Guide to the Human Genome
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Name: LOC123855 Sequence: fasta or formatted (556aa) NCBI GI: 239756641
Description:

PREDICTED: similar to hCG2042536

Not currently referenced in the text

Other entries for this name:
alt prot {847aa} PREDICTED: similar to hCG2042536
alt prot {847aa} PREDICTED: similar to hCG2042536
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         52           3
 C cysteine            5.0         28           2
 D aspartate           2.9         16           2
 E glutamate           5.4         30           2
 F phenylalanine       4.5         25           2
 G glycine             7.2         40           2
 H histidine           3.2         18           2
 I isoleucine          1.8         10           2
 K lysine              3.1         17           2
 L leucine            10.4         58           2
 M methionine          1.1          6           1
 N asparagine          2.5         14           1
 P proline             8.8         49           3
 Q glutamine           5.8         32           2
 R arginine            6.5         36           2
 S serine              9.4         52           2
 T threonine           3.6         20           1
 V valine              5.8         32           2
 W tryptophan          1.3          7           1
 Y tyrosine            2.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042536 
LOC123855             1.000   PREDICTED: similar to hCG2042536 
LOC123855             1.000   PREDICTED: similar to hCG2042536 
FBLIM1                0.007   filamin-binding LIM protein-1 isoform b 
FBLIM1                0.007   filamin-binding LIM protein-1 isoform a 
CACNA1H               0.006   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.006   calcium channel, voltage-dependent, T type, alpha 1H...
BCL11B                0.005   B-cell CLL/lymphoma 11B isoform 1 
FASTK                 0.004   Fas-activated serine/threonine kinase isoform 4 [Hom...
ACIN1                 0.004   apoptotic chromatin condensation inducer 1 
LOC283104             0.004   PREDICTED: hypothetical protein 
LOC283104             0.004   PREDICTED: hypothetical protein 
LOC283104             0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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