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Search of human proteins with 189409125
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189409125 transcription factor Dp family, member 3 [Homo
sapiens]
(405 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189409125 transcription factor Dp family, member 3 [Homo sapi... 805 0.0
gi|6005900 transcription factor Dp-1 [Homo sapiens] 574 e-164
gi|5454112 transcription factor Dp-2 (E2F dimerization partner 2... 330 2e-90
gi|4503433 E2F transcription factor 3 [Homo sapiens] 38 0.019
gi|22538422 activating transcription factor 2 [Homo sapiens] 37 0.032
gi|38524591 intramembrane protease 5 [Homo sapiens] 37 0.042
gi|134142809 E2F transcription factor 5 isoform 2 [Homo sapiens] 36 0.054
gi|134142811 E2F transcription factor 5 isoform 1 [Homo sapiens] 36 0.054
gi|12669915 E2F transcription factor 4 [Homo sapiens] 36 0.054
gi|12669911 E2F transcription factor 1 [Homo sapiens] 34 0.21
gi|148792970 TAF4b RNA polymerase II, TATA box binding protein (... 34 0.21
gi|83367077 mucin 16 [Homo sapiens] 34 0.27
gi|194688135 high-mobility group box 2 [Homo sapiens] 34 0.27
gi|194688133 high-mobility group box 2 [Homo sapiens] 34 0.27
gi|11321591 high-mobility group box 2 [Homo sapiens] 34 0.27
gi|145580626 E2F transcription factor 7 [Homo sapiens] 34 0.27
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens] 33 0.35
gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens] 33 0.35
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens] 33 0.35
gi|38788319 guanine nucleotide binding protein-like 1 [Homo sapi... 33 0.46
gi|210032580 SET domain containing 1B [Homo sapiens] 33 0.46
gi|157674358 leucine rich repeat containing 50 [Homo sapiens] 33 0.46
gi|30794264 glycosylphosphatidylinositol anchored high density l... 33 0.60
gi|4758226 E2F transcription factor 2 [Homo sapiens] 33 0.60
gi|15812186 F-box only protein 3 isoform 1 [Homo sapiens] 33 0.60
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 32 0.79
gi|115529449 upstream binding transcription factor, RNA polymera... 32 1.0
gi|115529451 upstream binding transcription factor, RNA polymera... 32 1.0
gi|7657671 upstream binding transcription factor, RNA polymerase... 32 1.0
gi|109637795 E2F transcription factor 6 [Homo sapiens] 32 1.0
>gi|189409125 transcription factor Dp family, member 3 [Homo
sapiens]
Length = 405
Score = 805 bits (2079), Expect = 0.0
Identities = 405/405 (100%), Positives = 405/405 (100%)
Query: 1 MAKYVSLTEANEELKVLMDENQTSRPVAVHTSTVNPLGKQLLPKTFGQSSVNIDQQVVIG 60
MAKYVSLTEANEELKVLMDENQTSRPVAVHTSTVNPLGKQLLPKTFGQSSVNIDQQVVIG
Sbjct: 1 MAKYVSLTEANEELKVLMDENQTSRPVAVHTSTVNPLGKQLLPKTFGQSSVNIDQQVVIG 60
Query: 61 MPQRPAASNIPVVGSPNPPSTHFASQNQHSYSSPPWAGQHNRKGEKNGMGLCRLSMKVWE 120
MPQRPAASNIPVVGSPNPPSTHFASQNQHSYSSPPWAGQHNRKGEKNGMGLCRLSMKVWE
Sbjct: 61 MPQRPAASNIPVVGSPNPPSTHFASQNQHSYSSPPWAGQHNRKGEKNGMGLCRLSMKVWE 120
Query: 121 TVQRKGTTSCQEVVGELVAKFRAASNHASPNESAYDVKNIKRRTYDALNVLMAMNIISRE 180
