LEDVWALYRACQNEELITSVQGFLGRYHQAFSASDPALSELPASAQGGPVSICYICGAEL 600
Query: 601 GPGKEFQLNVNPASRLGEKEPFFPFLTVYPPAPRARPVDSTGLVATCVLCYHDLLAQWLQ 660
GPGKEFQLNVNPASRLGEKEPFFPFLTVYPPAPRARPVDSTGLVATCVLCYHDLLAQWLQ
Sbjct: 601 GPGKEFQLNVNPASRLGEKEPFFPFLTVYPPAPRARPVDSTGLVATCVLCYHDLLAQWLQ 660
Query: 661 HEARSSHHAVSAWSRQYQVETFVCFFCQQEKKRCLGLKSVRVARLPLFLYTLRASHSLLV 720
HEARSSHHAVSAWSRQYQVETFVCFFCQQEKKRCLGLKSVRVARLPLFLYTLRASHSLLV
Sbjct: 661 HEARSSHHAVSAWSRQYQVETFVCFFCQQEKKRCLGLKSVRVARLPLFLYTLRASHSLLV 720
Query: 721 DDGQQLIIGACVECGTLVCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDAAPPSLAASL 780
DDGQQLIIGACVECGTLVCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDAAPPSLAASL
Sbjct: 721 DDGQQLIIGACVECGTLVCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDAAPPSLAASL 780
Query: 781 SWHLFYLNYSHLDTEVSEVRRGKVTCPRPHRCQLQGQSAPFSAQLHTGFLYSNSRFGAMG 840
SWHLFYLNYSHLDTEVSEVRRGKVTCPRPHRCQLQGQSAPFSAQLHTGFLYSNSRFGAMG
Sbjct: 781 SWHLFYLNYSHLDTEVSEVRRGKVTCPRPHRCQLQGQSAPFSAQLHTGFLYSNSRFGAMG 840
Query: 841 LRDAPSQ 847
LRDAPSQ
Sbjct: 841 LRDAPSQ 847
>gi|239756641 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 556
Score = 1162 bits (3005), Expect = 0.0
Identities = 556/556 (100%), Positives = 556/556 (100%)
Query: 292 MKGPPSGRATKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPKEKNSGR 351
MKGPPSGRATKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPKEKNSGR
Sbjct: 1 MKGPPSGRATKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPKEKNSGR 60
Query: 352 VPRALQDSRAAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAPFFPFLWLHSPPPGAQ 411
VPRALQDSRAAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAPFFPFLWLHSPPPGAQ
Sbjct: 61 VPRALQDSRAAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAPFFPFLWLHSPPPGAQ 120
Query: 412 PISEGGSTLVCASCFSSLTQQWQSFELANVPVLQRLYVVPLDSHAPGMASKGRRLPREEG 471
PISEGGSTLVCASCFSSLTQQWQSFELANVPVLQRLYVVPLDSHAPGMASKGRRLPREEG
Sbjct: 121 PISEGGSTLVCASCFSSLTQQWQSFELANVPVLQRLYVVPLDSHAPGMASKGRRLPREEG 180
Query: 472 LPSGALREACYLCGEDCTPDARAVPSRILNGNARSAMHFPFLSLLPCPPNAQGPNKRCEV 531
LPSGALREACYLCGEDCTPDARAVPSRILNGNARSAMHFPFLSLLPCPPNAQGPNKRCEV
Sbjct: 181 LPSGALREACYLCGEDCTPDARAVPSRILNGNARSAMHFPFLSLLPCPPNAQGPNKRCEV 240
Query: 532 RSCPKCFSVLEDVWALYRACQNEELITSVQGFLGRYHQAFSASDPALSELPASAQGGPVS 591
RSCPKCFSVLEDVWALYRACQNEELITSVQGFLGRYHQAFSASDPALSELPASAQGGPVS
Sbjct: 241 RSCPKCFSVLEDVWALYRACQNEELITSVQGFLGRYHQAFSASDPALSELPASAQGGPVS 300
Query: 592 ICYICGAELGPGKEFQLNVNPASRLGEKEPFFPFLTVYPPAPRARPVDSTGLVATCVLCY 651
ICYICGAELGPGKEFQLNVNPASRLGEKEPFFPFLTVYPPAPRARPVDSTGLVATCVLCY
Sbjct: 301 ICYICGAELGPGKEFQLNVNPASRLGEKEPFFPFLTVYPPAPRARPVDSTGLVATCVLCY 360
Query: 652 HDLLAQWLQHEARSSHHAVSAWSRQYQVETFVCFFCQQEKKRCLGLKSVRVARLPLFLYT 711
HDLLAQWLQHEARSSHHAVSAWSRQYQVETFVCFFCQQEKKRCLGLKSVRVARLPLFLYT
Sbjct: 361 HDLLAQWLQHEARSSHHAVSAWSRQYQVETFVCFFCQQEKKRCLGLKSVRVARLPLFLYT 420
Query: 712 LRASHSLLVDDGQQLIIGACVECGTLVCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDA 771
LRASHSLLVDDGQQLIIGACVECGTLVCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDA
Sbjct: 421 LRASHSLLVDDGQQLIIGACVECGTLVCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDA 480
Query: 772 APPSLAASLSWHLFYLNYSHLDTEVSEVRRGKVTCPRPHRCQLQGQSAPFSAQLHTGFLY 831
APPSLAASLSWHLFYLNYSHLDTEVSEVRRGKVTCPRPHRCQLQGQSAPFSAQLHTGFLY
Sbjct: 481 APPSLAASLSWHLFYLNYSHLDTEVSEVRRGKVTCPRPHRCQLQGQSAPFSAQLHTGFLY 540
Query: 832 SNSRFGAMGLRDAPSQ 847
SNSRFGAMGLRDAPSQ
Sbjct: 541 SNSRFGAMGLRDAPSQ 556
Score = 64.7 bits (156), Expect = 3e-10
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 21 RAAGGAPLSCFICGGGIGRGKELKLQVKQPAAGAGTPAQPFFPFLQQQEPAPGARELSPA 80
RAA L C+ICG + ++ V++ A P FFPFL P PGA+ +S
Sbjct: 69 RAAPAEGLCCYICGAPLSPASHHQVHVQKQEKLAQAP---FFPFLWLHSPPPGAQPISEG 125
Query: 81 DGCVLVCAVCRCFLGEQWAAFERARTPVDKRMY 113
G LVCA C L +QW +FE A PV +R+Y
Sbjct: 126 -GSTLVCASCFSSLTQQWQSFELANVPVLQRLY 157
Score = 58.5 bits (140), Expect = 2e-08
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 22 AAGGAPLS-CFICGGGIGRGKELKLQVKQPAAGAGTPAQPFFPFLQQQEPAPGARELSPA 80
+A G P+S C+ICG +G GKE +L V PA+ G +PFFPFL PAP AR + +
Sbjct: 293 SAQGGPVSICYICGAELGPGKEFQLNV-NPASRLG-EKEPFFPFLTVYPPAPRARPVD-S 349
Query: 81 DGCVLVCAVCRCFLGEQWAAFE 102
G V C +C L QW E
Sbjct: 350 TGLVATCVLCYHDLLAQWLQHE 371
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 53.5 bits (127), Expect = 8e-07
Identities = 57/205 (27%), Positives = 72/205 (35%), Gaps = 44/205 (21%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALG-----SATGDDDEDDGGGPRLRGAAEETRDSDLSEL 176
+AG GG +G G E A G GDD GP +
Sbjct: 1280 EAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGP-------------VGFP 1326
Query: 177 SDTDPLSEPDPPARDAASPH--QDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRA 233
D P EP P +D +DG PG PGP G G+ P P G A A+GR
Sbjct: 1327 GDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ 1386
Query: 234 EEEGLPAKAHADGEP----------------KSGVRRRRKGVGRHWVPEARASVLRSIQD 277
E+G +A A+G P G+R VG +P A QD
Sbjct: 1387 GEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAG------QD 1440
Query: 278 PWQGPLVQEAPADGMKGPPSGRATK 302
GP+ G+KG P + K
Sbjct: 1441 GPPGPMGPPG-LPGLKGDPGSKGEK 1464
Score = 42.4 bits (98), Expect = 0.002
Identities = 54/188 (28%), Positives = 68/188 (36%), Gaps = 22/188 (11%)
Query: 119 HQCDAGAGGRRGGAGAPREWNVAYALGSA--TGDDDEDDGGGPRLRGAAEETRDSDLSEL 176
H G G +G G P V G TG E GP + + E
Sbjct: 959 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1018
Query: 177 SDTDP----LSEPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEAS 228
+ DP +S D PA P + G PG PG +GG G + P P +PG E
Sbjct: 1019 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERG 1075
Query: 229 AQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP 288
+ G A GLP + G P KG P+ A +D QGP+ P
Sbjct: 1076 SAGTAGPIGLPGRPGPQGPPGPA---GEKGAPGEKGPQGPAG-----RDGVQGPVGLPGP 1127
Query: 289 ADGMKGPP 296
A G G P
Sbjct: 1128 A-GPAGSP 1134
Score = 38.1 bits (87), Expect = 0.035
Identities = 54/187 (28%), Positives = 67/187 (35%), Gaps = 20/187 (10%)
Query: 120 QCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPR----LRGAAEETRDSDLSE 175
Q GA G GG G P G GD+ GP L+G + E
Sbjct: 1167 QGPVGAPGIAGGDGEPGPRGQQGMFGQK-GDEGARGFPGPPGPIGLQGLPGPPGEK--GE 1223
Query: 176 LSDTDPLSEPDPPA-RDAASPH-QDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEASA 229
D P+ P PP R P+ DG GP G GG G++ P PG EA
Sbjct: 1224 NGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV 1283
Query: 230 QGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPA 289
G E G +A G P + KG P+ + DP GP + PA
Sbjct: 1284 GGPKGERGEKGEA---GPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP--GPPGEPGPA 1338
Query: 290 --DGMKG 294
DG+ G
Sbjct: 1339 GQDGVGG 1345
Score = 35.8 bits (81), Expect = 0.17
Identities = 59/209 (28%), Positives = 72/209 (34%), Gaps = 55/209 (26%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDD---EDDGGGPRLRGAAEETRDSDLSELSD 178
D G G RG G P GDD ED GPR G E L
Sbjct: 623 DKGHRGERGPQGPP----------GPPGDDGMRGEDGEIGPR--GLPGEAGPRGL----- 665
Query: 179 TDPLSEPDPPARDAASPHQDGAPGP-------GPRGGRGQEWRPAPGPAPG-QG-----A 225
P P P + + DG PGP G G GQ+ P P PG QG
Sbjct: 666 LGPRGTPGAPGQPGMAG-VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 724
Query: 226 EASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPW-QGPLV 284
E QG+ GLP ADG P H E ++ ++ P QGP+
Sbjct: 725 EKGPQGKPGLAGLPG---ADGPP------------GHPGKEGQSGEKGALGPPGPQGPIG 769
Query: 285 QEAP-----ADGMKGPPSGRATKTLESRP 308
P ADG++G + K + P
Sbjct: 770 YPGPRGVKGADGVRGLKGSKGEKGEDGFP 798
Score = 35.8 bits (81), Expect = 0.17
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 16/129 (12%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
D G+ G +G G + +G ++ D G P +G+ D + P
Sbjct: 1457 DPGSKGEKGHPG------LIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP--GPAGP 1508
Query: 182 LSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAE--------ASAQGRA 233
L P PP + GP G +G P P +PG E +S + R
Sbjct: 1509 LGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRR 1568
Query: 234 EEEGLPAKA 242
EG+ A A
Sbjct: 1569 HTEGMQADA 1577
Score = 35.4 bits (80), Expect = 0.22
Identities = 51/190 (26%), Positives = 63/190 (33%), Gaps = 15/190 (7%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGA-AEETRDSDLSELSDTDPL 182
G GG +G G P + G A G P GA + E P
Sbjct: 1342 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1401
Query: 183 SEPDP--PARDAASPHQDGAPG-PGP------RGGRGQEWRPAPGPAPGQGAEASAQGRA 233
+ P P A P +G G PGP G GQ+ P P PG G
Sbjct: 1402 GKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSK 1461
Query: 234 EEEGLPAKAHADGEP-KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGM 292
E+G P G P + G + R G P A+ I P GPL P G+
Sbjct: 1462 GEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGD--GGIPGP-AGPLGPPGP-PGL 1517
Query: 293 KGPPSGRATK 302
GP + K
Sbjct: 1518 PGPQGPKGNK 1527
Score = 35.0 bits (79), Expect = 0.29
Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 10/127 (7%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G+ G RG AG + G + G P +G + P+
Sbjct: 1069 GSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ-----GPVG 1123
Query: 184 EPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLP 239
P P A A SP +DG G PG +G +G + P PG A G A +G P
Sbjct: 1124 LPGP-AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEP 1182
Query: 240 AKAHADG 246
G
Sbjct: 1183 GPRGQQG 1189
Score = 33.5 bits (75), Expect = 0.85
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 195 PHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGE 247
P GA G PGP+G RG + P P PG+ A G G+P + A G+
Sbjct: 558 PGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADG---GRGMPGEPGAKGD 611
Score = 33.1 bits (74), Expect = 1.1
Identities = 51/196 (26%), Positives = 64/196 (32%), Gaps = 42/196 (21%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G+RG G PR A G G GP E + P
Sbjct: 889 GPRGQRGPTG-PRGSRGARGPTGKPGPKGTSGGDGPP-GPPGERGPQGPQGPVGFPGPKG 946
Query: 184 EPDPPARDAASPH-----------QDGAPGPG----PRGGRGQEWRPAPGPAPGQGAEAS 228
P PP +D H + G PGPG P+G G+ GP G+
Sbjct: 947 PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET-----GPI-GERGHPG 1000
Query: 229 AQGRAEEEGLPAKA---HADGEP-KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLV 284
G E+GLP A A G+P G+ + G P R P
Sbjct: 1001 PPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGL-----------PGA 1049
Query: 285 QEAP----ADGMKGPP 296
Q AP +G +GPP
Sbjct: 1050 QGAPGLKGGEGPQGPP 1065
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 198 DGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADG 246
DG PG PG +G RG+ P PG G GLP +A G
Sbjct: 615 DGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRG 664
Score = 32.0 bits (71), Expect = 2.5
Identities = 51/189 (26%), Positives = 64/189 (33%), Gaps = 40/189 (21%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G RG GA + L + G+ ED G P +G + D E+ P
Sbjct: 769 GYPGPRGVKGA----DGVRGLKGSKGEKGED--GFPGFKG--DMGLKGDRGEVGQIGPRG 820
Query: 184 EPDPPA-RDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKA 242
E P + A P D PGP G G++ + PG QG G P
Sbjct: 821 EDGPEGPKGRAGPTGD----PGPSGQAGEKGKLG---VPGLPGYPGRQGPKGSTGFPGFP 873
Query: 243 HADGEP-------KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP-----AD 290
A+GE K G R +R G AR GP + P D
Sbjct: 874 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGAR------------GPTGKPGPKGTSGGD 921
Query: 291 GMKGPPSGR 299
G GPP R
Sbjct: 922 GPPGPPGER 930
Score = 32.0 bits (71), Expect = 2.5
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSE---LSDT 179
+G G G G P E + A G+ E G P G+ E + + L
Sbjct: 1029 SGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGR 1088
Query: 180 DPLSEPDPPARDAASPHQDGAPGPGPRGG-RGQEWRPAP-GPA--PGQGAEASAQGRAEE 235
P PA + +P + G GP R G +G P P GPA PG+ + G +
Sbjct: 1089 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQ 1148
Query: 236 EGLPAKAHADGEP 248
+G +G P
Sbjct: 1149 KGSKGDKGENGPP 1161
Score = 31.2 bits (69), Expect = 4.2
Identities = 33/115 (28%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPR-LRGAAEETRDSDLSELSDTDPL 182
G G RG AG P G + GPR RGA T S D
Sbjct: 877 GEKGARGVAGKP-------------GPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGD-- 921
Query: 183 SEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEG 237
P PP Q PGP+G G + PGQ E QG+ G
Sbjct: 922 GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPG 976
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 53.5 bits (127), Expect = 8e-07
Identities = 57/205 (27%), Positives = 72/205 (35%), Gaps = 44/205 (21%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALG-----SATGDDDEDDGGGPRLRGAAEETRDSDLSEL 176
+AG GG +G G E A G GDD GP +
Sbjct: 1229 EAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGP-------------VGFP 1275
Query: 177 SDTDPLSEPDPPARDAASPH--QDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRA 233
D P EP P +D +DG PG PGP G G+ P P G A A+GR
Sbjct: 1276 GDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ 1335
Query: 234 EEEGLPAKAHADGEP----------------KSGVRRRRKGVGRHWVPEARASVLRSIQD 277
E+G +A A+G P G+R VG +P A QD
Sbjct: 1336 GEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAG------QD 1389
Query: 278 PWQGPLVQEAPADGMKGPPSGRATK 302
GP+ G+KG P + K
Sbjct: 1390 GPPGPMGPPG-LPGLKGDPGSKGEK 1413
Score = 42.4 bits (98), Expect = 0.002
Identities = 54/188 (28%), Positives = 68/188 (36%), Gaps = 22/188 (11%)
Query: 119 HQCDAGAGGRRGGAGAPREWNVAYALGSA--TGDDDEDDGGGPRLRGAAEETRDSDLSEL 176
H G G +G G P V G TG E GP + + E
Sbjct: 908 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 967
Query: 177 SDTDP----LSEPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEAS 228
+ DP +S D PA P + G PG PG +GG G + P P +PG E
Sbjct: 968 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERG 1024
Query: 229 AQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP 288
+ G A GLP + G P KG P+ A +D QGP+ P
Sbjct: 1025 SAGTAGPIGLPGRPGPQGPPGPA---GEKGAPGEKGPQGPAG-----RDGVQGPVGLPGP 1076
Query: 289 ADGMKGPP 296
A G G P
Sbjct: 1077 A-GPAGSP 1083
Score = 38.1 bits (87), Expect = 0.035
