Guide to the Human Genome
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Name: LOC123855 Sequence: fasta or formatted (847aa) NCBI GI: 113426210
Description:

PREDICTED: similar to hCG2042536

Not currently referenced in the text

Other entries for this name:
alt prot {847aa} PREDICTED: similar to hCG2042536
alt prot {556aa} PREDICTED: similar to hCG2042536
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         95           3
 C cysteine            4.1         35           2
 D aspartate           4.0         34           3
 E glutamate           5.9         50           3
 F phenylalanine       3.7         31           2
 G glycine             9.8         83           3
 H histidine           2.6         22           2
 I isoleucine          1.5         13           2
 K lysine              3.1         26           2
 L leucine             8.9         75           2
 M methionine          1.1          9           1
 N asparagine          1.8         15           1
 P proline             9.6         81           3
 Q glutamine           5.7         48           3
 R arginine            7.7         65           4
 S serine              7.8         66           2
 T threonine           3.0         25           1
 V valine              5.3         45           2
 W tryptophan          1.5         13           1
 Y tyrosine            1.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042536 
LOC123855             0.999   PREDICTED: similar to hCG2042536 
LOC123855             0.652   PREDICTED: similar to hCG2042536 
COL11A1               0.017   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.017   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.017   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL2A1                0.013   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.013   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL3A1                0.013   collagen type III alpha 1 preproprotein 
PHOX2B                0.013   paired-like homeobox 2b 
COL5A3                0.013   collagen, type V, alpha 3 preproprotein 
COL1A1                0.012   alpha 1 type I collagen preproprotein 
COL17A1               0.012   alpha 1 type XVII collagen 
COL6A2                0.011   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.011   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A2                0.011   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
HCN2                  0.011   hyperpolarization activated cyclic nucleotide-gated...
COL5A1                0.011   alpha 1 type V collagen preproprotein 
COL22A1               0.011   collagen, type XXII, alpha 1 
HNRNPR                0.011   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.011   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.011   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.011   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
CTDP1                 0.011   CTD (carboxy-terminal domain, RNA polymerase II, pol...
CTDP1                 0.011   CTD (carboxy-terminal domain, RNA polymerase II, pol...
FBLIM1                0.011   filamin-binding LIM protein-1 isoform b 
FBLIM1                0.011   filamin-binding LIM protein-1 isoform a 
COL12A1               0.011   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.011   collagen, type XII, alpha 1 long isoform precursor [...
COL6A1                0.011   collagen, type VI, alpha 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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