TVQRKGTTSCQEVVGELVAKFRAASNHASPNESAYDVKNIKRRTYDALNVLMAMNIISRE
Sbjct: 121 TVQRKGTTSCQEVVGELVAKFRAASNHASPNESAYDVKNIKRRTYDALNVLMAMNIISRE 180
Query: 181 KKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQQLILQQIAFKNLVLRNQYVEE 240
KKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQQLILQQIAFKNLVLRNQYVEE
Sbjct: 181 KKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQQLILQQIAFKNLVLRNQYVEE 240
Query: 241 QVSQRPLPNSVIHVPFIIISSSKKTVINCSISDDKSEYLFKFNSSFEIHDDTEVLMWMGM 300
QVSQRPLPNSVIHVPFIIISSSKKTVINCSISDDKSEYLFKFNSSFEIHDDTEVLMWMGM
Sbjct: 241 QVSQRPLPNSVIHVPFIIISSSKKTVINCSISDDKSEYLFKFNSSFEIHDDTEVLMWMGM 300
Query: 301 TFGLESGSCSAEDLKMARNLVPKALEPYVTEMAQGTFGGVFTTAGSRSNGTWLSASDLTN 360
TFGLESGSCSAEDLKMARNLVPKALEPYVTEMAQGTFGGVFTTAGSRSNGTWLSASDLTN
Sbjct: 301 TFGLESGSCSAEDLKMARNLVPKALEPYVTEMAQGTFGGVFTTAGSRSNGTWLSASDLTN 360
Query: 361 IAIGMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
IAIGMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD
Sbjct: 361 IAIGMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
>gi|6005900 transcription factor Dp-1 [Homo sapiens]
Length = 410
Score = 574 bits (1479), Expect = e-164
Identities = 309/411 (75%), Positives = 338/411 (82%), Gaps = 7/411 (1%)
Query: 1 MAKYVSLTEANEELKVLMDENQTSRP-----VAVHTSTVNPLGKQLLPKTFGQSSVNIDQ 55
MAK L EAN ELKV +D+N + VAVH STVNPLGKQLLPKTFGQS+VNI Q
Sbjct: 1 MAKDAGLIEANGELKVFIDQNLSPGKGVVSLVAVHPSTVNPLGKQLLPKTFGQSNVNIAQ 60
Query: 56 QVVIGMPQRPAASNIPVVGSPNPPSTHFASQNQHSYSSPPWAGQHNRKGEKNGMGLCRLS 115
QVVIG PQRPAASN VVGSP+ PSTHFASQNQ S SSP AG+ NRKGEKNG GL S
Sbjct: 61 QVVIGTPQRPAASNTLVVGSPHTPSTHFASQNQPSDSSPWSAGKRNRKGEKNGKGLRHFS 120
Query: 116 MKVWETVQRKGTTSCQEVVGELVAKFRAASNHASPNESAYDVKNIKRRTYDALNVLMAMN 175
MKV E VQRKGTTS EV ELVA+F AA NH PNESAYD KNI+RR YDALNVLMAMN
Sbjct: 121 MKVCEKVQRKGTTSYNEVADELVAEFSAADNHILPNESAYDQKNIRRRVYDALNVLMAMN 180
Query: 176 IISREKKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQQLILQQIAFKNLVLRN 235
IIS+EKK+IKWIGL TNSAQ CQNL VERQ+RLERIKQKQS+LQ+LILQQIAFKNLV RN
Sbjct: 181 IISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRN 240
Query: 236 QYVEEQVSQRPLPNSVIHVPFIIISSSKKTVINCSISDDKSEYLFKFNSSFEIHDDTEVL 295
++ E+Q S+ P PNSVIH+PFII+++SKKTVI+CSIS+DK EYLF F+++FEIHDD EVL
Sbjct: 241 RHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVL 300
Query: 296 MWMGMTFGLESGSCSAEDLKMARNLVPKALEPYVTEMAQGTFGGVF-TTAGSRSNGTWLS 354
MGM GLESGSCSAEDLKMAR+LVPKALEPYVTEMAQGT GGVF TTAGS SNGT S
Sbjct: 301 KRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQGTVGGVFITTAGSTSNGTRFS 360
Query: 355 ASDLTNIAIGMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
ASDLTN A GMLATSS GSQYSGSRVETP V E+D DDD +ENDEDD
Sbjct: 361 ASDLTNGADGMLATSSNGSQYSGSRVETP-VSYVGEDDEEDDDFNENDEDD 410
>gi|5454112 transcription factor Dp-2 (E2F dimerization partner 2)
[Homo sapiens]
Length = 386
Score = 330 bits (845), Expect = 2e-90
Identities = 188/384 (48%), Positives = 248/384 (64%), Gaps = 42/384 (10%)
Query: 57 VVIGMPQRPAASNIPVVGSPNPPSTHFASQNQHSYSSPPWA-----------------GQ 99