Identities = 54/187 (28%), Positives = 67/187 (35%), Gaps = 20/187 (10%)
Query: 120 QCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPR----LRGAAEETRDSDLSE 175
Q GA G GG G P G GD+ GP L+G + E
Sbjct: 1116 QGPVGAPGIAGGDGEPGPRGQQGMFGQK-GDEGARGFPGPPGPIGLQGLPGPPGEK--GE 1172
Query: 176 LSDTDPLSEPDPPA-RDAASPH-QDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEASA 229
D P+ P PP R P+ DG GP G GG G++ P PG EA
Sbjct: 1173 NGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV 1232
Query: 230 QGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPA 289
G E G +A G P + KG P+ + DP GP + PA
Sbjct: 1233 GGPKGERGEKGEA---GPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP--GPPGEPGPA 1287
Query: 290 --DGMKG 294
DG+ G
Sbjct: 1288 GQDGVGG 1294
Score = 35.8 bits (81), Expect = 0.17
Identities = 59/209 (28%), Positives = 72/209 (34%), Gaps = 55/209 (26%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDD---EDDGGGPRLRGAAEETRDSDLSELSD 178
D G G RG G P GDD ED GPR G E L
Sbjct: 572 DKGHRGERGPQGPP----------GPPGDDGMRGEDGEIGPR--GLPGEAGPRGL----- 614
Query: 179 TDPLSEPDPPARDAASPHQDGAPGP-------GPRGGRGQEWRPAPGPAPG-QG-----A 225
P P P + + DG PGP G G GQ+ P P PG QG
Sbjct: 615 LGPRGTPGAPGQPGMAG-VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 673
Query: 226 EASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPW-QGPLV 284
E QG+ GLP ADG P H E ++ ++ P QGP+
Sbjct: 674 EKGPQGKPGLAGLPG---ADGPP------------GHPGKEGQSGEKGALGPPGPQGPIG 718
Query: 285 QEAP-----ADGMKGPPSGRATKTLESRP 308
P ADG++G + K + P
Sbjct: 719 YPGPRGVKGADGVRGLKGSKGEKGEDGFP 747
Score = 35.8 bits (81), Expect = 0.17
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 16/129 (12%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
D G+ G +G G + +G ++ D G P +G+ D + P
Sbjct: 1406 DPGSKGEKGHPG------LIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP--GPAGP 1457
Query: 182 LSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAE--------ASAQGRA 233
L P PP + GP G +G P P +PG E +S + R
Sbjct: 1458 LGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRR 1517
Query: 234 EEEGLPAKA 242
EG+ A A
Sbjct: 1518 HTEGMQADA 1526
Score = 35.4 bits (80), Expect = 0.22
Identities = 51/190 (26%), Positives = 63/190 (33%), Gaps = 15/190 (7%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGA-AEETRDSDLSELSDTDPL 182
G GG +G G P + G A G P GA + E P
Sbjct: 1291 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1350
Query: 183 SEPDP--PARDAASPHQDGAPG-PGP------RGGRGQEWRPAPGPAPGQGAEASAQGRA 233
+ P P A P +G G PGP G GQ+ P P PG G
Sbjct: 1351 GKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSK 1410
Query: 234 EEEGLPAKAHADGEP-KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGM 292
E+G P G P + G + R G P A+ I P GPL P G+
Sbjct: 1411 GEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGD--GGIPGP-AGPLGPPGP-PGL 1466
Query: 293 KGPPSGRATK 302
GP + K
Sbjct: 1467 PGPQGPKGNK 1476
Score = 35.0 bits (79), Expect = 0.29
Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 10/127 (7%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G+ G RG AG + G + G P +G + P+
Sbjct: 1018 GSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ-----GPVG 1072
Query: 184 EPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLP 239
P P A A SP +DG G PG +G +G + P PG A G A +G P
Sbjct: 1073 LPGP-AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEP 1131
Query: 240 AKAHADG 246
G
Sbjct: 1132 GPRGQQG 1138
Score = 33.5 bits (75), Expect = 0.85
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 195 PHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGE 247
P GA G PGP+G RG + P P PG+ A G G+P + A G+
Sbjct: 507 PGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADG---GRGMPGEPGAKGD 560
Score = 33.1 bits (74), Expect = 1.1
Identities = 51/196 (26%), Positives = 64/196 (32%), Gaps = 42/196 (21%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G+RG G PR A G G GP E + P
Sbjct: 838 GPRGQRGPTG-PRGSRGARGPTGKPGPKGTSGGDGPP-GPPGERGPQGPQGPVGFPGPKG 895
Query: 184 EPDPPARDAASPH-----------QDGAPGPG----PRGGRGQEWRPAPGPAPGQGAEAS 228
P PP +D H + G PGPG P+G G+ GP G+
Sbjct: 896 PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET-----GPI-GERGHPG 949
Query: 229 AQGRAEEEGLPAKA---HADGEP-KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLV 284
G E+GLP A A G+P G+ + G P R P
Sbjct: 950 PPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGL-----------PGA 998
Query: 285 QEAP----ADGMKGPP 296
Q AP +G +GPP
Sbjct: 999 QGAPGLKGGEGPQGPP 1014
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 198 DGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADG 246
DG PG PG +G RG+ P PG G GLP +A G
Sbjct: 564 DGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRG 613
Score = 32.0 bits (71), Expect = 2.5
Identities = 51/189 (26%), Positives = 64/189 (33%), Gaps = 40/189 (21%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G RG GA + L + G+ ED G P +G + D E+ P
Sbjct: 718 GYPGPRGVKGA----DGVRGLKGSKGEKGED--GFPGFKG--DMGLKGDRGEVGQIGPRG 769
Query: 184 EPDPPA-RDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKA 242
E P + A P D PGP G G++ + PG QG G P
Sbjct: 770 EDGPEGPKGRAGPTGD----PGPSGQAGEKGKLG---VPGLPGYPGRQGPKGSTGFPGFP 822
Query: 243 HADGEP-------KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP-----AD 290
A+GE K G R +R G AR GP + P D
Sbjct: 823 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGAR------------GPTGKPGPKGTSGGD 870
Query: 291 GMKGPPSGR 299
G GPP R
Sbjct: 871 GPPGPPGER 879
Score = 32.0 bits (71), Expect = 2.5
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSE---LSDT 179
+G G G G P E + A G+ E G P G+ E + + L
Sbjct: 978 SGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGR 1037
Query: 180 DPLSEPDPPARDAASPHQDGAPGPGPRGG-RGQEWRPAP-GPA--PGQGAEASAQGRAEE 235
P PA + +P + G GP R G +G P P GPA PG+ + G +
Sbjct: 1038 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQ 1097
Query: 236 EGLPAKAHADGEP 248
+G +G P
Sbjct: 1098 KGSKGDKGENGPP 1110
Score = 31.2 bits (69), Expect = 4.2
Identities = 33/115 (28%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPR-LRGAAEETRDSDLSELSDTDPL 182
G G RG AG P G + GPR RGA T S D
Sbjct: 826 GEKGARGVAGKP-------------GPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGD-- 870
Query: 183 SEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEG 237
P PP Q PGP+G G + PGQ E QG+ G
Sbjct: 871 GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPG 925
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 53.5 bits (127), Expect = 8e-07
Identities = 57/205 (27%), Positives = 72/205 (35%), Gaps = 44/205 (21%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALG-----SATGDDDEDDGGGPRLRGAAEETRDSDLSEL 176
+AG GG +G G E A G GDD GP +
Sbjct: 1268 EAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGP-------------VGFP 1314
Query: 177 SDTDPLSEPDPPARDAASPH--QDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRA 233
D P EP P +D +DG PG PGP G G+ P P G A A+GR
Sbjct: 1315 GDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ 1374
Query: 234 EEEGLPAKAHADGEP----------------KSGVRRRRKGVGRHWVPEARASVLRSIQD 277
E+G +A A+G P G+R VG +P A QD
Sbjct: 1375 GEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAG------QD 1428
Query: 278 PWQGPLVQEAPADGMKGPPSGRATK 302
GP+ G+KG P + K
Sbjct: 1429 GPPGPMGPPG-LPGLKGDPGSKGEK 1452
Score = 42.4 bits (98), Expect = 0.002
Identities = 54/188 (28%), Positives = 68/188 (36%), Gaps = 22/188 (11%)
Query: 119 HQCDAGAGGRRGGAGAPREWNVAYALGSA--TGDDDEDDGGGPRLRGAAEETRDSDLSEL 176
H G G +G G P V G TG E GP + + E
Sbjct: 947 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1006
Query: 177 SDTDP----LSEPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEAS 228
+ DP +S D PA P + G PG PG +GG G + P P +PG E
Sbjct: 1007 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERG 1063
Query: 229 AQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP 288
+ G A GLP + G P KG P+ A +D QGP+ P
Sbjct: 1064 SAGTAGPIGLPGRPGPQGPPGPA---GEKGAPGEKGPQGPAG-----RDGVQGPVGLPGP 1115
Query: 289 ADGMKGPP 296
A G G P
Sbjct: 1116 A-GPAGSP 1122
Score = 38.1 bits (87), Expect = 0.035
Identities = 54/187 (28%), Positives = 67/187 (35%), Gaps = 20/187 (10%)
Query: 120 QCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPR----LRGAAEETRDSDLSE 175
Q GA G GG G P G GD+ GP L+G + E
Sbjct: 1155 QGPVGAPGIAGGDGEPGPRGQQGMFGQK-GDEGARGFPGPPGPIGLQGLPGPPGEK--GE 1211
Query: 176 LSDTDPLSEPDPPA-RDAASPH-QDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEASA 229
D P+ P PP R P+ DG GP G GG G++ P PG EA
Sbjct: 1212 NGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV 1271
Query: 230 QGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPA 289
G E G +A G P + KG P+ + DP GP + PA
Sbjct: 1272 GGPKGERGEKGEA---GPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP--GPPGEPGPA 1326
Query: 290 --DGMKG 294
DG+ G
Sbjct: 1327 GQDGVGG 1333
Score = 35.8 bits (81), Expect = 0.17
Identities = 59/209 (28%), Positives = 72/209 (34%), Gaps = 55/209 (26%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDD---EDDGGGPRLRGAAEETRDSDLSELSD 178
D G G RG G P GDD ED GPR G E L
Sbjct: 611 DKGHRGERGPQGPP----------GPPGDDGMRGEDGEIGPR--GLPGEAGPRGL----- 653
Query: 179 TDPLSEPDPPARDAASPHQDGAPGP-------GPRGGRGQEWRPAPGPAPG-QG-----A 225
P P P + + DG PGP G G GQ+ P P PG QG
Sbjct: 654 LGPRGTPGAPGQPGMAG-VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 712
Query: 226 EASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPW-QGPLV 284
E QG+ GLP ADG P H E ++ ++ P QGP+
Sbjct: 713 EKGPQGKPGLAGLPG---ADGPP------------GHPGKEGQSGEKGALGPPGPQGPIG 757
Query: 285 QEAP-----ADGMKGPPSGRATKTLESRP 308
P ADG++G + K + P
Sbjct: 758 YPGPRGVKGADGVRGLKGSKGEKGEDGFP 786
Score = 35.8 bits (81), Expect = 0.17
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 16/129 (12%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
D G+ G +G G + +G ++ D G P +G+ D + P
Sbjct: 1445 DPGSKGEKGHPG------LIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP--GPAGP 1496
Query: 182 LSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAE--------ASAQGRA 233
L P PP + GP G +G P P +PG E +S + R
Sbjct: 1497 LGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRR 1556
Query: 234 EEEGLPAKA 242
EG+ A A
Sbjct: 1557 HTEGMQADA 1565
Score = 35.4 bits (80), Expect = 0.22
Identities = 51/190 (26%), Positives = 63/190 (33%), Gaps = 15/190 (7%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGA-AEETRDSDLSELSDTDPL 182
G GG +G G P + G A G P GA + E P
Sbjct: 1330 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1389
Query: 183 SEPDP--PARDAASPHQDGAPG-PGP------RGGRGQEWRPAPGPAPGQGAEASAQGRA 233
+ P P A P +G G PGP G GQ+ P P PG G
Sbjct: 1390 GKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSK 1449
Query: 234 EEEGLPAKAHADGEP-KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGM 292
E+G P G P + G + R G P A+ I P GPL P G+
Sbjct: 1450 GEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGD--GGIPGP-AGPLGPPGP-PGL 1505
Query: 293 KGPPSGRATK 302
GP + K
Sbjct: 1506 PGPQGPKGNK 1515
Score = 35.0 bits (79), Expect = 0.29
Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 10/127 (7%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G+ G RG AG + G + G P +G + P+
Sbjct: 1057 GSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ-----GPVG 1111
Query: 184 EPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLP 239
P P A A SP +DG G PG +G +G + P PG A G A +G P
Sbjct: 1112 LPGP-AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEP 1170
Query: 240 AKAHADG 246
G
Sbjct: 1171 GPRGQQG 1177
Score = 33.5 bits (75), Expect = 0.85
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 195 PHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGE 247
P GA G PGP+G RG + P P PG+ A G G+P + A G+
Sbjct: 546 PGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADG---GRGMPGEPGAKGD 599
Score = 33.1 bits (74), Expect = 1.1
Identities = 51/196 (26%), Positives = 64/196 (32%), Gaps = 42/196 (21%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G+RG G PR A G G GP E + P
Sbjct: 877 GPRGQRGPTG-PRGSRGARGPTGKPGPKGTSGGDGPP-GPPGERGPQGPQGPVGFPGPKG 934
Query: 184 EPDPPARDAASPH-----------QDGAPGPG----PRGGRGQEWRPAPGPAPGQGAEAS 228
P PP +D H + G PGPG P+G G+ GP G+
Sbjct: 935 PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET-----GPI-GERGHPG 988
Query: 229 AQGRAEEEGLPAKA---HADGEP-KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLV 284
G E+GLP A A G+P G+ + G P R P
Sbjct: 989 PPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGL-----------PGA 1037
Query: 285 QEAP----ADGMKGPP 296
Q AP +G +GPP
Sbjct: 1038 QGAPGLKGGEGPQGPP 1053
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 198 DGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADG 246
DG PG PG +G RG+ P PG G GLP +A G
Sbjct: 603 DGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRG 652
Score = 32.0 bits (71), Expect = 2.5
Identities = 51/189 (26%), Positives = 64/189 (33%), Gaps = 40/189 (21%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G RG GA + L + G+ ED G P +G + D E+ P
Sbjct: 757 GYPGPRGVKGA----DGVRGLKGSKGEKGED--GFPGFKG--DMGLKGDRGEVGQIGPRG 808
Query: 184 EPDPPA-RDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKA 242
E P + A P D PGP G G++ + PG QG G P
Sbjct: 809 EDGPEGPKGRAGPTGD----PGPSGQAGEKGKLG---VPGLPGYPGRQGPKGSTGFPGFP 861
Query: 243 HADGEP-------KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP-----AD 290
A+GE K G R +R G AR GP + P D
Sbjct: 862 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGAR------------GPTGKPGPKGTSGGD 909
Query: 291 GMKGPPSGR 299
G GPP R
Sbjct: 910 GPPGPPGER 918
Score = 32.0 bits (71), Expect = 2.5
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSE---LSDT 179
+G G G G P E + A G+ E G P G+ E + + L
Sbjct: 1017 SGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGR 1076
Query: 180 DPLSEPDPPARDAASPHQDGAPGPGPRGG-RGQEWRPAP-GPA--PGQGAEASAQGRAEE 235
P PA + +P + G GP R G +G P P GPA PG+ + G +
Sbjct: 1077 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQ 1136
Query: 236 EGLPAKAHADGEP 248
+G +G P
Sbjct: 1137 KGSKGDKGENGPP 1149
