LOC123855 1279

Name: LOC123855	Sequence: fasta or formatted (847aa)		NCBI GI: 113426528
Description: PREDICTED: similar to hCG2042536		Not currently referenced in the text
Other entries for this name: alt prot {847aa} PREDICTED: similar to hCG2042536 alt prot {556aa} PREDICTED: similar to hCG2042536
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.3 96 3 C cysteine 4.1 35 2 D aspartate 4.0 34 3 E glutamate 5.9 50 3 F phenylalanine 3.7 31 2 G glycine 9.8 83 3 H histidine 2.6 22 2 I isoleucine 1.5 13 2 K lysine 3.1 26 2 L leucine 8.9 75 2 M methionine 1.1 9 1 N asparagine 1.8 15 1 P proline 9.6 81 3 Q glutamine 5.7 48 3 R arginine 7.7 65 4 S serine 7.7 65 2 T threonine 3.0 25 1 V valine 5.3 45 2 W tryptophan 1.5 13 1 Y tyrosine 1.9 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to hCG2042536 LOC123855 0.999 PREDICTED: similar to hCG2042536 LOC123855 0.652 PREDICTED: similar to hCG2042536 COL11A1 0.016 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.016 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.016 alpha 1 type XI collagen isoform A preproprotein [Ho... PHOX2B 0.014 paired-like homeobox 2b COL2A1 0.013 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.013 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL3A1 0.013 collagen type III alpha 1 preproprotein COL5A3 0.013 collagen, type V, alpha 3 preproprotein COL17A1 0.012 alpha 1 type XVII collagen COL1A1 0.011 alpha 1 type I collagen preproprotein COL6A2 0.011 alpha 2 type VI collagen isoform 2C2a' precursor [H... COL6A2 0.011 alpha 2 type VI collagen isoform 2C2a precursor [Ho... COL6A2 0.011 alpha 2 type VI collagen isoform 2C2 precursor [Hom... HCN2 0.011 hyperpolarization activated cyclic nucleotide-gated... COL5A1 0.011 alpha 1 type V collagen preproprotein HNRNPR 0.011 heterogeneous nuclear ribonucleoprotein R isoform 3... HNRNPR 0.011 heterogeneous nuclear ribonucleoprotein R isoform 1... HNRNPR 0.011 heterogeneous nuclear ribonucleoprotein R isoform 4... HNRNPR 0.011 heterogeneous nuclear ribonucleoprotein R isoform 2 [... FBLIM1 0.011 filamin-binding LIM protein-1 isoform b FBLIM1 0.011 filamin-binding LIM protein-1 isoform a COL22A1 0.011 collagen, type XXII, alpha 1 CTDP1 0.011 CTD (carboxy-terminal domain, RNA polymerase II, pol... CTDP1 0.011 CTD (carboxy-terminal domain, RNA polymerase II, pol... LOC100293055 0.011 PREDICTED: similar to COL22A1 protein COL6A1 0.011 collagen, type VI, alpha 1 precursor PABPN1 0.010 poly(A) binding protein, nuclear 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.