++I PQR +S ++GSP P+ +Q H + W +
Sbjct: 1 MIISTPQRLTSSGSVLIGSPYTPAPAMVTQT-HIAEATGWVPGDRKRARKFIDSDFSESK 59
Query: 100 HNRKGEKNGMGLCRLSMKVWETVQRKGTTSCQEVVGELVAKFRAASNHASPNESAYDVKN 159
++KG+KNG GL SMKV E VQRKGTTS EV ELV++F ++NH + + AYD KN
Sbjct: 60 RSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSQAYDQKN 119
Query: 160 IKRRTYDALNVLMAMNIISREKKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQ 219
I+RR YDALNVLMAMNIIS+EKK+IKWIGL TNSAQ CQNL +E+Q+R+ERIKQK+++LQ
Sbjct: 120 IRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQ 179
Query: 220 QLILQQIAFKNLVLRNQYVEEQVSQRPLPNSVIHVPFIIISSSKKTVINCSISDDKSEYL 279
+L+LQQIAFKNLV RN+ E+Q P NS I +PFIII++S+KTVI+CSIS DK EYL
Sbjct: 180 ELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYL 239
Query: 280 FKFNSSFEIHDDTEVLMWMGMTFGLESGSCSAEDLKMARNLVPKALEPYVTEMAQG---- 335
F F+++FEIHDD EVL MGM+FGLESG CS EDLK+A++LVPKALE Y+T+++ G
Sbjct: 240 FNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDISTGPSWL 299
Query: 336 TFGGVFTTAGSRSN-----GTWLSASDLTN---------IAIGML------ATSSGGSQY 375
G + + S SN G L S + +A G +SS S
Sbjct: 300 NQGLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLAPNSHQSSSAASHC 359
Query: 376 SGSRVETPAVEEEEEEDNNDDDLS 399
S SR ETP +E+E+++++D S
Sbjct: 360 SESRGETPCSFNDEDEEDDEEDSS 383
>gi|4503433 E2F transcription factor 3 [Homo sapiens]
Length = 465
Score = 37.7 bits (86), Expect = 0.019
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 151 NESAYDVKNIKRRTYDALNVLMAMNIISRE-KKKIKWIGLTTNS----AQNCQNLRVERQ 205
N++A +K KRR YD NVL +++I ++ K ++W+G + + CQ L
Sbjct: 205 NKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGL----S 260
Query: 206 KRLERIKQKQSELQQLI 222
K + + Q++ +L +LI
Sbjct: 261 KEVTELSQEEKKLDELI 277
>gi|22538422 activating transcription factor 2 [Homo sapiens]
Length = 505
Score = 37.0 bits (84), Expect = 0.032
Identities = 36/186 (19%), Positives = 79/186 (42%), Gaps = 7/186 (3%)
Query: 42 LPKTFGQSSVNIDQQVVIGMPQR--PAASNIPVVGSPNPPSTHFASQNQHSYSS--PPWA 97
+P + S+V++ V + P P+ IP SP P + + + + + PP
Sbjct: 231 IPASITSSNVHVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVT 290
Query: 98 GQHNRKGEKNGMGLCRLSMKVWETVQRKGTTSCQEVVGELVAKFRAASNHASPNESAYDV 157
KG +G+ + +++Q+ T++ + + S +A +
Sbjct: 291 NGDTVKGHGSGLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSGRRRRAANED 350
Query: 158 KNIKRRTYDALNVLMAMNIISREKKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSE 217
+ KRR + N A R+K+K+ W+ A++ +L + Q + ++ + ++
Sbjct: 351 PDEKRRKFLERNRAAASRC--RQKRKV-WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 407
Query: 218 LQQLIL 223
L+QL+L
Sbjct: 408 LKQLLL 413
>gi|38524591 intramembrane protease 5 [Homo sapiens]
Length = 684
Score = 36.6 bits (83), Expect = 0.042
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 61 MPQRPAASNIPVVGSPNPPST--HFASQNQHSYSSPPWAGQHNRKGEK 106
MP P A IP++ PPS H +Q Q + PWAG H RKG K
Sbjct: 626 MPLMPMAMLIPLMPLMPPPSELGHVHAQAQAHETGLPWAGLHKRKGLK 673
>gi|134142809 E2F transcription factor 5 isoform 2 [Homo sapiens]
Length = 345
Score = 36.2 bits (82), Expect = 0.054