Score = 31.2 bits (69), Expect = 4.2
Identities = 33/115 (28%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPR-LRGAAEETRDSDLSELSDTDPL 182
G G RG AG P G + GPR RGA T S D
Sbjct: 865 GEKGARGVAGKP-------------GPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGD-- 909
Query: 183 SEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEG 237
P PP Q PGP+G G + PGQ E QG+ G
Sbjct: 910 GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPG 964
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 48.1 bits (113), Expect = 3e-05
Identities = 41/126 (32%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G G GAP E + G + D G P L GA T D P
Sbjct: 519 GQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT-----GRPGDAGPQG 573
Query: 184 EPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKA 242
+ P + +P +DG PGP GP+G RGQ P PG G+A E+GLP
Sbjct: 574 KVGP----SGAPGEDGRPGPPGPQGARGQ---PGVMGFPGPKGANGEPGKAGEKGLPGAP 626
Query: 243 HADGEP 248
G P
Sbjct: 627 GLRGLP 632
Score = 42.7 bits (99), Expect = 0.001
Identities = 62/224 (27%), Positives = 76/224 (33%), Gaps = 26/224 (11%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G RG G P V G D + + G P ++G E + P
Sbjct: 270 GPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG--ESGSPGENGSPGPMGPRG 327
Query: 184 EPDP-----PARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEG 237
P PA A + DG PGP GP G G P APG EA G EG
Sbjct: 328 LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEG 387
Query: 238 LPAKAHADGEPKS-GVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPA-DGMKGP 295
G P S G G +P A+ S P + AP G +GP
Sbjct: 388 AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSA--------GAPGIAGAPGFPGPRGP 439
Query: 296 PSGRATKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFP 339
P G T P G+T + I GE+ K +P P
Sbjct: 440 P-GPQGATGPLGPKGQT-------GEPGIAGFKGEQGPKGEPGP 475
Score = 40.8 bits (94), Expect = 0.005
Identities = 43/135 (31%), Positives = 52/135 (38%), Gaps = 18/135 (13%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+AGA G +G +G+P E +G G E GP A R +D P
Sbjct: 301 EAGAPGVKGESGSPGENGSPGPMG-PRGLPGERGRTGP---AGAAGARGND----GQPGP 352
Query: 182 LSEPDPPARDAASPHQDGAPG----PGPRGGRGQEW----RPAPGPAPGQGAEASAQGRA 233
P P A P GAPG GP G RG E R PG PG A A G
Sbjct: 353 AGPPG-PVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG-TPGSPGPAGASGNP 410
Query: 234 EEEGLPAKAHADGEP 248
+G+P + G P
Sbjct: 411 GTDGIPGAKGSAGAP 425
Score = 40.4 bits (93), Expect = 0.007
Identities = 55/204 (26%), Positives = 72/204 (35%), Gaps = 37/204 (18%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEET--RDSDLSELSDTD 180
AGA G RG G P +G A G G P +G A T R + ++ +
Sbjct: 338 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFP---GAPGAKGEAGPTGARGPEGAQGPRGE 394
Query: 181 PLSEPDP-PARDAASPHQDGAPG----------------------PGPRGG------RGQ 211
P + P PA + +P DG PG PGP+G +GQ
Sbjct: 395 PGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQ 454
Query: 212 EWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASV 271
P G+ G A +G P A +G K G R GVG P R +
Sbjct: 455 TGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEG--KRGARGEPGGVGPIGPPGERGAP 512
Query: 272 LRSIQDPWQGPLVQEAPADGMKGP 295
+ P Q L A G +GP
Sbjct: 513 -GNRGFPGQDGLAGPKGAPGERGP 535
Score = 39.3 bits (90), Expect = 0.016
Identities = 39/148 (26%), Positives = 47/148 (31%), Gaps = 23/148 (15%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
DAGA G +G +GAP G + G GAA R + P
Sbjct: 859 DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG--RVGPPGSNGNPGP 916
Query: 182 LSEPDPPARD--------AASPHQDGAPG-------------PGPRGGRGQEWRPAPGPA 220
P P +D + P + G PG PG G G E P P
Sbjct: 917 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 976
Query: 221 PGQGAEASAQGRAEEEGLPAKAHADGEP 248
GQ G+ E G P GEP
Sbjct: 977 AGQRGIVGLPGQRGERGFPGLPGPSGEP 1004
Score = 38.1 bits (87), Expect = 0.035
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 181 PLSEPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLP 239
P P P +P + G PG GP G RG P P PG EA G+A E G P
Sbjct: 214 PAGAPGPQGFQG-NPGEPGEPGVSGPMGPRGP---PGPPGKPGDDGEAGKPGKAGERGPP 269
Query: 240 AKAHADGEP 248
A G P
Sbjct: 270 GPQGARGFP 278
Score = 38.1 bits (87), Expect = 0.035
Identities = 38/144 (26%), Positives = 49/144 (34%), Gaps = 19/144 (13%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
DAG G+ G +GAP E G G P +GA E + L
Sbjct: 568 DAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPG 627
Query: 182 L------------SEPDPPARDAASPHQDGAPGP-------GPRGGRGQEWRPAPGPAPG 222
L + P PA A + GAPGP GP G G+ +P PG
Sbjct: 628 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 687
Query: 223 QGAEASAQGRAEEEGLPAKAHADG 246
+ G E G P + + G
Sbjct: 688 EAGAPGLVGPRGERGFPGERGSPG 711
Score = 38.1 bits (87), Expect = 0.035
Identities = 58/225 (25%), Positives = 72/225 (32%), Gaps = 35/225 (15%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G+ G G G P G+ G P L+G A + E D P
Sbjct: 909 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEK--GEPGDDGPSG 966
Query: 184 EPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPG-QGAEASA------------- 229
PP + + PG RG RG P P PG QGA ++
Sbjct: 967 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 1026
Query: 230 -QGRAEEEGLPAKAHADGEP----KSGVRRRRKGVGRHWVPEA--------RASVLRSIQ 276
G A E G ADG P +GV+ R G P A A
Sbjct: 1027 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1086
Query: 277 DPW----QGPLVQEAPAD--GMKGPPSGRATKTLESRPLGETLRG 315
D QGP+ PA G++GP R K P L+G
Sbjct: 1087 DRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKG 1131
Score = 37.7 bits (86), Expect = 0.045
Identities = 53/190 (27%), Positives = 70/190 (36%), Gaps = 24/190 (12%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLS-ELSDTDPL 182
GA G +G G P G++ G P L+G E + ++ D +
Sbjct: 711 GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV 770
Query: 183 SEPDPPARDAASPHQDGAPG-------PGPRGGRGQEWRPA-PGPAPGQGAEASAQGRAE 234
E P +P +DG G PGP G G++ PGPA GA A G
Sbjct: 771 GEKGPEG----APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGAR-GAPGERG 825
Query: 235 EEGLPAKA------HADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP 288
E G P A ADG+P G + + G+ A S QGP P
Sbjct: 826 ETGPPGPAGFAGPPGADGQP--GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGP 883
Query: 289 --ADGMKGPP 296
A G +GPP
Sbjct: 884 KGARGAQGPP 893
Score = 36.6 bits (83), Expect = 0.10
Identities = 35/134 (26%), Positives = 42/134 (31%), Gaps = 1/134 (0%)
Query: 120 QCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDT 179
Q D G G +G G G D+ + G P RG + L L
Sbjct: 1085 QGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1144
Query: 180 DPLSEPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGL 238
S + A G PGP GP G G P P PG + G A G
Sbjct: 1145 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN 1204
Query: 239 PAKAHADGEPKSGV 252
P G P G+
Sbjct: 1205 PGPPGPPGPPGPGI 1218
Score = 35.0 bits (79), Expect = 0.29
Identities = 54/199 (27%), Positives = 62/199 (31%), Gaps = 30/199 (15%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
GA G+ GG G G A G+ E GP A + E P
Sbjct: 777 GAPGKDGGRGLTGPIGPPGPAG-ANGEKGEVGPPGPA-GSAGARGAPGERGETGPPGPAG 834
Query: 184 EPDPPARD-----------AASPHQDGAPGP-GPRGGRGQEW----------RPAPGPAP 221
PP D A GAPGP GP G G + R A GP P
Sbjct: 835 FAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGP-P 893
Query: 222 GQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQG 281
G A GR G G P + KG P RA +Q P
Sbjct: 894 GATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGE-PGLQGPAGP 952
Query: 282 PLVQEAPAD----GMKGPP 296
P + P D G +GPP
Sbjct: 953 PGEKGEPGDDGPSGAEGPP 971
Score = 33.1 bits (74), Expect = 1.1
Identities = 43/163 (26%), Positives = 53/163 (32%), Gaps = 37/163 (22%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAE------ETRDSDLSEL 176
AGA G G G P A A G A G P +GA +T + ++
Sbjct: 404 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGF 463
Query: 177 S-DTDPLSEPDP--------PARDAASPHQDGAPG-------------PGPRGGRGQEWR 214
+ P EP P PA + G PG PG RG GQ+
Sbjct: 464 KGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 523
Query: 215 PAPGPAPGQGAEASAQG---------RAEEEGLPAKAHADGEP 248
P APG+ + G R E GLP G P
Sbjct: 524 AGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP 566
Score = 32.3 bits (72), Expect = 1.9
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 181 PLSEPDPPAR-----DAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAE 234
P P PP + +A P + G GP GP+G RG P G G
Sbjct: 241 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG 300
Query: 235 EEGLPAKAHADGEP 248
E G P G P
Sbjct: 301 EAGAPGVKGESGSP 314
Score = 30.4 bits (67), Expect = 7.2
Identities = 34/134 (25%), Positives = 40/134 (29%), Gaps = 20/134 (14%)
Query: 130 GGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLSEPDPP- 188
G G P A G D+ + G P RG RD + + P P PP
Sbjct: 117 GPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRG-----RDGEPGTPGNPGPPGPPGPPG 171
Query: 189 --------ARDAASPHQDGAPGP------GPRGGRGQEWRPAPGPAPGQGAEASAQGRAE 234
A A + A G GP G G P P APG G
Sbjct: 172 PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 231
Query: 235 EEGLPAKAHADGEP 248
E G+ G P
Sbjct: 232 EPGVSGPMGPRGPP 245
Score = 30.4 bits (67), Expect = 7.2
Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 14/115 (12%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G +G AG P E + G TG GP + ++ P
Sbjct: 1113 GPRGDKGEAGEPGERGLKGHRGF-TGLQGLPGPPGP----SGDQGASGPAGPSGPRGPPG 1167
Query: 184 EPDPPARDAAS--PHQDGAPGP-------GPRGGRGQEWRPAPGPAPGQGAEASA 229
P +D A+ P G PGP GP G G P P PG G + SA
Sbjct: 1168 PVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSA 1222
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 48.1 bits (113), Expect = 3e-05
Identities = 41/126 (32%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G G GAP E + G + D G P L GA T D P
Sbjct: 450 GQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT-----GRPGDAGPQG 504
Query: 184 EPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKA 242
+ P + +P +DG PGP GP+G RGQ P PG G+A E+GLP
Sbjct: 505 KVGP----SGAPGEDGRPGPPGPQGARGQ---PGVMGFPGPKGANGEPGKAGEKGLPGAP 557
Query: 243 HADGEP 248
G P
Sbjct: 558 GLRGLP 563
Score = 42.7 bits (99), Expect = 0.001
Identities = 62/224 (27%), Positives = 76/224 (33%), Gaps = 26/224 (11%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G RG G P V G D + + G P ++G E + P
Sbjct: 201 GPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG--ESGSPGENGSPGPMGPRG 258
Query: 184 EPDP-----PARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEG 237
P PA A + DG PGP GP G G P APG EA G EG
Sbjct: 259 LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEG 318
Query: 238 LPAKAHADGEPKS-GVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPA-DGMKGP 295
G P S G G +P A+ S P + AP G +GP
Sbjct: 319 AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSA--------GAPGIAGAPGFPGPRGP 370
Query: 296 PSGRATKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFP 339
P G T P G+T + I GE+ K +P P
Sbjct: 371 P-GPQGATGPLGPKGQT-------GEPGIAGFKGEQGPKGEPGP 406
Score = 40.8 bits (94), Expect = 0.005
Identities = 43/135 (31%), Positives = 52/135 (38%), Gaps = 18/135 (13%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+AGA G +G +G+P E +G G E GP A R +D P
Sbjct: 232 EAGAPGVKGESGSPGENGSPGPMG-PRGLPGERGRTGP---AGAAGARGND----GQPGP 283
Query: 182 LSEPDPPARDAASPHQDGAPG----PGPRGGRGQEW----RPAPGPAPGQGAEASAQGRA 233
P P A P GAPG GP G RG E R PG PG A A G
Sbjct: 284 AGPPG-PVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG-TPGSPGPAGASGNP 341
Query: 234 EEEGLPAKAHADGEP 248
+G+P + G P
Sbjct: 342 GTDGIPGAKGSAGAP 356
Score = 40.4 bits (93), Expect = 0.007
Identities = 55/204 (26%), Positives = 72/204 (35%), Gaps = 37/204 (18%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEET--RDSDLSELSDTD 180
AGA G RG G P +G A G G P +G A T R + ++ +
Sbjct: 269 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFP---GAPGAKGEAGPTGARGPEGAQGPRGE 325
Query: 181 PLSEPDP-PARDAASPHQDGAPG----------------------PGPRGG------RGQ 211
P + P PA + +P DG PG PGP+G +GQ
Sbjct: 326 PGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQ 385
Query: 212 EWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASV 271
P G+ G A +G P A +G K G R GVG P R +
Sbjct: 386 TGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEG--KRGARGEPGGVGPIGPPGERGAP 443
Query: 272 LRSIQDPWQGPLVQEAPADGMKGP 295
+ P Q L A G +GP
Sbjct: 444 -GNRGFPGQDGLAGPKGAPGERGP 466
Score = 39.3 bits (90), Expect = 0.016
Identities = 39/148 (26%), Positives = 47/148 (31%), Gaps = 23/148 (15%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
DAGA G +G +GAP G + G GAA R + P
Sbjct: 790 DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG--RVGPPGSNGNPGP 847
Query: 182 LSEPDPPARD--------AASPHQDGAPG-------------PGPRGGRGQEWRPAPGPA 220
P P +D + P + G PG PG G G E P P
Sbjct: 848 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 907
Query: 221 PGQGAEASAQGRAEEEGLPAKAHADGEP 248
GQ G+ E G P GEP
Sbjct: 908 AGQRGIVGLPGQRGERGFPGLPGPSGEP 935
Score = 38.1 bits (87), Expect = 0.035
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 181 PLSEPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLP 239
P P P +P + G PG GP G RG P P PG EA G+A E G P
Sbjct: 145 PAGAPGPQGFQG-NPGEPGEPGVSGPMGPRGP---PGPPGKPGDDGEAGKPGKAGERGPP 200
Query: 240 AKAHADGEP 248
A G P
Sbjct: 201 GPQGARGFP 209
Score = 38.1 bits (87), Expect = 0.035
Identities = 38/144 (26%), Positives = 49/144 (34%), Gaps = 19/144 (13%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
DAG G+ G +GAP E G G P +GA E + L
Sbjct: 499 DAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPG 558
Query: 182 L------------SEPDPPARDAASPHQDGAPGP-------GPRGGRGQEWRPAPGPAPG 222
L + P PA A + GAPGP GP G G+ +P PG
Sbjct: 559 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 618
Query: 223 QGAEASAQGRAEEEGLPAKAHADG 246
+ G E G P + + G
Sbjct: 619 EAGAPGLVGPRGERGFPGERGSPG 642
Score = 38.1 bits (87), Expect = 0.035
