Guide to the Human Genome
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Name: SYNPO2L Sequence: fasta or formatted (753aa) NCBI GI: 50301232
Description:

synaptopodin 2-like isoform b

Referenced in:

Synapses

Other entries for this name:
alt prot [977aa] synaptopodin 2-like isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         90           3
 C cysteine            0.5          4           1
 D aspartate           2.4         18           1
 E glutamate           6.0         45           3
 F phenylalanine       3.2         24           2
 G glycine             7.8         59           3
 H histidine           0.8          6           1
 I isoleucine          2.1         16           1
 K lysine              3.6         27           2
 L leucine             7.3         55           2
 M methionine          1.5         11           1
 N asparagine          1.6         12           1
 P proline            17.1        129           3
 Q glutamine           5.0         38           2
 R arginine            7.3         55           3
 S serine             10.1         76           2
 T threonine           6.1         46           3
 V valine              3.7         28           2
 W tryptophan          0.5          4           1
 Y tyrosine            1.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptopodin 2-like isoform b 
SYNPO2L               0.957   synaptopodin 2-like isoform a 
SYNPO2                0.213   synaptopodin 2 isoform b 
SYNPO2                0.209   synaptopodin 2 isoform c 
SYNPO2                0.208   synaptopodin 2 isoform a 
SYNPO                 0.086   synaptopodin isoform B 
SYNPO                 0.081   synaptopodin isoform A 
NACA                  0.055   nascent polypeptide-associated complex alpha subuni...
PRG4                  0.049   proteoglycan 4 isoform D 
PRG4                  0.049   proteoglycan 4 isoform C 
PRG4                  0.049   proteoglycan 4 isoform B 
PRG4                  0.049   proteoglycan 4 isoform A 
FLJ22184              0.047   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.046   myeloid/lymphoid or mixed-lineage leukemia 2 
FMN2                  0.045   formin 2 
RAPH1                 0.042   Ras association and pleckstrin homology domains 1 is...
FLJ22184              0.042   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.041   PREDICTED: hypothetical protein LOC80164 
SRCAP                 0.039   Snf2-related CBP activator protein 
PRB2                  0.038   proline-rich protein BstNI subfamily 2 
C6orf132              0.036   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.036   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.036   PREDICTED: hypothetical protein LOC647024 
MYO15A                0.035   myosin XV 
KIAA1522              0.035   hypothetical protein LOC57648 
MUC2                  0.035   mucin 2 precursor 
PTPN23                0.031   protein tyrosine phosphatase, non-receptor type 23 [...
MBD6                  0.031   methyl-CpG binding domain protein 6 
BAT2                  0.031   HLA-B associated transcript-2 
MLL4                  0.031   myeloid/lymphoid or mixed-lineage leukemia 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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