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 126 GTTSCQEVVGELVAKFRAASNHASPN----ESAYDVKNI--KRRTYDALNVLMAMNIISR 179
G++ ++ +G L KF + A ++A D + KRR YD NVL +++I +
Sbjct: 47 GSSRHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEK 106
Query: 180 E-KKKIKW--IGLTTNSAQNCQNLRVERQKRLERIKQKQSEL-QQLILQQIAFKNLV 232
+ K I+W +G N+ + LR + + +E ++ K+ EL QQ + Q + KN++
Sbjct: 107 KSKNSIQWKGVGAGCNTKEVIDRLRYLKAE-IEDLELKERELDQQKLWLQQSIKNVM 162
>gi|134142811 E2F transcription factor 5 isoform 1 [Homo sapiens]
Length = 346
Score = 36.2 bits (82), Expect = 0.054
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 126 GTTSCQEVVGELVAKFRAASNHASPN----ESAYDVKNI--KRRTYDALNVLMAMNIISR 179
G++ ++ +G L KF + A ++A D + KRR YD NVL +++I +
Sbjct: 47 GSSRHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEK 106
Query: 180 E-KKKIKW--IGLTTNSAQNCQNLRVERQKRLERIKQKQSEL-QQLILQQIAFKNLV 232
+ K I+W +G N+ + LR + + +E ++ K+ EL QQ + Q + KN++
Sbjct: 107 KSKNSIQWKGVGAGCNTKEVIDRLRYLKAE-IEDLELKERELDQQKLWLQQSIKNVM 162
>gi|12669915 E2F transcription factor 4 [Homo sapiens]
Length = 413
Score = 36.2 bits (82), Expect = 0.054
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 161 KRRTYDALNVLMAMNIISRE-KKKIKW--IGLTTNSAQNCQNLRVERQKRLERIKQKQSE 217
KRR YD NVL + +I ++ K I+W +G N+ + L +E + +E ++Q++ E
Sbjct: 55 KRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKL-IELKAEIEELQQREQE 113
Query: 218 LQQ 220
L Q
Sbjct: 114 LDQ 116
>gi|12669911 E2F transcription factor 1 [Homo sapiens]
Length = 437
Score = 34.3 bits (77), Expect = 0.21
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 62 PQRPAASNIPVVGSPNPPSTHFASQNQHSY---SSPP--WAGQHNRKGEKNGMGLCRLSM 116
P+ ++ P +G P P + H Y SS P G+H KG K+ R
Sbjct: 72 PRPTPSAPRPALGRP-PVKRRLDLETDHQYLAESSGPARGRGRHPGKGVKSPGEKSR--- 127
Query: 117 KVWETVQRKGTTSCQEVVGELVAKFRAASNHASPNESAYDVKNIKRRTYDALNVLMAMNI 176
+ET T E++ +A N +A +K KRR YD NVL + +
Sbjct: 128 --YETSLNLTTKRFLELLSH------SADGVVDLNWAAEVLKVQKRRIYDITNVLEGIQL 179
Query: 177 ISREKKK-IKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQQ 220
I+++ K I+W+G T V RLE + Q +LQ+
Sbjct: 180 IAKKSKNHIQWLGSHTT---------VGVGGRLEGLTQDLRQLQE 215
>gi|148792970 TAF4b RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 105kDa [Homo sapiens]
Length = 862
Score = 34.3 bits (77), Expect = 0.21
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 131 QEVVGELVAKFRAASNHASPNESAYDVKNIKRRTYDALNVLMAMNIISREKKKIKWIGLT 190
QE + L+ K A + H A + + T L L ++ + +++K ++ +
Sbjct: 689 QERLRGLLEKLTAIAQHRMTTYKASENYILCSDTRSQLKFLEKLDQLEKQRKDLEEREML 748
Query: 191 TNSAQNCQNLRVERQKRLERIKQKQSELQQLILQQIAFKNLVLRNQYVEEQVSQRPLPNS 250
+A++ N Q RL KQK ELQQL L QI ++ L +RPL +
Sbjct: 749 LKAAKSRSNKEDPEQLRL---KQKAKELQQLELAQIQHRDANLTALAAIGPRKKRPLESG 805
Query: 251 V 251
+
Sbjct: 806 I 806
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 33.9 bits (76), Expect = 0.27
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 5 VSLTEANEELKVLMDENQTSRPVAVHTSTVNPLGKQLLPKTFGQSSVNIDQQVVIGMPQR 64
