Guide to the Human Genome
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Name: LPXN Sequence: fasta or formatted (391aa) NCBI GI: 221316659
Description:

leupaxin isoform 1

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [386aa] leupaxin isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         27           3
 C cysteine            5.9         23           1
 D aspartate           5.1         20           1
 E glutamate           7.4         29           2
 F phenylalanine       5.6         22           2
 G glycine             5.9         23           2
 H histidine           5.4         21           2
 I isoleucine          3.1         12           1
 K lysine              5.6         22           2
 L leucine             9.5         37           2
 M methionine          2.0          8           1
 N asparagine          2.8         11           1
 P proline             6.9         27           3
 Q glutamine           4.9         19           1
 R arginine            3.1         12           2
 S serine              7.9         31           3
 T threonine           5.1         20           2
 V valine              3.3         13           1
 W tryptophan          0.8          3           1
 Y tyrosine            2.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leupaxin isoform 1 
LPXN                  0.983   leupaxin isoform 2 
PXN                   0.517   paxillin isoform 3 
PXN                   0.517   paxillin isoform 2 
PXN                   0.507   paxillin isoform 1 
TGFB1I1               0.430   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.430   transforming growth factor beta 1 induced transcript...
LDB3                  0.165   LIM domain binding 3 isoform 2 
LDB3                  0.165   LIM domain binding 3 isoform 1 
PDLIM5                0.160   PDZ and LIM domain 5 isoform b 
PDLIM5                0.160   PDZ and LIM domain 5 isoform a 
LIMS1                 0.142   LIM and senescent cell antigen-like domains 1 
LIMS2                 0.137   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.137   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.137   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.137   LIM and senescent cell antigen-like domains 2 isofor...
PDLIM7                0.136   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.136   PDZ and LIM domain 7 isoform 1 
ABLIM1                0.122   actin-binding LIM protein 1 isoform c 
ABLIM1                0.122   actin-binding LIM protein 1 isoform b 
ABLIM1                0.122   actin-binding LIM protein 1 isoform a 
FHL5                  0.118   activator of cAMP-responsive element modulator (CREM...
FHL3                  0.117   four and a half LIM domains 3 
ABLIM3                0.115   actin binding LIM protein family, member 3 
FHL1                  0.113   four and a half LIM domains 1 isoform 2 
FHL1                  0.113   four and a half LIM domains 1 isoform 2 
FHL1                  0.113   four and a half LIM domains 1 isoform 3 
FHL1                  0.113   four and a half LIM domains 1 isoform 5 
FHL1                  0.113   four and a half LIM domains 1 isoform 2 
ABLIM2                0.111   actin binding LIM protein family, member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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