Guide to the Human Genome
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Name: HNRNPR Sequence: fasta or formatted (535aa) NCBI GI: 156151396
Description:

heterogeneous nuclear ribonucleoprotein R isoform 3

Referenced in:

hnRNP
RNA Editing and Other RNA Modifications

Other entries for this name:
alt prot [532aa] heterogeneous nuclear ribonucleoprotein R isoform 4
alt prot [636aa] heterogeneous nuclear ribonucleoprotein R isoform 1
alt prot [633aa] heterogeneous nuclear ribonucleoprotein R isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         31           2
 C cysteine            0.7          4           1
 D aspartate           6.2         33           2
 E glutamate           7.1         38           2
 F phenylalanine       2.6         14           1
 G glycine            13.6         73           3
 H histidine           1.1          6           1
 I isoleucine          3.0         16           1
 K lysine              7.3         39           3
 L leucine             4.9         26           2
 M methionine          1.5          8           2
 N asparagine          3.6         19           2
 P proline             7.5         40           4
 Q glutamine           5.2         28           3
 R arginine            8.6         46           3
 S serine              4.1         22           1
 T threonine           3.4         18           2
 V valine              5.8         31           2
 W tryptophan          0.9          5           1
 Y tyrosine            7.1         38           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein R isoform 3... 
HNRNPR                1.000   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.990   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.990   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
SYNCRIP               0.811   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.733   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.689   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.686   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.686   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.609   synaptotagmin binding, cytoplasmic RNA interacting ...
RBM47                 0.309   RNA binding motif protein 47 isoform a 
RBM47                 0.295   RNA binding motif protein 47 isoform b 
RBM46                 0.286   RNA binding motif protein 46 
A1CF                  0.278   apobec-1 complementation factor isoform 2 
A1CF                  0.278   apobec-1 complementation factor isoform 1 
A1CF                  0.262   apobec-1 complementation factor isoform 3 
DND1                  0.097   dead end homolog 1 
PABPC4L               0.056   poly(A) binding protein, cytoplasmic 4-like 
RBMX                  0.056   RNA binding motif protein, X-linked 
RBMXL1                0.056   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.056   RNA binding motif protein, X-linked-like 1 
PABPC4                0.056   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.056   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.056   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
HNRNPA3               0.056   heterogeneous nuclear ribonucleoprotein A3 
PABPC3                0.054   poly(A) binding protein, cytoplasmic 3 
BRUNOL5               0.053   bruno-like 5, RNA binding protein isoform 1 
PABPC1L               0.053   poly(A)-binding protein, cytoplasmic 1-like 
HNRNPA0               0.051   heterogeneous nuclear ribonucleoprotein A0 
PABPC1                0.050   poly(A) binding protein, cytoplasmic 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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