Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC284297 Sequence: fasta or formatted (1573aa) NCBI GI: 222352122
Description:

hypothetical protein LOC284297

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2        129           2
 C cysteine            2.7         43           1
 D aspartate           5.8         92           2
 E glutamate           4.6         72           4
 F phenylalanine       1.1         17           2
 G glycine             9.0        141           3
 H histidine           3.2         50           2
 I isoleucine          1.4         22           2
 K lysine              2.1         33           2
 L leucine             7.4        116           3
 M methionine          1.5         23           1
 N asparagine          1.1         17           2
 P proline            14.7        231           3
 Q glutamine           2.5         40           2
 R arginine            5.9         93           2
 S serine              8.1        127           3
 T threonine          13.2        208           4
 V valine              4.5         70           2
 W tryptophan          2.5         40           1
 Y tyrosine            0.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284297 
DMBT1                 0.140   deleted in malignant brain tumors 1 isoform b precu...
LOC100291777          0.138   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.137   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.136   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.136   deleted in malignant brain tumors 1 isoform a precu...
SRCRB4D               0.121   scavenger receptor cysteine rich domain containing, ...
CD163                 0.098   CD163 antigen isoform b 
CD163                 0.098   CD163 antigen isoform a 
CD163L1               0.091   scavenger receptor cysteine-rich type 1 precursor [H...
PRSS12                0.078   neurotrypsin precursor 
LOC651581             0.072   PREDICTED: hypothetical protein 
CD5L                  0.071   CD5 molecule-like 
MUC2                  0.067   mucin 2 precursor 
LOXL4                 0.056   lysyl oxidase-like 4 precursor 
LOXL3                 0.051   lysyl oxidase-like 3 precursor 
LOC100294420          0.051   PREDICTED: similar to mucin 2 
CD6                   0.046   CD6 molecule 
PRG4                  0.044   proteoglycan 4 isoform D 
PRG4                  0.044   proteoglycan 4 isoform C 
PRG4                  0.044   proteoglycan 4 isoform B 
LOXL2                 0.044   lysyl oxidase-like 2 precursor 
PRG4                  0.044   proteoglycan 4 isoform A 
LOC100128719          0.039   PREDICTED: hypothetical protein, partial 
LOC100128719          0.039   PREDICTED: hypothetical protein, partial 
MUC6                  0.039   mucin 6, gastric 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
MUC17                 0.036   mucin 17 
NACA                  0.034   nascent polypeptide-associated complex alpha subuni...
MUC4                  0.033   mucin 4 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press