Identities = 58/225 (25%), Positives = 72/225 (32%), Gaps = 35/225 (15%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G+ G G G P G+ G P L+G A + E D P
Sbjct: 840 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEK--GEPGDDGPSG 897
Query: 184 EPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPG-QGAEASA------------- 229
PP + + PG RG RG P P PG QGA ++
Sbjct: 898 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 957
Query: 230 -QGRAEEEGLPAKAHADGEP----KSGVRRRRKGVGRHWVPEA--------RASVLRSIQ 276
G A E G ADG P +GV+ R G P A A
Sbjct: 958 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1017
Query: 277 DPW----QGPLVQEAPAD--GMKGPPSGRATKTLESRPLGETLRG 315
D QGP+ PA G++GP R K P L+G
Sbjct: 1018 DRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKG 1062
Score = 37.7 bits (86), Expect = 0.045
Identities = 53/190 (27%), Positives = 70/190 (36%), Gaps = 24/190 (12%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLS-ELSDTDPL 182
GA G +G G P G++ G P L+G E + ++ D +
Sbjct: 642 GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV 701
Query: 183 SEPDPPARDAASPHQDGAPG-------PGPRGGRGQEWRPA-PGPAPGQGAEASAQGRAE 234
E P +P +DG G PGP G G++ PGPA GA A G
Sbjct: 702 GEKGPEG----APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGAR-GAPGERG 756
Query: 235 EEGLPAKA------HADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP 288
E G P A ADG+P G + + G+ A S QGP P
Sbjct: 757 ETGPPGPAGFAGPPGADGQP--GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGP 814
Query: 289 --ADGMKGPP 296
A G +GPP
Sbjct: 815 KGARGAQGPP 824
Score = 36.6 bits (83), Expect = 0.10
Identities = 35/134 (26%), Positives = 42/134 (31%), Gaps = 1/134 (0%)
Query: 120 QCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDT 179
Q D G G +G G G D+ + G P RG + L L
Sbjct: 1016 QGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1075
Query: 180 DPLSEPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGL 238
S + A G PGP GP G G P P PG + G A G
Sbjct: 1076 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN 1135
Query: 239 PAKAHADGEPKSGV 252
P G P G+
Sbjct: 1136 PGPPGPPGPPGPGI 1149
Score = 35.0 bits (79), Expect = 0.29
Identities = 54/199 (27%), Positives = 62/199 (31%), Gaps = 30/199 (15%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
GA G+ GG G G A G+ E GP A + E P
Sbjct: 708 GAPGKDGGRGLTGPIGPPGPAG-ANGEKGEVGPPGPA-GSAGARGAPGERGETGPPGPAG 765
Query: 184 EPDPPARD-----------AASPHQDGAPGP-GPRGGRGQEW----------RPAPGPAP 221
PP D A GAPGP GP G G + R A GP P
Sbjct: 766 FAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGP-P 824
Query: 222 GQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQG 281
G A GR G G P + KG P RA +Q P
Sbjct: 825 GATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGE-PGLQGPAGP 883
Query: 282 PLVQEAPAD----GMKGPP 296
P + P D G +GPP
Sbjct: 884 PGEKGEPGDDGPSGAEGPP 902
Score = 33.1 bits (74), Expect = 1.1
Identities = 43/163 (26%), Positives = 53/163 (32%), Gaps = 37/163 (22%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAE------ETRDSDLSEL 176
AGA G G G P A A G A G P +GA +T + ++
Sbjct: 335 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGF 394
Query: 177 S-DTDPLSEPDP--------PARDAASPHQDGAPG-------------PGPRGGRGQEWR 214
+ P EP P PA + G PG PG RG GQ+
Sbjct: 395 KGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 454
Query: 215 PAPGPAPGQGAEASAQG---------RAEEEGLPAKAHADGEP 248
P APG+ + G R E GLP G P
Sbjct: 455 AGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP 497
Score = 32.3 bits (72), Expect = 1.9
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 181 PLSEPDPPAR-----DAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAE 234
P P PP + +A P + G GP GP+G RG P G G
Sbjct: 172 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG 231
Query: 235 EEGLPAKAHADGEP 248
E G P G P
Sbjct: 232 EAGAPGVKGESGSP 245
Score = 30.4 bits (67), Expect = 7.2
Identities = 34/134 (25%), Positives = 40/134 (29%), Gaps = 20/134 (14%)
Query: 130 GGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLSEPDPP- 188
G G P A G D+ + G P RG RD + + P P PP
Sbjct: 48 GPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRG-----RDGEPGTPGNPGPPGPPGPPG 102
Query: 189 --------ARDAASPHQDGAPGP------GPRGGRGQEWRPAPGPAPGQGAEASAQGRAE 234
A A + A G GP G G P P APG G
Sbjct: 103 PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 162
Query: 235 EEGLPAKAHADGEP 248
E G+ G P
Sbjct: 163 EPGVSGPMGPRGPP 176
Score = 30.4 bits (67), Expect = 7.2
Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 14/115 (12%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G +G AG P E + G TG GP + ++ P
Sbjct: 1044 GPRGDKGEAGEPGERGLKGHRGF-TGLQGLPGPPGP----SGDQGASGPAGPSGPRGPPG 1098
Query: 184 EPDPPARDAAS--PHQDGAPGP-------GPRGGRGQEWRPAPGPAPGQGAEASA 229
P +D A+ P G PGP GP G G P P PG G + SA
Sbjct: 1099 PVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSA 1153
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.1 bits (113), Expect = 3e-05
Identities = 42/128 (32%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+ GA G +G G P E +G + G P L GAA R +D + SD
Sbjct: 277 ETGAPGLKGENGLPGENGAPGPMGPRGAPGER---GRPGLPGAAG-ARGNDGARGSD--- 329
Query: 182 LSEPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPA 240
+P PP P G PG PG +G G P APGQ E QG A +G P
Sbjct: 330 -GQPGPPG----PPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPG 384
Query: 241 KAHADGEP 248
+G P
Sbjct: 385 PPGINGSP 392
Score = 47.4 bits (111), Expect = 6e-05
Identities = 60/203 (29%), Positives = 66/203 (32%), Gaps = 26/203 (12%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPL 182
AGA G RGGAG P G+A G P L+G E L
Sbjct: 689 AGAPGLRGGAGPP---GPEGGKGAAGPPGPPGAAGTPGLQGMPGER--GGLGSPGPKGDK 743
Query: 183 SEPDPPARDAASPHQDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEA---SAQGRAEE 235
EP P D P +DG GP GP G GQ G APG A + G E
Sbjct: 744 GEPGGPGADGV-PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGE 802
Query: 236 EGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP--ADGMK 293
G P A G P G G G P + GP P G
Sbjct: 803 TGPPGPAGFPGAP--GQNGEPGGKGERGAPGEKGE---------GGPPGVAGPPGGSGPA 851
Query: 294 GPPSGRATKTLESRPLGETLRGF 316
GPP + K P G GF
Sbjct: 852 GPPGPQGVKGERGSPGGPGAAGF 874
Score = 45.4 bits (106), Expect = 2e-04
Identities = 53/181 (29%), Positives = 66/181 (36%), Gaps = 21/181 (11%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
GA G G G P E LGS D+ + GGP G + T P+
Sbjct: 717 GAAGTPGLQGMPGERG---GLGSPGPKGDKGEPGGPGADGVPGKD-----GPRGPTGPIG 768
Query: 184 EPDPPARDAASPHQDGAPG----PGPRGG---RGQEWRPAPGPAPGQGAEASAQGRAEEE 236
P P A + GAPG GPRG RG+ P P PG + G E
Sbjct: 769 PPGP-AGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGER 827
Query: 237 GLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP-ADGMKGP 295
G P + G P GV G G P + ++ + GP P A G+ GP
Sbjct: 828 GAPGEKGEGGPP--GVAGPPGGSGPAGPPGPQG--VKGERGSPGGPGAAGFPGARGLPGP 883
Query: 296 P 296
P
Sbjct: 884 P 884
Score = 42.4 bits (98), Expect = 0.002
Identities = 39/140 (27%), Positives = 50/140 (35%), Gaps = 12/140 (8%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G GG +G G P + G+ + G P +G A D
Sbjct: 624 GPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAP--GGKGDAGAPG 681
Query: 184 EPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPA---------PGQGAEASAQGRAE 234
E PP A + GA PGP GG+G P P A PG+ + G
Sbjct: 682 ERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKG 741
Query: 235 EEGLPAKAHADGEP-KSGVR 253
++G P ADG P K G R
Sbjct: 742 DKGEPGGPGADGVPGKDGPR 761
Score = 40.8 bits (94), Expect = 0.005
Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 30/190 (15%)
Query: 192 AASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEP-- 248
A P ++GA G PGPRG RG+ P A G+ + + G GLP A G P
Sbjct: 431 AGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGF 490
Query: 249 -----KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQ-----GPLVQEAP-------ADG 291
+G+ + G P A + +P + GP ++ P +DG
Sbjct: 491 RGPAGPNGIPGEKGPAGERGAP-GPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDG 549
Query: 292 MKGPP-----SGRATKTLESRPLGET-LRGFCTSEDSDINITSGEEDHKEQP-FPGVCNP 344
GPP SGR S P G+ + GF + +D G+ + P PG P
Sbjct: 550 KPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGND--GAPGKNGERGGPGGPGPQGP 607
Query: 345 KEKNSGRVPR 354
KN P+
Sbjct: 608 PGKNGETGPQ 617
Score = 39.3 bits (90), Expect = 0.016
Identities = 48/190 (25%), Positives = 57/190 (30%), Gaps = 19/190 (10%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPL 182
AG G G G P + GS G D + G P GA
Sbjct: 1004 AGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPG---------- 1053
Query: 183 SEPDPPARDAASPHQDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGL 238
P PA + + G GP GP G RG P G+ E A G G
Sbjct: 1054 --PVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGF 1111
Query: 239 PAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMKGPPSG 298
P A G P G ++ +G R V S G P G GP
Sbjct: 1112 PGNPGAPGSP--GPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPI-GPPGPRGN 1168
Query: 299 RATKTLESRP 308
R + E P
Sbjct: 1169 RGERGSEGSP 1178
Score = 36.6 bits (83), Expect = 0.10
Identities = 46/177 (25%), Positives = 59/177 (33%), Gaps = 7/177 (3%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G RG G E G + GG RGA E + ++ S
Sbjct: 789 GIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGS 848
Query: 184 EPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKA 242
P P + G+PG PG G G P P + G G ++G P A
Sbjct: 849 GPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908
Query: 243 HADGEPKS-GVRRRRKGVGRHWVPEARASVLRSIQDPWQGPL--VQEAPADGMKGPP 296
G P S GV + G+ P + S GPL A G+ GPP
Sbjct: 909 GNTGAPGSPGVSGPKGDAGQ---PGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPP 962
Score = 36.6 bits (83), Expect = 0.10
Identities = 39/136 (28%), Positives = 46/136 (33%), Gaps = 11/136 (8%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRG-AAEETRDSDLSELSDTDPL 182
GA G +G G E A G + G P G A ++ P+
Sbjct: 1083 GAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPV 1142
Query: 183 SEPDPPARDAASPHQDGAPGPGPRGGRGQ---EWRPA----PGPAPGQGAEASAQGRAEE 235
PP +D S H PGPRG RG+ E P PGP GA G
Sbjct: 1143 GPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGV-- 1200
Query: 236 EGLPAKAHADGEPKSG 251
G A A GE G
Sbjct: 1201 -GAAAIAGIGGEKAGG 1215
Score = 35.8 bits (81), Expect = 0.17
Identities = 57/214 (26%), Positives = 70/214 (32%), Gaps = 33/214 (15%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLS-ELSDTDPL 182
GA G G G P + GS G + G P +G + S +
Sbjct: 519 GAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVM 578
Query: 183 SEPDPPARDAA---SPHQDGAPGPGPRG--GRGQEWRP--APGPA--------------- 220
P P D A + + G GPGP+G G+ E P PGP
Sbjct: 579 GFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQ 638
Query: 221 -----PGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPE-ARASVLRS 274
PG G G+ E G A A G P G + G P A A LR
Sbjct: 639 GLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAP--GGKGDAGAPGERGPPGLAGAPGLRG 696
Query: 275 IQDPWQGPLVQEAPADGMKGPPSGRATKTLESRP 308
P GP + A G GPP T L+ P
Sbjct: 697 GAGP-PGPEGGKGAA-GPPGPPGAAGTPGLQGMP 728
Score = 35.8 bits (81), Expect = 0.17
Identities = 40/136 (29%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSA--TGDDDEDDGGGPRLRGAAEETRDSDLSELSDT 179
D G G G GAP +G A +GD E GP +R +
Sbjct: 1033 DRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA-------- 1084
Query: 180 DPLSEPDPPARDAASPHQDGAPG-PGPRGGRGQEWRP-APGPAPGQGA-----EASAQGR 232
P P D + GA G G RG G P +PGPA QGA A +G
Sbjct: 1085 ---PGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGP 1141
Query: 233 AEEEGLPAKAHADGEP 248
G P K G P
Sbjct: 1142 VGPSGPPGKDGTSGHP 1157
Score = 35.4 bits (80), Expect = 0.22
Identities = 37/132 (28%), Positives = 46/132 (34%), Gaps = 9/132 (6%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPL 182
AG G G AG P V GS G G L G + S +
Sbjct: 842 AGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGK 901
Query: 183 SEPDPPARDAASPHQDGAPGP-------GPRGGRGQEWRP-APGPAPGQGAEASAQGRAE 234
P PA + +P G GP G +G G + P APGP G A+G A
Sbjct: 902 DGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPL-GIAGITGARGLAG 960
Query: 235 EEGLPAKAHADG 246
G+P + G
Sbjct: 961 PPGMPGPRGSPG 972
Score = 35.0 bits (79), Expect = 0.29
Identities = 57/221 (25%), Positives = 74/221 (33%), Gaps = 41/221 (18%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G RG G P A G + G P G+ +D +T
Sbjct: 858 GVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPG--KDGPPGPAGNTGAPG 915
Query: 184 EP--DPPARDAASPHQDGAPG-------PGP---------RGGRGQEWRPAPGPAPG-QG 224
P P DA P + G+PG PGP RG G P P +PG QG
Sbjct: 916 SPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQG 975
Query: 225 AEASA-----------QGRAEEEGLPAKAHADGEPKSGVRRRRKGV-GRHWVPEARASVL 272
+ + +G +GLP A GEP G+ GR P +
Sbjct: 976 VKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGD-- 1033
Query: 273 RSIQDPWQGPLVQEAPA-DGMKGP--PSGRATKTLESRPLG 310
+ P AP G GP P+G++ ES P G
Sbjct: 1034 ---RGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAG 1071
Score = 34.7 bits (78), Expect = 0.38
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 181 PLSEPDPPARDAASPH--QDGAPG----PGPRGGRGQEWRPAP-------GPAPGQGAEA 227
P P PP S H G+PG PG G G P P GPA G+ E+
Sbjct: 175 PAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPA-GKDGES 233
Query: 228 SAQGRAEEEGLP 239
GR E GLP
Sbjct: 234 GRPGRPGERGLP 245
Score = 33.1 bits (74), Expect = 1.1
Identities = 33/121 (27%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEET----RDSDLSELSDT 179
G G +G AG A G+A + GGP +RG D
Sbjct: 498 GIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQ 557
Query: 180 DPLSEPDPPARDA--ASPHQDGAPGP-------GPRGGRGQEWRPAPGPAPGQGAEASAQ 230
P PP P G PGP G G RG P P PG+ E Q
Sbjct: 558 GESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQ 617
Query: 231 G 231
G
Sbjct: 618 G 618
Score = 32.3 bits (72), Expect = 1.9
Identities = 50/191 (26%), Positives = 63/191 (32%), Gaps = 43/191 (22%)
Query: 119 HQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSD 178
+Q G G+ G +G P G A D + G P RG