++ TE +E + +TS P A T T P G + + T SS+ +++ + G+
Sbjct: 1896 MTYTEKSEVSSSIHPRPETSAPGAETTLTSTP-GNRAISLTLPFSSIPVEEVISTGITSG 1954
Query: 65 PAASNIPVVGSP-NPPSTHFASQNQHSYSSPP 95
P ++ P+ SP PP+ + S S+ P
Sbjct: 1955 PDINSAPMTHSPITPPTIVWTSTGTIEQSTQP 1986
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 33.9 bits (76), Expect = 0.27
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 367 ATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
A G + +GS+ + +EEEEE+ D+D E DED+
Sbjct: 170 AGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDE 208
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 33.9 bits (76), Expect = 0.27
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 367 ATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
A G + +GS+ + +EEEEE+ D+D E DED+
Sbjct: 170 AGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDE 208
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 33.9 bits (76), Expect = 0.27
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 367 ATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
A G + +GS+ + +EEEEE+ D+D E DED+
Sbjct: 170 AGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDE 208
>gi|145580626 E2F transcription factor 7 [Homo sapiens]
Length = 911
Score = 33.9 bits (76), Expect = 0.27
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 136 ELVAKFRAASNHASPNESAYDVKNIKRRTYDALNVLMAMNIISR--------EKKKIKWI 187
++ AK + +P+ S + K RR YD NVL ++ +I + K KWI
Sbjct: 309 DVAAKILIEESQDAPDHSKFKTK--VRRLYDIANVLTSLALIKKVHVTEERGRKPAFKWI 366
Query: 188 GLTTNSAQNCQNLRVERQKRLERIKQKQSELQQLILQQIAFK---NLVLRNQYVEEQVSQ 244
G S+ + + + V E ++ ++Q Q++A N V ++ ++ +V+
Sbjct: 367 GPVDFSSSDEELVDVSASVLPELKRETYGQIQVCAKQKLARHGSFNTVQASERIQRKVNS 426
Query: 245 RP 246
P
Sbjct: 427 EP 428
Score = 31.6 bits (70), Expect = 1.3
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 149 SPNESAYDVKNIKRRTYDALNVLMAMNIISR-EKKKIKWIGLTT--NSAQNCQNLRVERQ 205
S +E A + +RR YD +NVL +++++SR K + W G + + +N Q L E
Sbjct: 171 SLDEVAVSLGVERRRIYDIVNVLESLHLVSRVAKNQYGWHGRHSLPKTLRNLQRLGEE-- 228
Query: 206 KRLERIKQKQSELQQLILQQIAFK 229
++ +++ + LQQ L I +K
Sbjct: 229 ---QKYEEQMAYLQQKELDLIDYK 249
>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
Length = 259
Score = 33.5 bits (75), Expect = 0.35
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 364 GMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDED 404
G + GGS+ +V+ A E+++++D DDD ++D+D
Sbjct: 140 GKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD 180
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 357 DLTNIAIGMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
D+ ++I ++ GG GS+V V+ +ED++DDD ++DEDD
Sbjct: 132 DVKLLSISGKRSAPGG----GSKVPQKKVKLAADEDDDDDDEEDDDEDD 176
>gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens]
Length = 265
Score = 33.5 bits (75), Expect = 0.35
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 364 GMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDED 404
G + GGS+ +V+ A E+++++D DDD ++D+D
