Guide to the Human Genome
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Name: SYNPO Sequence: fasta or formatted (903aa) NCBI GI: 40353727
Description:

synaptopodin isoform A

Referenced in:

Synapses

Other entries for this name:
alt prot [685aa] synaptopodin isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         91           3
 C cysteine            0.8          7           1
 D aspartate           2.5         23           1
 E glutamate           5.9         53           4
 F phenylalanine       1.8         16           1
 G glycine             4.9         44           2
 H histidine           1.1         10           1
 I isoleucine          2.0         18           2
 K lysine              3.3         30           1
 L leucine             7.4         67           2
 M methionine          1.8         16           2
 N asparagine          3.0         27           1
 P proline            17.2        155          12
 Q glutamine           4.0         36           2
 R arginine            7.9         71           2
 S serine             14.1        127           3
 T threonine           5.2         47           3
 V valine              4.4         40           2
 W tryptophan          1.0          9           1
 Y tyrosine            1.8         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptopodin isoform A 
SYNPO                 0.734   synaptopodin isoform B 
SYNPO2L               0.068   synaptopodin 2-like isoform a 
SYNPO2L               0.068   synaptopodin 2-like isoform b 
SYNPO2                0.052   synaptopodin 2 isoform a 
NACA                  0.050   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.045   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
SYNPO2                0.042   synaptopodin 2 isoform c 
SYNPO2                0.042   synaptopodin 2 isoform b 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.039   myeloid/lymphoid or mixed-lineage leukemia 2 
PCLO                  0.038   piccolo isoform 2 
PCLO                  0.038   piccolo isoform 1 
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 
PRG4                  0.034   proteoglycan 4 isoform D 
PRG4                  0.034   proteoglycan 4 isoform C 
PRG4                  0.034   proteoglycan 4 isoform B 
PRG4                  0.034   proteoglycan 4 isoform A 
C6orf132              0.033   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.033   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.033   PREDICTED: hypothetical protein LOC647024 
FMN2                  0.032   formin 2 
POLR2A                0.032   DNA-directed RNA polymerase II A 
SRRM1                 0.032   serine/arginine repetitive matrix 1 
MYPOP                 0.030   Myb protein P42POP 
ZNF828                0.030   zinc finger protein 828 
RERE                  0.029   atrophin-1 like protein isoform a 
RERE                  0.029   atrophin-1 like protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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