Sbjct: 199 YQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGL-------------- 244
Query: 179 TDPLSEPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEG 237
P PP + G PG PG +G RG + R G+ E A G E G
Sbjct: 245 ------PGPPGIKGPA----GIPGFPGMKGHRGFDGRN------GEKGETGAPGLKGENG 288
Query: 238 LPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMKGPPS 297
LP + A G G R GR +P A + D +G +DG GPP
Sbjct: 289 LPGENGAPG--PMGPRGAPGERGRPGLPGAAGA---RGNDGARG-------SDGQPGPPG 336
Query: 298 GRATKTLESRP 308
T P
Sbjct: 337 PPGTAGFPGSP 347
Score = 32.3 bits (72), Expect = 1.9
Identities = 50/201 (24%), Positives = 65/201 (32%), Gaps = 22/201 (10%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+ G G G GAP + G A + G P + G+ + P
Sbjct: 352 EVGPAGSPGSNGAPGQRGEPGPQGHAGA---QGPPGPPGINGSP--------GGKGEMGP 400
Query: 182 LSEPDPPARDAAS--PHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGL 238
P P A P GA G PG RGG G+ P A G+ +G A G+
Sbjct: 401 AGIPGAPGLMGARGPPGPAGANGAPGLRGGAGE---PGKNGAKGEPGPRGERGEAGIPGV 457
Query: 239 PAKAHADGEPKS----GVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMKG 294
P DG+ S G G P R + +GP E A G G
Sbjct: 458 PGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGP-AGERGAPGPAG 516
Query: 295 PPSGRATKTLESRPLGETLRG 315
P + P G +RG
Sbjct: 517 PRGAAGEPGRDGVPGGPGMRG 537
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 47.4 bits (111), Expect = 6e-05
Identities = 38/123 (30%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 165 AEETRDSDLSELSDTDPLSE----PDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPA 220
++ +RD + E TDP S P+P + + G GP P G G PG
Sbjct: 176 SDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGE 235
Query: 221 PGQ-GAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPW 279
PG+ GA A+A A A A A G +G G G+ W P + SI D
Sbjct: 236 PGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAG------GPGQGWAP--GPGPITSIPDSL 287
Query: 280 QGP 282
GP
Sbjct: 288 GGP 290
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 47.0 bits (110), Expect = 7e-05
Identities = 62/208 (29%), Positives = 75/208 (36%), Gaps = 28/208 (13%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAA----------EETRDSDL 173
G G RG AG P A + GD E GP GAA E+ +
Sbjct: 1202 GEKGERGDAGDPGPPG-APGIPGPKGDIGEKGDSGPS--GAAGPPGKKGPPGEDGAKGSV 1258
Query: 174 SELSDTDPLSEPDPPARDA--ASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEA 227
L P P SP + G PG PGP G G+ P P G
Sbjct: 1259 GPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHM 1318
Query: 228 SAQGRAEEEGLPAKAHADGEP-KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQE 286
+GR E+G + DG P ++G R GR PE LR I P P +
Sbjct: 1319 GREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVG-PEG----LRGIPGPVGEPGLLG 1373
Query: 287 APAD-GMKGP--PSGRATKTLESRPLGE 311
AP G GP PSG ++ P GE
Sbjct: 1374 APGQMGPPGPLGPSGLPGLKGDTGPKGE 1401
Score = 40.4 bits (93), Expect = 0.007
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 167 ETRDSDLSELSDTDPLSEPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGA 225
E R+ EL PL + + PA P G PG PGP G +G + P P A G
Sbjct: 952 EGREGAKGELGPPGPLGK-EGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPG 1010
Query: 226 EASAQGRAEEEGLPAKAHADG 246
E G A GLP ++ ++G
Sbjct: 1011 ERGPLGPAGGIGLPGQSGSEG 1031
Score = 38.9 bits (89), Expect = 0.020
Identities = 46/158 (29%), Positives = 53/158 (33%), Gaps = 36/158 (22%)
Query: 115 LKRPHQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLS 174
L+ PH G GR G G P G D G P L G +
Sbjct: 516 LQGPH----GPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPG--------EKG 563
Query: 175 ELSDTDPLSEPDPPARD----AASP----HQDGAPGP----GPRGGRGQEWRP------- 215
+ D + +P PP D A P Q G PGP GPRG G RP
Sbjct: 564 QRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDG 623
Query: 216 APGP-----APGQGAEASAQGRAEEEGLPAKAHADGEP 248
APG PG+ QG +GLP G P
Sbjct: 624 APGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTP 661
Score = 37.7 bits (86), Expect = 0.045
Identities = 42/137 (30%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 197 QDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRR 255
Q GA G PGP+G GQ+ P G G +G P DG P +R
Sbjct: 843 QPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRG 902
Query: 256 RKGVGRHWVPEARASVLRSIQDPWQ-GPLVQEAPADGMKGPPSGRATKTLESR------- 307
G P A VL + GPL + P G GPP + LE R
Sbjct: 903 ELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGP-PGPPGPPGEQGLPGLEGREGAKGEL 961
Query: 308 ----PLGET----LRGF 316
PLG+ LRGF
Sbjct: 962 GPPGPLGKEGPAGLRGF 978
Score = 35.8 bits (81), Expect = 0.17
Identities = 37/135 (27%), Positives = 49/135 (36%), Gaps = 10/135 (7%)
Query: 124 GAGGRRGGAGAPREWNV---AYALGSATGDDDEDDGGGPRLRGA-AEETRDSDLSELSDT 179
G+ G +G AG P + + A G D + G P L G ++ + +
Sbjct: 1088 GSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPP 1147
Query: 180 DPLSEPDPPAR-----DAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRA 233
P PP D S GAPGP GP+G G E P GQ +G
Sbjct: 1148 GLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGER 1207
Query: 234 EEEGLPAKAHADGEP 248
+ G P A G P
Sbjct: 1208 GDAGDPGPPGAPGIP 1222
Score = 34.7 bits (78), Expect = 0.38
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 197 QDGAPG-PGPRGGRGQEWRP-APGPAPGQGAEA--SAQGRAEEEGLPAKAHADGEPKSGV 252
+DG PG G G +G + +P APGP G E G+A EEG P A G K GV
Sbjct: 732 EDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKG--KLGV 789
Query: 253 RRRRKGVGRHWVPEARASV-----LRSIQDPWQGPLVQEAPADGMKGPPSGRATK 302
GR P + S+ L I + + + +G +GPP R +
Sbjct: 790 PGLPGYPGR---PGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGER 841
Score = 33.1 bits (74), Expect = 1.1
Identities = 49/178 (27%), Positives = 60/178 (33%), Gaps = 35/178 (19%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRG--AAEETRDSDLSELSDT 179
D G G +G GAP G ED GP+ + A EE E
Sbjct: 741 DVGLKGDQGKPGAP-------------GPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKL 787
Query: 180 DPLSEPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGL 238
P P R P G+ G PGP G G++ + PG E G E G
Sbjct: 788 GVPGLPGYPGR----PGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQ 843
Query: 239 PAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADGMKGPP 296
P G PK V + G +P + L +Q P P G KGPP
Sbjct: 844 PGATGQPG-PKGDVGQD----GAPGIPGEKG--LPGLQGPPGFP--------GPKGPP 886
Score = 32.0 bits (71), Expect = 2.5
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 163 GAAEETRDSDLSELSDTD-PLSEPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPA 220
G A E D L + P +P PP + H G PG GP G +G + P +
Sbjct: 1415 GEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGH-PGPPGVAGPLGQKGSKGSPG---S 1470
Query: 221 PGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGV 259
G + G G PA+ H G+RRRR+ V
Sbjct: 1471 MGPRGDTGPAGPPGPPGAPAELH-------GLRRRRRFV 1502
Score = 30.4 bits (67), Expect = 7.2
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 181 PLSEPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLP 239
P EP PP + Q G PGP G G G++ P PG G EG
Sbjct: 633 PPGEPGPPGQQGNHGSQ-GLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPT 691
Query: 240 AKAHADGEPKS 250
+ A G P S
Sbjct: 692 GEKGAQGPPGS 702
Score = 30.4 bits (67), Expect = 7.2
Identities = 34/131 (25%), Positives = 42/131 (32%), Gaps = 11/131 (8%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+ G G GG G P + +G A + G P G +D L P
Sbjct: 1011 ERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTG-----KDGIPGPLGPLGP 1065
Query: 182 LSEPDPPAR-----DAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEE 235
P D +P G+ G G G GQ P PG AQGR
Sbjct: 1066 PGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGP 1125
Query: 236 EGLPAKAHADG 246
GL + DG
Sbjct: 1126 PGLFGQKGDDG 1136
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.8 bits (107), Expect = 2e-04
Identities = 60/220 (27%), Positives = 72/220 (32%), Gaps = 39/220 (17%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
GA G RG AG P A G + G P G A ++ +T P
Sbjct: 860 GAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAG--KEGGKGPRGETGPAG 917
Query: 184 EPDP--------PARDAASPHQDG---APG----------------PGPRGGRGQEWRPA 216
P PA + SP DG APG PG RG RG P
Sbjct: 918 RPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPG 977
Query: 217 PGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGV----GRHWVPEARASVL 272
P PG+ + A G G G P R G GR P A+
Sbjct: 978 PSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGD-- 1035
Query: 273 RSIQDPWQGPLVQEAPADGMKGP--PSGRATKTLESRPLG 310
R P P AP G GP P+G++ E+ P G
Sbjct: 1036 RGETGPAGPPGAPGAP--GAPGPVGPAGKSGDRGETGPAG 1073
Score = 44.7 bits (104), Expect = 4e-04
Identities = 38/128 (29%), Positives = 45/128 (35%), Gaps = 4/128 (3%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
DAG G +G G+P E +G + G P GA D P
Sbjct: 279 DAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGA--RGNDGATGAAGPPGP 336
Query: 182 LSEPDPPARDAASPHQDGAPGPGPRGGRG-QEWRPAPGPAPGQGAEASAQGRAEEEGLPA 240
PP A + A GPRG G Q R PGP PG A G +G P
Sbjct: 337 TGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGP-PGPAGAAGPAGNPGADGQPG 395
Query: 241 KAHADGEP 248
A+G P
Sbjct: 396 AKGANGAP 403
Score = 43.9 bits (102), Expect = 6e-04
Identities = 39/133 (29%), Positives = 49/133 (36%), Gaps = 13/133 (9%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
DAGA G G GAP + G+A + D G +GA + L T P
Sbjct: 711 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGL--TGP 768
Query: 182 LSEPDPPARDAASPHQDGAPGP-------GPRGGRGQEWRPAPGPAPGQGAEASAQGRAE 234
+ P P A +P G GP G RG G P P G A G+
Sbjct: 769 IGPPGP----AGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPG 824
Query: 235 EEGLPAKAHADGE 247
+G P A A G+
Sbjct: 825 AKGEPGDAGAKGD 837
Score = 43.1 bits (100), Expect = 0.001
Identities = 71/275 (25%), Positives = 92/275 (33%), Gaps = 34/275 (12%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPL 182
AG G+RG G P + G G G + G + P
Sbjct: 463 AGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPA--GERGSPGPAGPK 520
Query: 183 SEPDPPAR--DAASPH------QDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEASAQ 230
P R +A P G+PGP GP G GQ+ RP P PG A+
Sbjct: 521 GSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPG------AR 574
Query: 231 GRAEEEGLPAKAHADGEP-KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPA 289
G+A G P A GEP K+G R G P A + + QGP PA
Sbjct: 575 GQAGVMGFPGPKGAAGEPGKAGER------GVPGPPGAVGPAGKDGEAGAQGPPGPAGPA 628
Query: 290 D--GMKGPPSGRATKTL--ESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPK 345
G +GP + L + P GE + D+ E+ FPG +
Sbjct: 629 GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ 688
Query: 346 EKNSGRVPRALQDSRAAPAEGLCCYICGAPLSPAS 380
PR + AP GAP +P S
Sbjct: 689 GPPGPAGPRG---ANGAPGNDGAKGDAGAPGAPGS 720
Score = 42.0 bits (97), Expect = 0.002
Identities = 47/163 (28%), Positives = 56/163 (34%), Gaps = 23/163 (14%)
Query: 104 ARTPVDKRMYWLKRPHQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRG 163
+ +P D+ ++ P + D G G RG AG P + G G P L G
Sbjct: 99 SESPTDQETTGVEGP-KGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGG 157
Query: 164 AAEETRDSDLSELSDTDPLSEPDP--PARDAASPHQDGAPGP----------------GP 205
E S T +S P P P+ P GAPGP GP
Sbjct: 158 NFAPQLSYGYDEKS-TGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGP 216
Query: 206 RGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEP 248
G RG P P G EA GR E G P A G P
Sbjct: 217 MGPRGP---PGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLP 256
Score = 40.0 bits (92), Expect = 0.009
Identities = 42/151 (27%), Positives = 51/151 (33%), Gaps = 15/151 (9%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+ G G RG G P A G+ D + D G P G+ +
Sbjct: 678 ERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAG 737
Query: 182 LSEPDPPARDAASPHQDGAPG-------------PGPRGGRGQEWRPAP-GPAPGQGAEA 227
L P DA DG+PG PGP G G + P GPA GA
Sbjct: 738 LPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGAR- 796
Query: 228 SAQGRAEEEGLPAKAHADGEPKSGVRRRRKG 258
A G E G P A G P + + KG
Sbjct: 797 GAPGDRGEPGPPGPAGFAGPPGADGQPGAKG 827
Score = 37.4 bits (85), Expect = 0.059
Identities = 38/141 (26%), Positives = 48/141 (34%), Gaps = 15/141 (10%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEET-------RDSDLS 174
+ G GR G G P A GS D G P +G A + + +
Sbjct: 912 ETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERG 971
Query: 175 ELSDTDPLSEPDPPARDAASPHQDGAPGP-------GPRGGRGQEWRPAPGPAPGQGAEA 227
P EP AS + G PGP GP G G+E P +PG+
Sbjct: 972 FPGLPGPSGEPGKQGPSGASGER-GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP 1030
Query: 228 SAQGRAEEEGLPAKAHADGEP 248
A+G E G A G P
Sbjct: 1031 GAKGDRGETGPAGPPGAPGAP 1051
Score = 37.0 bits (84), Expect = 0.077
Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 14/129 (10%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSA--TGDDDEDDGGGPRLRGAAEETRDSDLSELSDT 179
D G G G GAP +G A +GD E GP + +
Sbjct: 1035 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPA----------GPVGPVGAR 1084
Query: 180 DPLSEPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGL 238
P P P D + G G G RG G + P P +PG+ + A G A G
Sbjct: 1085 GPAG-PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP 1143
Query: 239 PAKAHADGE 247
P A A G+
Sbjct: 1144 PGSAGAPGK 1152
Score = 35.0 bits (79), Expect = 0.29
Identities = 34/126 (26%), Positives = 43/126 (34%), Gaps = 4/126 (3%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G+ G +G G P A A G A G+ D G P +GA + S
Sbjct: 362 GSEGPQGVRGEPGPPGPAGAAGPA-GNPGAD--GQPGAKGANGAPGIAGAPGFPGARGPS 418
Query: 184 EPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKA 242
P P G PG PG +G G + P P G A +G+ G P
Sbjct: 419 GPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPT 478
Query: 243 HADGEP 248
G P
Sbjct: 479 GLPGPP 484
Score = 33.9 bits (76), Expect = 0.65
Identities = 40/142 (28%), Positives = 44/142 (30%), Gaps = 30/142 (21%)
Query: 124 GAGGRRGGAGAPREWNVAYALG--SATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
G G G AG P A G A G E GPR + R
Sbjct: 323 GNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVR------------ 370