Sbjct: 140 GKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD 180
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 357 DLTNIAIGMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
D+ ++I ++ GG GS+V V+ +ED++DDD ++DEDD
Sbjct: 132 DVKLLSISGKRSAPGG----GSKVPQKKVKLAADEDDDDDDEEDDDEDD 176
>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
Length = 294
Score = 33.5 bits (75), Expect = 0.35
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 364 GMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDED 404
G + GGS+ +V+ A E+++++D DDD ++D+D
Sbjct: 140 GKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD 180
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 357 DLTNIAIGMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
D+ ++I ++ GG GS+V V+ +ED++DDD ++DEDD
Sbjct: 132 DVKLLSISGKRSAPGG----GSKVPQKKVKLAADEDDDDDDEEDDDEDD 176
>gi|38788319 guanine nucleotide binding protein-like 1 [Homo
sapiens]
Length = 607
Score = 33.1 bits (74), Expect = 0.46
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 315 KMARNLVPKALEPYVTEMAQGTFGGVFTTAG-SRSNGTWLSASDLTNIAIGMLATSSGGS 373
K ARN V +A + G F G S GTW S + T + + G
Sbjct: 492 KAARNDVYRAANSLLRLAVDGRLSLCFHPPGYSEQKGTWESHPETTELVVLQGRVGPAGD 551
Query: 374 QYSGSRVETPAVEEEEEEDNND-DDLSENDED 404
+ E + EEE E++ D D+ E DE+
Sbjct: 552 EEEEEEEELSSSCEEEGEEDRDADEEGEGDEE 583
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 33.1 bits (74), Expect = 0.46
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 381 ETPAVEEEEEEDNNDDDLSENDEDD 405
E A EEEEEED++DDD + DE +
Sbjct: 1051 EEEAEEEEEEEDDDDDDSDDRDESE 1075
Score = 30.8 bits (68), Expect = 2.3
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 373 SQYSGSRVETPAVEEEEEEDNNDD------DLSENDEDD 405
S+ S E EEEEEE+++DD D SEND++D
Sbjct: 1042 SEEQESTEEEEEAEEEEEEEDDDDDDSDDRDESENDDED 1080
>gi|157674358 leucine rich repeat containing 50 [Homo sapiens]
Length = 725
Score = 33.1 bits (74), Expect = 0.46
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 9 EANEELKVLMDENQTSRPVAVHTSTVNPLGKQLLPKTFGQSSVNIDQQVVIGMPQRPAAS 68
EA +L++ + ++ RP+ S +P G+ L+P T + + + A+S
Sbjct: 628 EAKRDLEIRKQDTKSPRPLIQELSDEDPSGQLLMPPTCQRDAAPLTSSGDRDSDFLAASS 687
Query: 69 NIPVVGSPNPPSTHFASQNQHSYSSPPW 96
+P + PP T Q S + P W
Sbjct: 688 PVPTESAATPPET-CVGVAQPSQALPTW 714
>gi|30794264 glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1 [Homo sapiens]
Length = 184
Score = 32.7 bits (73), Expect = 0.60
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 379 RVETPAVEEEEEEDNNDDDLSENDEDD 405
R +T EEEE+ED+ DD E DED+
Sbjct: 19 RGQTQQEEEEEDEDHGPDDYDEEDEDE 45
>gi|4758226 E2F transcription factor 2 [Homo sapiens]
Length = 437
Score = 32.7 bits (73), Expect = 0.60
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 161 KRRTYDALNVLMAMNIISRE-KKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQ 219
KRR YD NVL + +I ++ K I+W+G + + + L+ + + L
Sbjct: 166 KRRIYDITNVLEGIQLIRKKAKNNIQWVGRGMFEDPTRPGKQQQLGQELKELMNTEQALD 225
Query: 220 QLILQ-QIAFKNL 231
QLI ++FK+L
Sbjct: 226 QLIQSCSLSFKHL 238
