Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PRG4 Sequence: fasta or formatted (1270aa) NCBI GI: 189181724
Description:

proteoglycan 4 isoform D

Referenced in:

Bone and Related Tissues
Ovary, Uterus and Placenta

Other entries for this name:
alt prot [1363aa] proteoglycan 4 isoform B
alt prot [1311aa] proteoglycan 4 isoform C
alt prot [1404aa] proteoglycan 4 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0        101           3
 C cysteine            1.1         14           2
 D aspartate           2.6         33           1
 E glutamate           7.4         94           2
 F phenylalanine       1.7         21           3
 G glycine             2.8         36           2
 H histidine           0.6          7           1
 I isoleucine          2.5         32           3
 K lysine             11.7        148           3
 L leucine             3.5         45           5
 M methionine          1.0         13           1
 N asparagine          2.4         30           1
 P proline            18.3        233           3
 Q glutamine           2.0         25           2
 R arginine            2.8         36           4
 S serine              4.9         62           2
 T threonine          21.7        275           4
 V valine              2.9         37           2
 W tryptophan          0.6          7           1
 Y tyrosine            1.7         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteoglycan 4 isoform D 
PRG4                  0.992   proteoglycan 4 isoform C 
PRG4                  0.947   proteoglycan 4 isoform B 
PRG4                  0.947   proteoglycan 4 isoform A 
MUC2                  0.142   mucin 2 precursor 
NACA                  0.106   nascent polypeptide-associated complex alpha subuni...
DPCR1                 0.084   diffuse panbronchiolitis critical region 1 protein ...
LOC100294420          0.078   PREDICTED: similar to mucin 2 
LOC100294236          0.075   PREDICTED: similar to diffuse panbronchiolitis crit...
MDC1                  0.069   mediator of DNA-damage checkpoint 1 
MUC17                 0.068   mucin 17 
MUC6                  0.066   mucin 6, gastric 
ZAN                   0.065   zonadhesin isoform 3 
ZAN                   0.065   zonadhesin isoform 6 
TTN                   0.063   titin isoform N2-A 
MUC4                  0.060   mucin 4 isoform a 
LOC284297             0.058   hypothetical protein LOC284297 
PCLO                  0.058   piccolo isoform 2 
PCLO                  0.058   piccolo isoform 1 
MUC5AC                0.057   mucin 5AC 
KIAA0754              0.057   hypothetical protein LOC643314 
MUC5B                 0.056   mucin 5, subtype B, tracheobronchial 
FLJ22184              0.056   PREDICTED: hypothetical protein FLJ22184 
MUC3A                 0.055   PREDICTED: mucin 3A, intestinal 
RAPH1                 0.055   Ras association and pleckstrin homology domains 1 is...
POLR2A                0.053   DNA-directed RNA polymerase II A 
LOC100131514          0.051   PREDICTED: similar to hCG1747327, partial 
MUC3A                 0.050   PREDICTED: mucin 3A, cell surface associated, parti...
NEFH                  0.050   neurofilament, heavy polypeptide 200kDa 
MUC12                 0.049   PREDICTED: mucin 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press