Query: 182 LSEPDPPA-----RDAASPHQDGAPG-------PGPRGGRGQEWRPAPGPAPGQGAEASA 229
EP PP A +P DG PG PG G G P G G
Sbjct: 371 -GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP 429
Query: 230 QGRAEEEGLPAK---AHADGEP 248
+G + E G P A GEP
Sbjct: 430 KGNSGEPGAPGSKGDTGAKGEP 451
Score = 33.9 bits (76), Expect = 0.65
Identities = 52/203 (25%), Positives = 70/203 (34%), Gaps = 27/203 (13%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPL 182
AG G G AG P A G A G +RG + + + +P
Sbjct: 331 AGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAG-NPG 389
Query: 183 SEPDPPARDA-ASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEG 237
++ P A+ A +P GAPG GP G +G P P G+ ++G +G
Sbjct: 390 ADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKG 449
Query: 238 LPAKAHADGEP-------KSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAP-A 289
P G P K G R G P R GP + P A
Sbjct: 450 EPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERG-----------GPGSRGFPGA 498
Query: 290 DGMKGP--PSGRATKTLESRPLG 310
DG+ GP P+G + P G
Sbjct: 499 DGVAGPKGPAGERGSPGPAGPKG 521
Score = 31.2 bits (69), Expect = 4.2
Identities = 48/192 (25%), Positives = 59/192 (30%), Gaps = 31/192 (16%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
GA G +G G P E G+ GPR ++ D E
Sbjct: 194 GAPGPQGFQGPPGE----------PGEPGASGPMGPR-GPPGPPGKNGDDGEAGKPGRPG 242
Query: 184 EPDPPARDAAS--PHQDGAPG-------PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAE 234
E PP A P G PG G G +G P PG E A G+
Sbjct: 243 ERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG 302
Query: 235 EEGLPAKAHADGEPKSGVRRRRKG----------VGRHWVPEARASVLRSIQDPWQGPLV 284
GLP + G P R G G P +V + QGP
Sbjct: 303 PRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRG 362
Query: 285 QEAPADGMKGPP 296
E P G++G P
Sbjct: 363 SEGP-QGVRGEP 373
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 45.8 bits (107), Expect = 2e-04
Identities = 78/289 (26%), Positives = 96/289 (33%), Gaps = 46/289 (15%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGG------PRLRGAAEETRDSDLSELS 177
G G RG GA E A+G A D + G P +RG + D L+
Sbjct: 722 GEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLT 781
Query: 178 DTD-PLSEPDPPARDAASPHQDGAPG-------------PGPRGGRGQEWRPAPGPAPGQ 223
P P P R + GAPG PGP G G P P APG
Sbjct: 782 GPQGPQGLPGTPGRPGIKG-EPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGP 840
Query: 224 GAEASAQGRAEE---EGLPAKAHADGEPKSGV-----RRRRKGVGRHWVPEARASVLRSI 275
A G E +G P G P + R G G P S L +
Sbjct: 841 AGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNS 900
Query: 276 QDPWQGPLVQEAP--ADGMKGPPSGRATKTLESRPLGETLRGFCTSEDSDINITSGEEDH 333
+ GP P G +GPP R + + P GF TS S +
Sbjct: 901 ETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLP------GFSTSGSSSFGLNLQGPPG 954
Query: 334 KEQPFPGVCNPK-EKNSGRVPRALQDSRAAPAEG---LCCYICGAPLSP 378
PG PK +K VP AL + P+EG Y+ G P P
Sbjct: 955 P----PGPQGPKGDKGDPGVPGAL-GIPSGPSEGGSSSTMYVSGPPGPP 998
Score = 31.2 bits (69), Expect = 4.2
Identities = 54/228 (23%), Positives = 72/228 (31%), Gaps = 46/228 (20%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALG-----------SATGDDDEDDGGGPRLR----GAAE 166
D G+ G +G G P + LG + GD + G R R G
Sbjct: 574 DMGSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRG 633
Query: 167 ETRDSDLSELSDTDPLSEPDP-----------PARDAASPHQDGAPGP------------ 203
E E + EP P P + SP G PGP
Sbjct: 634 EAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGL 693
Query: 204 -GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRH 262
G +G +G PGP QG E +G E G+ A GEP + G H
Sbjct: 694 PGVKGDKGP--MGPPGPKGDQG-EKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGH 750
Query: 263 WVPEARASV--LRSIQDPWQGPLVQEAPADGMKGPPSGRATKTLESRP 308
P + + I+ P GP + G+ GP + RP
Sbjct: 751 QGPRGEQGLTGMPGIRGP-PGP-SGDPGKPGLTGPQGPQGLPGTPGRP 796
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 45.1 bits (105), Expect = 3e-04
Identities = 38/132 (28%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGA----AEETRDSDLSELSDT 179
G+ G +G G P G + D G P RG E + + D
Sbjct: 436 GSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDA 495
Query: 180 DPLSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAP-GPAPGQG--AEASAQGRAEEE 236
P + P P + G PGPRG G++ P P GP G+G GR E+
Sbjct: 496 GPRGDSGQPG-PKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEK 554
Query: 237 GLPAKAHADGEP 248
G PA GEP
Sbjct: 555 GEPADPGPPGEP 566
Score = 34.3 bits (77), Expect = 0.50
Identities = 37/136 (27%), Positives = 47/136 (34%), Gaps = 30/136 (22%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+ G G +G G P ALG D G RG + P
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRG-----------DSGQPGP 506
Query: 182 LSEPDPPARD----AASPHQDGAPGP-GPRGGRG------------QEWRPA-PGPAPGQ 223
+P P +P + G PGP GP GGRG ++ PA PGP PG+
Sbjct: 507 KGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGP-PGE 565
Query: 224 GAEASAQGRAEEEGLP 239
+G EG P
Sbjct: 566 PGPRGPRGVPGPEGEP 581
Score = 33.9 bits (76), Expect = 0.65
Identities = 31/102 (30%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
D+G G +G G P ++ G E GPR E D +
Sbjct: 500 DSGQPGPKGDPGRP-----GFSYPGPRGAPGEKGEPGPR----GPEGGRGDFGLKGEPGR 550
Query: 182 LSEPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPG 222
E PA P G PGP GPRG G E P P PG
Sbjct: 551 KGEKGEPA----DPGPPGEPGPRGPRGVPGPEGEPGPPGDPG 588
Score = 33.5 bits (75), Expect = 0.85
Identities = 49/205 (23%), Positives = 68/205 (33%), Gaps = 33/205 (16%)
Query: 116 KRPHQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSE 175
+R Q G GR G G P E A GS + G P ++GA
Sbjct: 365 ERGDQGGKGDPGRPGRRGPPGEIG---AKGSKGYQGNSGAPGSPGVKGAK---------- 411
Query: 176 LSDTDPLSEPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQG 231
P P P + G PG PG G +G++ P P G E +G
Sbjct: 412 -------GGPGPRG-PKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKG 463
Query: 232 RAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDP----WQGPLVQEA 287
+ GLP G ++ +G P + DP + P + A
Sbjct: 464 AKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGA 523
Query: 288 PAD----GMKGPPSGRATKTLESRP 308
P + G +GP GR L+ P
Sbjct: 524 PGEKGEPGPRGPEGGRGDFGLKGEP 548
Score = 32.3 bits (72), Expect = 1.9
Identities = 42/153 (27%), Positives = 52/153 (33%), Gaps = 10/153 (6%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G G G P V G + G P L G + D +L P
Sbjct: 286 GDPGIEGPIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAG--KNGTDGQKGKLGRIGPPG 343
Query: 184 EPDPPARDAASPHQDGAPGPGPR---GGRGQEWRPAPGPAPGQ-GAEASA--QGRAEEEG 237
P + A PG R GG+G RP PG+ GA+ S QG + G
Sbjct: 344 CKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPG 403
Query: 238 LPAKAHADGEPKSGVRRRRKGVGRHWVPEARAS 270
P A G P G R + GR P + S
Sbjct: 404 SPGVKGAKGGP--GPRGPKGEPGRRGDPGTKGS 434
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 45.1 bits (105), Expect = 3e-04
Identities = 38/132 (28%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGA----AEETRDSDLSELSDT 179
G+ G +G G P G + D G P RG E + + D
Sbjct: 436 GSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDA 495
Query: 180 DPLSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAP-GPAPGQG--AEASAQGRAEEE 236
P + P P + G PGPRG G++ P P GP G+G GR E+
Sbjct: 496 GPRGDSGQPG-PKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEK 554
Query: 237 GLPAKAHADGEP 248
G PA GEP
Sbjct: 555 GEPADPGPPGEP 566
Score = 34.3 bits (77), Expect = 0.50
Identities = 37/136 (27%), Positives = 47/136 (34%), Gaps = 30/136 (22%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+ G G +G G P ALG D G RG + P
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRG-----------DSGQPGP 506
Query: 182 LSEPDPPARD----AASPHQDGAPGP-GPRGGRG------------QEWRPA-PGPAPGQ 223
+P P +P + G PGP GP GGRG ++ PA PGP PG+
Sbjct: 507 KGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGP-PGE 565
Query: 224 GAEASAQGRAEEEGLP 239
+G EG P
Sbjct: 566 PGPRGPRGVPGPEGEP 581
Score = 33.9 bits (76), Expect = 0.65
Identities = 31/102 (30%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
D+G G +G G P ++ G E GPR E D +
Sbjct: 500 DSGQPGPKGDPGRP-----GFSYPGPRGAPGEKGEPGPR----GPEGGRGDFGLKGEPGR 550
Query: 182 LSEPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPG 222
E PA P G PGP GPRG G E P P PG
Sbjct: 551 KGEKGEPA----DPGPPGEPGPRGPRGVPGPEGEPGPPGDPG 588
Score = 33.5 bits (75), Expect = 0.85
Identities = 49/205 (23%), Positives = 68/205 (33%), Gaps = 33/205 (16%)
Query: 116 KRPHQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSE 175
+R Q G GR G G P E A GS + G P ++GA
Sbjct: 365 ERGDQGGKGDPGRPGRRGPPGEIG---AKGSKGYQGNSGAPGSPGVKGAK---------- 411
Query: 176 LSDTDPLSEPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQG 231
P P P + G PG PG G +G++ P P G E +G
Sbjct: 412 -------GGPGPRG-PKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKG 463
Query: 232 RAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDP----WQGPLVQEA 287
+ GLP G ++ +G P + DP + P + A
Sbjct: 464 AKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGA 523
Query: 288 PAD----GMKGPPSGRATKTLESRP 308
P + G +GP GR L+ P
Sbjct: 524 PGEKGEPGPRGPEGGRGDFGLKGEP 548
Score = 32.3 bits (72), Expect = 1.9
Identities = 42/153 (27%), Positives = 52/153 (33%), Gaps = 10/153 (6%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G G G P V G + G P L G + D +L P
Sbjct: 286 GDPGIEGPIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAG--KNGTDGQKGKLGRIGPPG 343
Query: 184 EPDPPARDAASPHQDGAPGPGPR---GGRGQEWRPAPGPAPGQ-GAEASA--QGRAEEEG 237
P + A PG R GG+G RP PG+ GA+ S QG + G
Sbjct: 344 CKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPG 403
Query: 238 LPAKAHADGEPKSGVRRRRKGVGRHWVPEARAS 270
P A G P G R + GR P + S
Sbjct: 404 SPGVKGAKGGP--GPRGPKGEPGRRGDPGTKGS 434
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 45.1 bits (105), Expect = 3e-04
Identities = 38/132 (28%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGA----AEETRDSDLSELSDT 179
G+ G +G G P G + D G P RG E + + D
Sbjct: 436 GSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDA 495
Query: 180 DPLSEPDPPARDAASPHQDGAPGPGPRGGRGQEWRPAP-GPAPGQG--AEASAQGRAEEE 236
P + P P + G PGPRG G++ P P GP G+G GR E+
Sbjct: 496 GPRGDSGQPG-PKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEK 554
Query: 237 GLPAKAHADGEP 248
G PA GEP
Sbjct: 555 GEPADPGPPGEP 566
Score = 34.3 bits (77), Expect = 0.50
Identities = 37/136 (27%), Positives = 47/136 (34%), Gaps = 30/136 (22%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+ G G +G G P ALG D G RG + P
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRG-----------DSGQPGP 506
Query: 182 LSEPDPPARD----AASPHQDGAPGP-GPRGGRG------------QEWRPA-PGPAPGQ 223
+P P +P + G PGP GP GGRG ++ PA PGP PG+
Sbjct: 507 KGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGP-PGE 565
Query: 224 GAEASAQGRAEEEGLP 239
+G EG P
Sbjct: 566 PGPRGPRGVPGPEGEP 581
Score = 33.9 bits (76), Expect = 0.65
Identities = 31/102 (30%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
D+G G +G G P ++ G E GPR E D +
Sbjct: 500 DSGQPGPKGDPGRP-----GFSYPGPRGAPGEKGEPGPR----GPEGGRGDFGLKGEPGR 550
Query: 182 LSEPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPG 222
E PA P G PGP GPRG G E P P PG
Sbjct: 551 KGEKGEPA----DPGPPGEPGPRGPRGVPGPEGEPGPPGDPG 588
Score = 33.5 bits (75), Expect = 0.85
Identities = 49/205 (23%), Positives = 68/205 (33%), Gaps = 33/205 (16%)
Query: 116 KRPHQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSE 175
+R Q G GR G G P E A GS + G P ++GA
Sbjct: 365 ERGDQGGKGDPGRPGRRGPPGEIG---AKGSKGYQGNSGAPGSPGVKGAK---------- 411
Query: 176 LSDTDPLSEPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQG 231
P P P + G PG PG G +G++ P P G E +G
Sbjct: 412 -------GGPGPRG-PKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKG 463
Query: 232 RAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDP----WQGPLVQEA 287
+ GLP G ++ +G P + DP + P + A
Sbjct: 464 AKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGA 523
Query: 288 PAD----GMKGPPSGRATKTLESRP 308
P + G +GP GR L+ P
Sbjct: 524 PGEKGEPGPRGPEGGRGDFGLKGEP 548
Score = 32.3 bits (72), Expect = 1.9
Identities = 42/153 (27%), Positives = 52/153 (33%), Gaps = 10/153 (6%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G G G P V G + G P L G + D +L P
Sbjct: 286 GDPGIEGPIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAG--KNGTDGQKGKLGRIGPPG 343
Query: 184 EPDPPARDAASPHQDGAPGPGPR---GGRGQEWRPAPGPAPGQ-GAEASA--QGRAEEEG 237
P + A PG R GG+G RP PG+ GA+ S QG + G
Sbjct: 344 CKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPG 403
Query: 238 LPAKAHADGEPKSGVRRRRKGVGRHWVPEARAS 270
P A G P G R + GR P + S
Sbjct: 404 SPGVKGAKGGP--GPRGPKGEPGRRGDPGTKGS 434
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 44.7 bits (104), Expect = 4e-04
Identities = 42/147 (28%), Positives = 52/147 (35%), Gaps = 32/147 (21%)
Query: 185 PDPPARDAASPHQDGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHA 244
P PP +P Q P P P PAP P PG A Q E LP +A
Sbjct: 20 PGPPPPPPPAPPQQQPPPPPP---------PAPPPGPGP---APPQHPPRAEALPPEAAD 67
Query: 245 DGEPKSGVRRRRKGVGRHWVPEARASVLRSIQ------DPWQGPLVQEAPADGMK----- 293
+G P+ +R R GR P A ++ S +P P E PA G K
Sbjct: 68 EGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSFSC 127
Query: 294 ---------GPPSGRATKTLESRPLGE 311
GP + E+ P GE
Sbjct: 128 RGAASGPAPGPGPAEEAGSEEAGPAGE 154
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 44.7 bits (104), Expect = 4e-04
Identities = 46/163 (28%), Positives = 56/163 (34%), Gaps = 39/163 (23%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+ G G G AG P GDD GP + D P
Sbjct: 1310 EKGESGPSGAAGPPGP-------KGPPGDDGPKGSPGP-------------VGFPGDPGP 1349
Query: 182 LSEPDPPARDA--------ASPHQDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEASA 229
EP P +D P Q G+PGP GP G G+ P P G+ E A
Sbjct: 1350 PGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGA 1409
Query: 230 QGRAEEEGLPAKA------HADGEP-KSGVRRRRKGVGRHWVP 265
+G A EG P K A G+P G+R VG +P
Sbjct: 1410 KGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLP 1452
Score = 39.7 bits (91), Expect = 0.012
Identities = 52/185 (28%), Positives = 61/185 (32%), Gaps = 16/185 (8%)