>gi|15812186 F-box only protein 3 isoform 1 [Homo sapiens]
Length = 471
Score = 32.7 bits (73), Expect = 0.60
Identities = 15/22 (68%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 386 EEEEEEDNNDD--DLSENDEDD 405
EEEEEED +DD D+ E+DEDD
Sbjct: 428 EEEEEEDEDDDSADMDESDEDD 449
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 32.3 bits (72), Expect = 0.79
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 369 SSGGSQ-YSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
SSG ++ S+ E EE+EE+D DD+ E DEDD
Sbjct: 2421 SSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDD 2458
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 32.0 bits (71), Expect = 1.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 364 GMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
G + G S S S E+ +E EE+D ++DD ++DED+
Sbjct: 663 GDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDE 704
Score = 30.0 bits (66), Expect = 3.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 386 EEEEEEDNNDDDLSENDEDD 405
EE++EED +D+D E +EDD
Sbjct: 641 EEDDEEDEDDEDEDEEEEDD 660
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 32.0 bits (71), Expect = 1.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 364 GMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
G + G S S S E+ +E EE+D ++DD ++DED+
Sbjct: 663 GDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDE 704
Score = 30.0 bits (66), Expect = 3.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 386 EEEEEEDNNDDDLSENDEDD 405
EE++EED +D+D E +EDD
Sbjct: 641 EEDDEEDEDDEDEDEEEEDD 660
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 32.0 bits (71), Expect = 1.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 364 GMLATSSGGSQYSGSRVETPAVEEEEEEDNNDDDLSENDEDD 405
G + G S S S E+ +E EE+D ++DD ++DED+
Sbjct: 700 GDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDE 741
Score = 30.0 bits (66), Expect = 3.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 386 EEEEEEDNNDDDLSENDEDD 405
EE++EED +D+D E +EDD
Sbjct: 678 EEDDEEDEDDEDEDEEEEDD 697
>gi|109637795 E2F transcription factor 6 [Homo sapiens]
Length = 281
Score = 32.0 bits (71), Expect = 1.0
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 161 KRRTYDALNVLMAMNIISREKKK-IKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQ 219
KRR YD NVL ++++ ++ K I+WIG ++ V +QK+L Q EL
Sbjct: 100 KRRVYDITNVLDGIDLVEKKSKNHIRWIGSDLSNFG-----AVPQQKKL------QEELS 148
Query: 220 QLILQQIAFKNLV 232
L + A L+
Sbjct: 149 DLSAMEDALDELI 161
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,120,163
Number of Sequences: 37866
Number of extensions: 687968
Number of successful extensions: 6275
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 5402
Number of HSP's gapped (non-prelim): 666
length of query: 405
length of database: 18,247,518
effective HSP length: 105
effective length of query: 300
effective length of database: 14,271,588
effective search space: 4281476400
effective search space used: 4281476400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.