SYNPO 6454

Name: SYNPO	Sequence: fasta or formatted (685aa)		NCBI GI: 158303333
Description: synaptopodin isoform B		Referenced in: Synapses
Other entries for this name: alt prot [903aa] synaptopodin isoform A
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.2 70 3 C cysteine 0.7 5 1 D aspartate 2.5 17 1 E glutamate 6.6 45 4 F phenylalanine 2.2 15 1 G glycine 4.2 29 2 H histidine 1.5 10 1 I isoleucine 1.9 13 1 K lysine 4.2 29 1 L leucine 7.6 52 2 M methionine 1.9 13 2 N asparagine 3.2 22 1 P proline 14.3 98 3 Q glutamine 4.8 33 2 R arginine 6.7 46 2 S serine 13.4 92 3 T threonine 5.8 40 3 V valine 5.4 37 2 W tryptophan 0.7 5 1 Y tyrosine 2.0 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptopodin isoform B SYNPO 0.984 synaptopodin isoform A SYNPO2L 0.096 synaptopodin 2-like isoform a SYNPO2L 0.096 synaptopodin 2-like isoform b SYNPO2 0.065 synaptopodin 2 isoform b SYNPO2 0.057 synaptopodin 2 isoform c SYNPO2 0.056 synaptopodin 2 isoform a MLL2 0.042 myeloid/lymphoid or mixed-lineage leukemia 2 NACA 0.037 nascent polypeptide-associated complex alpha subuni... SRRM1 0.031 serine/arginine repetitive matrix 1 PRG4 0.030 proteoglycan 4 isoform D PRG4 0.030 proteoglycan 4 isoform C PRG4 0.030 proteoglycan 4 isoform B PRG4 0.030 proteoglycan 4 isoform A FLJ22184 0.030 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.030 PREDICTED: hypothetical protein LOC80164 FLJ22184 0.028 PREDICTED: hypothetical protein FLJ22184 SRRM2 0.027 splicing coactivator subunit SRm300 KDM6B 0.025 lysine (K)-specific demethylase 6B SRCAP 0.024 Snf2-related CBP activator protein CASKIN1 0.022 CASK interacting protein 1 MUC17 0.022 mucin 17 NEFH 0.022 neurofilament, heavy polypeptide 200kDa LOC100133756 0.022 PREDICTED: hypothetical protein, partial OTOG 0.022 PREDICTED: otogelin isoform 2 OTOG 0.022 PREDICTED: otogelin isoform 1 MUC12 0.021 PREDICTED: mucin 12 MUC2 0.021 mucin 2 precursor OTOG 0.021 PREDICTED: otogelin isoform 1 OTOG 0.021 PREDICTED: otogelin isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.