Query: 119 HQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSD 178
H G G +G G P V G + G P G E L+
Sbjct: 977 HPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEG 1036
Query: 179 T--DP----LSEPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQG 231
T DP L D P P G PGP G G +G E P P G E G
Sbjct: 1037 TKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAG 1096
Query: 232 RAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADG 291
A G+P + G P KG P+ A +D QGP+ PA G
Sbjct: 1097 AAGPIGIPGRPGPQGPPGPA---GEKGAPGEKGPQGPAG-----RDGLQGPVGLPGPA-G 1147
Query: 292 MKGPP 296
GPP
Sbjct: 1148 PVGPP 1152
Score = 36.6 bits (83), Expect = 0.10
Identities = 38/149 (25%), Positives = 51/149 (34%), Gaps = 27/149 (18%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGA----AEETRDSDLSELSD 178
+GA G G G P + + G D G P G ++ D + +
Sbjct: 1317 SGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGS 1376
Query: 179 TDPLSEPDPPARDAASPHQDGAPGP-------GPRGGRGQEWRPAP----GPAPGQGAEA 227
P EP P + P + G PGP G +G +G+ P GP QGA
Sbjct: 1377 PGPTGEPGP----SGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPG 1432
Query: 228 SA--------QGRAEEEGLPAKAHADGEP 248
G E+GLP DG P
Sbjct: 1433 KPGPDGLRGIPGPVGEQGLPGSPGPDGPP 1461
Score = 35.8 bits (81), Expect = 0.17
Identities = 45/142 (31%), Positives = 49/142 (34%), Gaps = 31/142 (21%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDE--DDGG-GPRLRGAAEETRDSDLSELSDT 179
AG G +G G P GDD E DDG GPR G E L L
Sbjct: 636 AGLPGEKGHRGDPGPSGPP----GPPGDDGERGDDGEVGPR--GLPGEPGPRGL--LGPK 687
Query: 180 DPLSEPDPPARDAASPHQDGAPGP-------------GPRGGRGQEWRPAPGPAPGQGAE 226
P P PP DG PGP G +G G + P P A G E
Sbjct: 688 GPPGPPGPPGVTG----MDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGE 743
Query: 227 ASAQGRAEEEGLPAKAHADGEP 248
G+ GLP ADG P
Sbjct: 744 KGPLGK---PGLPGMPGADGPP 762
Score = 35.8 bits (81), Expect = 0.17
Identities = 44/152 (28%), Positives = 55/152 (36%), Gaps = 25/152 (16%)
Query: 175 ELSDTDPLSEPDPPARDAAS--PHQDGAPGP----GPRGGRGQEWRPA----PGPAPGQG 224
E D + P PP S P DG GP G G G++ P PG PG+G
Sbjct: 1241 ETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPG-LPGEG 1299
Query: 225 AEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLV 284
+G E+G + A G P KG P+ + DP GP
Sbjct: 1300 GPPGPKGERGEKGESGPSGAAGPPGP------KGPPGDDGPKGSPGPVGFPGDP--GPPG 1351
Query: 285 QEAPADGMKGPP-----SGRATKTLESRPLGE 311
+ PA G GPP G +T P GE
Sbjct: 1352 EPGPA-GQDGPPGDKGDDGEPGQTGSPGPTGE 1382
Score = 35.4 bits (80), Expect = 0.22
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 181 PLSEPDPPARDAASPHQDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEE 236
P EP PP + +P G PGP GP G +G +P PG G +E
Sbjct: 713 PQGEPGPPGQQ-GNPGAQGLPGPQGAIGPPGEKGPLGKPG---LPGMPGADGPPGHPGKE 768
Query: 237 GLPAKAHADGEP 248
G P + G P
Sbjct: 769 GPPGEKGGQGPP 780
Score = 34.7 bits (78), Expect = 0.38
Identities = 51/200 (25%), Positives = 64/200 (32%), Gaps = 35/200 (17%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEET-RDSDLSELSDTDP 181
AG+ G RG AGA + G + G P +G RD + P
Sbjct: 1086 AGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGP 1145
Query: 182 LSEPDPPARDA-----ASPHQDGA---------PGP-GPRGGRGQEWRPAPGPAPGQGAE 226
PP D P Q G+ PGP GP+G GQ P P A G+
Sbjct: 1146 AGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQ---PGPSGADGEPGP 1202
Query: 227 ASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQE 286
QG ++G G P VG +P + GP
Sbjct: 1203 RGQQGLFGQKGDEGPRGFPGPPGP--------VGLQGLPGPPGEKGETGDVGQMGPPGPP 1254
Query: 287 AP--------ADGMKGPPSG 298
P ADG +GPP G
Sbjct: 1255 GPRGPSGAPGADGPQGPPGG 1274
Score = 33.5 bits (75), Expect = 0.85
Identities = 43/156 (27%), Positives = 50/156 (32%), Gaps = 32/156 (20%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G+ G +G G P +G G D GPR + + D P
Sbjct: 1168 GSKGDKGEQGPPGPTGPQGPIGQP-GPSGADGEPGPR-------GQQGLFGQKGDEGPRG 1219
Query: 184 EPDPPARDAAS-----PHQDGAPG-------PGPRGGRGQEWRP-APGPA--------PG 222
P PP P + G G PGP G RG P A GP PG
Sbjct: 1220 FPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPG 1279
Query: 223 QGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKG 258
E G A E GLP + G P R KG
Sbjct: 1280 AVGEKGEPGEAGEPGLPGEG---GPPGPKGERGEKG 1312
Score = 33.1 bits (74), Expect = 1.1
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G +G G P + +G ++ D G P +G++ + ++ + P+
Sbjct: 1474 GDSGPKGEKGHP---GLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGIT--GPSGPIG 1528
Query: 184 EPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAE 226
P PP P GA G GP G +G+ P P PG E
Sbjct: 1529 PPGPPGL-PGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGE 1571
Score = 32.7 bits (73), Expect = 1.5
Identities = 36/138 (26%), Positives = 46/138 (33%), Gaps = 23/138 (16%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G+RG G PR + G G GP E + P
Sbjct: 907 GPRGQRGPTG-PRGERGPRGITGKPGPKGNSGGDGPA-GPPGERGPNGPQGPTGFPGPKG 964
Query: 184 EPDPPARDAASPH-----------QDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEAS 228
P PP +D H + G PGP GP+G G+ GP G+
Sbjct: 965 PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGET-----GPM-GERGHPG 1018
Query: 229 AQGRAEEEGLPAKAHADG 246
G E+GLP A +G
Sbjct: 1019 PPGPPGEQGLPGLAGKEG 1036
Score = 31.2 bits (69), Expect = 4.2
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 199 GAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGE 247
G PG GP+G RG + P P PG+ A + G G+P + G+
Sbjct: 583 GEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDG---ARGMPGQTGPKGD 629
Score = 31.2 bits (69), Expect = 4.2
Identities = 38/126 (30%), Positives = 45/126 (35%), Gaps = 17/126 (13%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPR-LRGAAEETRDSDLSELSDTDPL 182
GA G +GG G P + G + GPR RG T S D
Sbjct: 892 GANGEKGGRGTPGK----------PGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGP 941
Query: 183 SEPDPPARDAASPH-QDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPA 240
+ P P R P G PGP GP G G++ P PGQ E QG+ G P
Sbjct: 942 AGP-PGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGH---PGQRGETGFQGKTGPPGPPG 997
Query: 241 KAHADG 246
G
Sbjct: 998 VVGPQG 1003
Score = 30.4 bits (67), Expect = 7.2
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 181 PLSEPDPPARDAASPHQDGAPG-------PGPRGGRGQEWRPAPGPAPGQGAEASAQGRA 233
PL +P P P DG PG PG +GG+G P PG A G
Sbjct: 746 PLGKPGLPGM----PGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIR 801
Query: 234 EEEGLPAKAHADGEP 248
+G + DG P
Sbjct: 802 GLKGTKGEKGEDGFP 816
Score = 30.4 bits (67), Expect = 7.2
Identities = 38/149 (25%), Positives = 49/149 (32%), Gaps = 16/149 (10%)
Query: 116 KRPHQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPR---LRGAAEETRDSD 172
KR AG GR+G GA E + G + G P LRG +
Sbjct: 1391 KRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQG 1450
Query: 173 LSELSDTD----PLSEPDPPAR--DAASPHQDGAPG-------PGPRGGRGQEWRPAPGP 219
L D P+ P P D+ + G PG PG +G +G P P
Sbjct: 1451 LPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQG 1510
Query: 220 APGQGAEASAQGRAEEEGLPAKAHADGEP 248
+ G E G + G P G P
Sbjct: 1511 SSGPKGEQGITGPSGPIGPPGPPGLPGPP 1539
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 44.7 bits (104), Expect = 4e-04
Identities = 63/219 (28%), Positives = 85/219 (38%), Gaps = 32/219 (14%)
Query: 102 ERARTPVDKRMYWLKRPH-QCDAGAGGRRGGAGA---PREWNVAYALG--SATGDDDE-- 153
+R TP +++ +LK + C AG G G AG P A+G A G E
Sbjct: 458 QRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGPKGDIGAIGPVGAPGPKGEKG 517
Query: 154 DDGGGPRLRGAAEETRDSDLSELSDTDPLSEPDPPARDAAS-----PHQDGAPG-PGPRG 207
D G GP +G E + L P PP RD + P + G PG PG G
Sbjct: 518 DVGIGPFGQG-----------EKGEKGSLGLPGPPGRDGSKGMRGEPGELGEPGLPGEVG 566
Query: 208 GRGQEWRPA-PGP-----APGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVGR 261
RG + P PGP APG E +G E+G G+P ++ R G
Sbjct: 567 MRGPQGPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSG 626
Query: 262 HWVPEARASVLRSIQDPW-QGPLVQEAPADGMKGPPSGR 299
P+ + P G +VQ+ G +G P R
Sbjct: 627 VAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPR 665
Score = 43.1 bits (100), Expect = 0.001
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 16/136 (11%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
+ GA G RG GAP +G D G P L+G + D +
Sbjct: 658 EQGAPGPRGHQGAPGPPGARGPIGPEGRD------GPPGLQGLRGKKGDMGPPGIPGLLG 711
Query: 182 LSEPDPPARDAASPHQDGAPG----------PGPRGGRGQEWRPAPGPAPGQGAEASAQG 231
L P P P G+PG PGP G G + P PG G
Sbjct: 712 LQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPG 771
Query: 232 RAEEEGLPAKAHADGE 247
E+GLP K GE
Sbjct: 772 ERGEDGLPGKPGLRGE 787
Score = 42.7 bits (99), Expect = 0.001
Identities = 61/252 (24%), Positives = 82/252 (32%), Gaps = 31/252 (12%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDD-EDDGGGPRLRGAAEETRDSDLSELSDTD 180
+ G G G G P ++ G+ + + G P L G E EL
Sbjct: 838 EKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPG--EPGLQGRPGELGPQG 895
Query: 181 PLSEPDPPARDAA-----SPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQG 231
P P ++ A + GAPG PGP G G P PG+ E +G
Sbjct: 896 PTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKG 955
Query: 232 RAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQGPLVQEAPADG 291
A EEG P G+P + G G+ P R S GPL +A
Sbjct: 956 AAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGS------PGLPGPLGTKAACGK 1009
Query: 292 MKGPPSGRATKTLESRPLGETLRGFCTSEDSDINITSGEEDHKEQPFPGVCNPKEKNSGR 351
++G E+ LG G C D G + P GV P +
Sbjct: 1010 VRGS---------ENCALG----GQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPP 1056
Query: 352 VPRALQDSRAAP 363
+ SR P
Sbjct: 1057 GDKGSPGSRGLP 1068
Score = 40.4 bits (93), Expect = 0.007
Identities = 38/123 (30%), Positives = 48/123 (39%), Gaps = 24/123 (19%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGA-AEETRDSDLSELSDTDPL 182
GA G G AG P + + G + G P + G +E RD
Sbjct: 1204 GADGIAGAAGPP---GIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDG----------- 1249
Query: 183 SEPDPPARDAASPHQDGAPG-PGPRGGRGQ---EWRPAPGPAPGQGAEASAQGRAEEEGL 238
+P PP P + G PG PGP G RG + APG E+ A G +EGL
Sbjct: 1250 -KPGPPGE----PGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGL 1304
Query: 239 PAK 241
P K
Sbjct: 1305 PGK 1307
Score = 40.0 bits (92), Expect = 0.009
Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 18/139 (12%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEET----------RDSDL 173
G G G AG P A G D G P RG + +D D
Sbjct: 1252 GPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDT 1311
Query: 174 SELSDTDPLSEPDPPARDAASPHQDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEASA 229
P PP ++ SP G PGP G +G +G+ P PG
Sbjct: 1312 GPTGPQGPQGPRGPPGKNG-SPGSPGEPGPSGTPGQKGSKGENGSPG---LPGFLGPRGP 1367
Query: 230 QGRAEEEGLPAKAHADGEP 248
G E+G+P K G+P
Sbjct: 1368 PGEPGEKGVPGKEGVPGKP 1386
Score = 38.5 bits (88), Expect = 0.026
Identities = 41/153 (26%), Positives = 56/153 (36%), Gaps = 27/153 (17%)
Query: 119 HQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGA----------AEET 168
+ C G G G G + V G + + + G P L G E
Sbjct: 1115 NDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERG 1174
Query: 169 RDSDLSELSDTD---------PLSEPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAP- 217
D ++ + D P P PP D + GA GP G +G G+E P P
Sbjct: 1175 ADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIA----GAAGPPGIQGSPGKEGPPGPQ 1230
Query: 218 GPA--PGQGAEASAQGRAEEEGLPAKAHADGEP 248
GP+ PG E +GR + G P + GEP
Sbjct: 1231 GPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEP 1263
Score = 36.2 bits (82), Expect = 0.13
Identities = 33/127 (25%), Positives = 42/127 (33%), Gaps = 28/127 (22%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDD--------EDDGGGPRLRGAAEETRDSDLSE 175
G G RG G P A G G ++ + D G P + G+ D +
Sbjct: 987 GEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGV 1046
Query: 176 LSDTDPLSEPDPPARDAASPHQDGAPG-PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAE 234
P P D SP G PG PGP+G G++ P G
Sbjct: 1047 AGPPGPSGPPG----DKGSPGSRGLPGFPGPQGPAGRDGAP---------------GNPG 1087
Query: 235 EEGLPAK 241
E G P K
Sbjct: 1088 ERGPPGK 1094
Score = 33.1 bits (74), Expect = 1.1
Identities = 38/145 (26%), Positives = 50/145 (34%), Gaps = 23/145 (15%)
Query: 119 HQCDAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSD 178
H D+GA G RG +GA L G +D GP + R S
Sbjct: 1280 HTGDSGAPGPRGESGA-------MGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSP 1332
Query: 179 TDPLSEPDPPARDA--ASPHQDGAPG-------------PGPRGGRGQEWRPAPGPAPGQ 223
P EP P S ++G+PG PG +G G+E P PG
Sbjct: 1333 GSP-GEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGF 1391
Query: 224 GAEASAQGRAEEEGLPAKAHADGEP 248
E G ++G P G+P
Sbjct: 1392 KGERGDPGIKGDKGPPGGKGQPGDP 1416
Score = 32.0 bits (71), Expect = 2.5
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 187 PPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHAD 245
PPA +S G PGP GP G G R P PG+ + +G + G + A
Sbjct: 1488 PPAYMKSS---QGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAK 1544
Query: 246 GEPKSGVRRRRKGVGRHWVP--EARASVLRSIQDPWQGPLVQEAPA--DGMKGPP 296
G+P + R +G +P + GP + PA G+ GPP
Sbjct: 1545 GDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPP 1599
Score = 31.2 bits (69), Expect = 4.2
Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 18/109 (16%)
Query: 156 GGGPRLRGAAEETRDSDLSELSDTDPLSEPDPPARDAASPHQDGAPGP----GPRGGRGQ 211
GG P L G ++ P PP +D +G PGP G G RG+
Sbjct: 728 GGSPGLPG--------EIGFPGKPGPPGPTGPPGKDG----PNGPPGPPGTKGEPGERGE 775
Query: 212 EWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRKGVG 260
+ P G+ E GR E+G A G P GVR + G
Sbjct: 776 DGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFP--GVRGEKGDQG 822
Score = 30.8 bits (68), Expect = 5.5
Identities = 53/209 (25%), Positives = 71/209 (33%), Gaps = 35/209 (16%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
D G+ G RG G P A G+ G P RG + S L D +
Sbjct: 1058 DKGSPGSRGLPGFPGPQGPAGRDGAP---------GNPGERGPPGKPGLSSLLSPGDINL 1108
Query: 182 LSEPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQGR----- 232
L A+D + G PG PG +G +G +P G+ EA G
