MDC1 3113

Name: MDC1	Sequence: fasta or formatted (2089aa)		NCBI GI: 132626688
Description: mediator of DNA-damage checkpoint 1		Referenced in: DNases, Recombination, and DNA Repair
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.9 144 3 C cysteine 1.0 20 2 D aspartate 4.9 102 3 E glutamate 9.8 204 5 F phenylalanine 1.5 32 2 G glycine 5.4 112 2 H histidine 1.6 34 1 I isoleucine 2.7 56 2 K lysine 4.9 103 2 L leucine 6.5 136 3 M methionine 0.9 19 1 N asparagine 1.8 37 1 P proline 11.8 247 4 Q glutamine 6.0 125 2 R arginine 7.1 148 2 S serine 9.6 201 3 T threonine 9.5 198 3 V valine 7.4 154 2 W tryptophan 0.4 8 1 Y tyrosine 0.4 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 mediator of DNA-damage checkpoint 1 PRG4 0.044 proteoglycan 4 isoform D PRG4 0.044 proteoglycan 4 isoform C PRG4 0.044 proteoglycan 4 isoform B PRG4 0.044 proteoglycan 4 isoform A MUC2 0.035 mucin 2 precursor NACA 0.032 nascent polypeptide-associated complex alpha subuni... MUC17 0.029 mucin 17 MUC6 0.028 mucin 6, gastric LOC100294420 0.028 PREDICTED: similar to mucin 2 ZAN 0.024 zonadhesin isoform 3 ZAN 0.024 zonadhesin isoform 6 SRRM2 0.023 splicing coactivator subunit SRm300 MUC3A 0.023 PREDICTED: mucin 3A, intestinal LOC284297 0.022 hypothetical protein LOC284297 LOC100294236 0.022 PREDICTED: similar to diffuse panbronchiolitis crit... MUC5B 0.021 mucin 5, subtype B, tracheobronchial MUC3A 0.021 PREDICTED: mucin 3A, cell surface associated, parti... FLJ22184 0.021 PREDICTED: hypothetical protein FLJ22184 PAXIP1 0.020 PAX interacting protein 1 DPCR1 0.020 diffuse panbronchiolitis critical region 1 protein ... MUC12 0.019 PREDICTED: mucin 12 SRRM1 0.019 serine/arginine repetitive matrix 1 MUC16 0.019 mucin 16 LOC100133756 0.018 PREDICTED: hypothetical protein, partial POLR2A 0.018 DNA-directed RNA polymerase II A MUC4 0.018 mucin 4 isoform a NEFH 0.018 neurofilament, heavy polypeptide 200kDa NACAD 0.018 NAC alpha domain containing NACAD 0.018 PREDICTED: NAC alpha domain containing Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.