Sbjct: 1109 L------AKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPG 1162
Query: 233 -AEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEAR-----ASVLRSIQDPWQGPLVQE 286
A +G + ADGE + GV P A + P P +Q
Sbjct: 1163 IAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGP---PGIQG 1219
Query: 287 APADGMKGPPSGRATKTLESRPLGETLRG 315
+P G +GPP + L P E G
Sbjct: 1220 SP--GKEGPPGPQGPSGLPGIPGEEGKEG 1246
Score = 30.8 bits (68), Expect = 5.5
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 181 PLSEPDPPARDAASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLP 239
P+ EP P + +G GP GP+G RG + P APG G +G G+P
Sbjct: 1516 PMGEPGRPGQGGL----EGPSGPIGPKGERGAKGDPG---APGVG----LRGEMGPPGIP 1564
Query: 240 AKAHADGEPKSGV 252
+ G K G+
Sbjct: 1565 GQPGEPGYAKDGL 1577
Score = 30.0 bits (66), Expect = 9.4
Identities = 53/195 (27%), Positives = 58/195 (29%), Gaps = 30/195 (15%)
Query: 124 GAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDPLS 183
G G RG G E G D G P G A E D P
Sbjct: 587 GLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVA-----GPQGEKGDVGPAG 641
Query: 184 EPDPPA-----------RDAASPH-QDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQ 230
P P + A P GAPGP G RG G E R P PG +
Sbjct: 642 PPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGP---PGLQGLRGKK 698
Query: 231 GRAEEEGLPAKAHADGEPKSGVRRRRKGVGRHWVPEARASVLRSIQDPWQ-GPLVQEAP- 288
G G+P G P GV P + I P + GP P
Sbjct: 699 GDMGPPGIPGLLGLQGPPGP------PGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPP 752
Query: 289 -ADGMKGPPSGRATK 302
DG GPP TK
Sbjct: 753 GKDGPNGPPGPPGTK 767
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 44.3 bits (103), Expect = 5e-04
Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 27/186 (14%)
Query: 96 EQWAAFERARTPVDKRMYWLKRPHQCDA----GAGGRRGGAGAPREWN---------VAY 142
E+ AA + +R+ + Y+ P G GG RGG G P ++ Y
Sbjct: 320 ERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGY 379
Query: 143 ALGSATGDDDE-----DDGGGPRLRGAAEETRDSDLSELSDTDPLSEPDPPARDAASPHQ 197
G ++ DDG R RG R + P PP R A Q
Sbjct: 380 DYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAP------PPPRGRGAPPPRGRAGYSQ 433
Query: 198 DGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRK 257
GAP PRG RG PA G+G+ S R G K ADG + +RR+
Sbjct: 434 RGAPLGPPRGSRGGRGGPAQ-QQRGRGSRGSRGNRGGNVG--GKRKADGYNQPDSKRRQT 490
Query: 258 GVGRHW 263
++W
Sbjct: 491 NNQQNW 496
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 44.3 bits (103), Expect = 5e-04
Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 27/186 (14%)
Query: 96 EQWAAFERARTPVDKRMYWLKRPHQCDA----GAGGRRGGAGAPREWN---------VAY 142
E+ AA + +R+ + Y+ P G GG RGG G P ++ Y
Sbjct: 421 ERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGY 480
Query: 143 ALGSATGDDDE-----DDGGGPRLRGAAEETRDSDLSELSDTDPLSEPDPPARDAASPHQ 197
G ++ DDG R RG R + P PP R A Q
Sbjct: 481 DYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAP------PPPRGRGAPPPRGRAGYSQ 534
Query: 198 DGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRK 257
GAP PRG RG PA G+G+ S R G K ADG + +RR+
Sbjct: 535 RGAPLGPPRGSRGGRGGPAQ-QQRGRGSRGSRGNRGGNVG--GKRKADGYNQPDSKRRQT 591
Query: 258 GVGRHW 263
++W
Sbjct: 592 NNQQNW 597
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 44.3 bits (103), Expect = 5e-04
Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 27/186 (14%)
Query: 96 EQWAAFERARTPVDKRMYWLKRPHQCDA----GAGGRRGGAGAPREWN---------VAY 142
E+ AA + +R+ + Y+ P G GG RGG G P ++ Y
Sbjct: 317 ERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGY 376
Query: 143 ALGSATGDDDE-----DDGGGPRLRGAAEETRDSDLSELSDTDPLSEPDPPARDAASPHQ 197
G ++ DDG R RG R + P PP R A Q
Sbjct: 377 DYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAP------PPPRGRGAPPPRGRAGYSQ 430
Query: 198 DGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRK 257
GAP PRG RG PA G+G+ S R G K ADG + +RR+
Sbjct: 431 RGAPLGPPRGSRGGRGGPAQ-QQRGRGSRGSRGNRGGNVG--GKRKADGYNQPDSKRRQT 487
Query: 258 GVGRHW 263
++W
Sbjct: 488 NNQQNW 493
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 44.3 bits (103), Expect = 5e-04
Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 27/186 (14%)
Query: 96 EQWAAFERARTPVDKRMYWLKRPHQCDA----GAGGRRGGAGAPREWN---------VAY 142
E+ AA + +R+ + Y+ P G GG RGG G P ++ Y
Sbjct: 418 ERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGY 477
Query: 143 ALGSATGDDDE-----DDGGGPRLRGAAEETRDSDLSELSDTDPLSEPDPPARDAASPHQ 197
G ++ DDG R RG R + P PP R A Q
Sbjct: 478 DYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAP------PPPRGRGAPPPRGRAGYSQ 531
Query: 198 DGAPGPGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSGVRRRRK 257
GAP PRG RG PA G+G+ S R G K ADG + +RR+
Sbjct: 532 RGAPLGPPRGSRGGRGGPAQ-QQRGRGSRGSRGNRGGNVG--GKRKADGYNQPDSKRRQT 588
Query: 258 GVGRHW 263
++W
Sbjct: 589 NNQQNW 594
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 43.9 bits (102), Expect = 6e-04
Identities = 52/211 (24%), Positives = 78/211 (36%), Gaps = 36/211 (17%)
Query: 161 LRGAAEETRDSDLSELSDTDPLSEPD-----PPARDAASPHQDGAPGPGPRGGRGQEWRP 215
L A E S+ + D+ +PD PPA+ A + Q+ A P P+G Q R
Sbjct: 377 LEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQ-APTSSQELAGAPEPQGSCAQGGRV 435
Query: 216 APGPAPGQGA---------EASAQGRAEEEGLPAKAHADGEPKSGVRRRRK--------- 257
APG P QGA + ++ +E EG + + A G R R+K
Sbjct: 436 APGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAG 495
Query: 258 --------GVGRHWVPEARASVLRSIQDPWQGPLV---QEAPADGMKGPPSGRA-TKTLE 305
GR P P + P + +E DG+ G +G A K E
Sbjct: 496 ALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDGLCGLGNGCADRKEAE 555
Query: 306 SRPLGETLRGFCTSEDSDINITSGEEDHKEQ 336
+ L G E D ++ EE+ ++
Sbjct: 556 TESQNSELSGVTAGESLDQSMEEEEEEDTDE 586
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 43.9 bits (102), Expect = 6e-04
Identities = 52/211 (24%), Positives = 78/211 (36%), Gaps = 36/211 (17%)
Query: 161 LRGAAEETRDSDLSELSDTDPLSEPD-----PPARDAASPHQDGAPGPGPRGGRGQEWRP 215
L A E S+ + D+ +PD PPA+ A + Q+ A P P+G Q R
Sbjct: 377 LEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQ-APTSSQELAGAPEPQGSCAQGGRV 435
Query: 216 APGPAPGQGA---------EASAQGRAEEEGLPAKAHADGEPKSGVRRRRK--------- 257
APG P QGA + ++ +E EG + + A G R R+K
Sbjct: 436 APGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAG 495
Query: 258 --------GVGRHWVPEARASVLRSIQDPWQGPLV---QEAPADGMKGPPSGRA-TKTLE 305
GR P P + P + +E DG+ G +G A K E
Sbjct: 496 ALAQGSSLEPGRPAAPSLPGEAEPGAHAPDKEPELGGQEEGERDGLCGLGNGCADRKEAE 555
Query: 306 SRPLGETLRGFCTSEDSDINITSGEEDHKEQ 336
+ L G E D ++ EE+ ++
Sbjct: 556 TESQNSELSGVTAGESLDQSMEEEEEEDTDE 586
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 43.9 bits (102), Expect = 6e-04
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 32/183 (17%)
Query: 278 PWQGPLVQEAPADGMKGPPS-----GRATKTLESRPLGETLRGFCTSEDSDINITSGEED 332
PW+ P + P G+ G PS GRA T+ + P+ + G C + GE+
Sbjct: 42 PWEAPAPMKTPEAGLAGRPSPWTTPGRAAATVPAAPM-QLFNGGCPPPPP---VLDGEDV 97
Query: 333 HKE-------QPFPGVCNPKEKNSGRVPRALQDSRAAPAEGLCCYICGAPLSPASHHQVH 385
+ P P V P E+ + P + S A E L LSP
Sbjct: 98 LPDLDLLPPPPPPPPVLLPSEEEA---PAPMGASLIADLEQL-------HLSPPPPPPQA 147
Query: 386 VQKQEKLAQAPFFPFLWLHSPPPGAQPISEGGSTLVCASCFSSLTQQWQSFELANVPVLQ 445
+ + P P + PPP A+P+ +G ST +CA C +++ + ELA V ++
Sbjct: 148 PAEGPSVQPGPLRP-MEEELPPPPAEPVEKGASTDICAFCHKTVSPR----ELA-VEAMK 201
Query: 446 RLY 448
R Y
Sbjct: 202 RQY 204
Score = 32.3 bits (72), Expect = 1.9
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 621 PFFPFLTVYPPAPRARPVDSTGLVATCVLCYHDLLAQWLQHEARSSHHAVSAWSRQYQVE 680
P P PP P A PV+ C C+ + + L AV A RQY +
Sbjct: 158 PLRPMEEELPPPP-AEPVEKGASTDICAFCHKTVSPREL---------AVEAMKRQYHAQ 207
Query: 681 TFVCFFCQQE 690
F C C+++
Sbjct: 208 CFTCRTCRRQ 217
>gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]
Length = 373
Score = 43.9 bits (102), Expect = 6e-04
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 32/183 (17%)
Query: 278 PWQGPLVQEAPADGMKGPPS-----GRATKTLESRPLGETLRGFCTSEDSDINITSGEED 332
PW+ P + P G+ G PS GRA T+ + P+ + G C + GE+
Sbjct: 42 PWEAPAPMKTPEAGLAGRPSPWTTPGRAAATVPAAPM-QLFNGGCPPPPP---VLDGEDV 97
Query: 333 HKE-------QPFPGVCNPKEKNSGRVPRALQDSRAAPAEGLCCYICGAPLSPASHHQVH 385
+ P P V P E+ + P + S A E L LSP
Sbjct: 98 LPDLDLLPPPPPPPPVLLPSEEEA---PAPMGASLIADLEQL-------HLSPPPPPPQA 147
Query: 386 VQKQEKLAQAPFFPFLWLHSPPPGAQPISEGGSTLVCASCFSSLTQQWQSFELANVPVLQ 445
+ + P P + PPP A+P+ +G ST +CA C +++ + ELA V ++
Sbjct: 148 PAEGPSVQPGPLRP-MEEELPPPPAEPVEKGASTDICAFCHKTVSPR----ELA-VEAMK 201
Query: 446 RLY 448
R Y
Sbjct: 202 RQY 204
Score = 32.3 bits (72), Expect = 1.9
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 621 PFFPFLTVYPPAPRARPVDSTGLVATCVLCYHDLLAQWLQHEARSSHHAVSAWSRQYQVE 680
P P PP P A PV+ C C+ + + L AV A RQY +
Sbjct: 158 PLRPMEEELPPPP-AEPVEKGASTDICAFCHKTVSPREL---------AVEAMKRQYHAQ 207
Query: 681 TFVCFFCQQE 690
F C C+++
Sbjct: 208 CFTCRTCRRQ 217
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 43.5 bits (101), Expect = 8e-04
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 193 ASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSG 251
+S +Q G PGP GP G G P PG PG QG E GLP + G SG
Sbjct: 1772 SSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSG 1831
Query: 252 VR 253
R
Sbjct: 1832 PR 1833
Score = 33.1 bits (74), Expect = 1.1
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 184 EPDPPARDAASPHQDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLP 239
EP P R +P G PGP G RG G++ P PG + G G P
Sbjct: 1652 EPGLPGR-TGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKP 1710
Query: 240 AKAHADGEPKSGVRRRRKG 258
K G P + KG
Sbjct: 1711 GKPGDHGRPGPSGLKGEKG 1729
Score = 33.1 bits (74), Expect = 1.1
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 174 SELSDTDPLSEPDPPARDAASPHQDGAPGPGPR----GGRGQEWRPAPGPAPGQGAEASA 229
S + P P PP A G PGPG R G G + P PG+ E
Sbjct: 1772 SSRNQPGPPGPPGPPGSAGAR----GEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGT 1827
Query: 230 QGRAEEEGLPAKAHADGEPKSG 251
G + GLP GE ++G
Sbjct: 1828 -GSSGPRGLPGPPGPQGESRTG 1848
Score = 32.0 bits (71), Expect = 2.5
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 180 DPLSEPDPPARDAASPHQDGAPG----------PGPRGGRGQEW-RPAPGPA-------P 221
D + P PP A P G G PGPRG G + PGP P
Sbjct: 1580 DSVGPPGPPG-PAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIP 1638
Query: 222 GQGAEASAQGRAEEEGLPAKAHADGEP 248
G+ +G A E GLP + G P
Sbjct: 1639 GEQGRQGMKGDAGEPGLPGRTGTPGLP 1665
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 43.5 bits (101), Expect = 8e-04
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 193 ASPHQDGAPGP-GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLPAKAHADGEPKSG 251
+S +Q G PGP GP G G P PG PG QG E GLP + G SG
Sbjct: 2936 SSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSG 2995
Query: 252 VR 253
R
Sbjct: 2996 PR 2997
Score = 33.1 bits (74), Expect = 1.1
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 184 EPDPPARDAASPHQDGAPGP----GPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEGLP 239
EP P R +P G PGP G RG G++ P PG + G G P
Sbjct: 2816 EPGLPGR-TGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKP 2874
Query: 240 AKAHADGEPKSGVRRRRKG 258
K G P + KG
Sbjct: 2875 GKPGDHGRPGPSGLKGEKG 2893
Score = 33.1 bits (74), Expect = 1.1
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 174 SELSDTDPLSEPDPPARDAASPHQDGAPGPGPR----GGRGQEWRPAPGPAPGQGAEASA 229
S + P P PP A G PGPG R G G + P PG+ E
Sbjct: 2936 SSRNQPGPPGPPGPPGSAGAR----GEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGT 2991
Query: 230 QGRAEEEGLPAKAHADGEPKSG 251
G + GLP GE ++G
Sbjct: 2992 -GSSGPRGLPGPPGPQGESRTG 3012
Score = 32.0 bits (71), Expect = 2.5
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 180 DPLSEPDPPARDAASPHQDGAPG----------PGPRGGRGQEW-RPAPGPA-------P 221
D + P PP A P G G PGPRG G + PGP P
Sbjct: 2744 DSVGPPGPPG-PAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIP 2802
Query: 222 GQGAEASAQGRAEEEGLPAKAHADGEP 248
G+ +G A E GLP + G P
Sbjct: 2803 GEQGRQGMKGDAGEPGLPGRTGTPGLP 2829
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 43.5 bits (101), Expect = 8e-04
Identities = 38/122 (31%), Positives = 43/122 (35%), Gaps = 25/122 (20%)
Query: 122 DAGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDLSELSDTDP 181
D GA G +G G P A GS+ DE G P G E
Sbjct: 363 DPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGPPGEKGE-------------- 408
Query: 182 LSEPDPPARDAASPHQDGAPG----PGPRGGRGQEWRPAPGPAPGQGAEASAQGRAEEEG 237
A D +P DGAPG PG RG RG P PG+ QGR G
Sbjct: 409 -------AGDEGNPGPDGAPGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVG 461
Query: 238 LP 239
+P
Sbjct: 462 VP 463
Score = 36.2 bits (82), Expect = 0.13
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 191 DAASPHQDGAPG-PGPRGGRGQEWRPA-PGPAPGQGAEASAQGRAEEEGLPAKAHADGE 247
+ P DG G PG G G E +P PGP PG+ EA +G +G P + GE
Sbjct: 372 EKGEPGADGEAGRPGSSGPSGDEGQPGEPGP-PGEKGEAGDEGNPGPDGAPGERGGPGE 429
Score = 36.2 bits (82), Expect = 0.13
Identities = 43/138 (31%), Positives = 51/138 (36%), Gaps = 18/138 (13%)
Query: 123 AGAGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRG--AAEETRD--SDLSELSD 178
+G G+ G G P E A G+ D + GGP RG TR D E
Sbjct: 391 SGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGTRGPRGDPGEAGP 450
Query: 179 TDPLSEPDPPARDAASPHQDGAPGP-GPRGGRGQEWRP-------APGPAPGQGAEASAQ 230
P P G GP GP+G RG E P APGPA G +
Sbjct: 451 QGDQGREGP----VGVPGDPGEAGPIGPKGYRGDEGPPGSEGARGAPGPA-GPPGDPGLM 505
Query: 231 GRAEEEGLPAKAHADGEP 248
G E+G PA +G P
Sbjct: 506 GERGEDG-PAGNGTEGFP 522
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,124,588
Number of Sequences: 37866
Number of extensions: 2564723
Number of successful extensions: 17281
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 613
Number of HSP's that attempted gapping in prelim test: 11644
Number of HSP's gapped (non-prelim): 3681
length of query: 847
length of database: 18,247,518
effective HSP length: 111
effective length of query: 736
effective length of database: 14,044,392
effective search space: 10336672512
effective search space used: 10336672512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.