Guide to the Human Genome
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Name: E2F1 Sequence: fasta or formatted (437aa) NCBI GI: 12669911
Description:

E2F transcription factor 1

Referenced in:

E2F Pathways
MicroRNAs
RB1 and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         39           2
 C cysteine            1.4          6           1
 D aspartate           6.6         29           1
 E glutamate           7.3         32           3
 F phenylalanine       2.3         10           1
 G glycine             7.1         31           2
 H histidine           2.1          9           1
 I isoleucine          3.9         17           2
 K lysine              3.2         14           2
 L leucine            13.0         57           3
 M methionine          1.1          5           1
 N asparagine          1.6          7           1
 P proline             9.4         41           3
 Q glutamine           5.3         23           2
 R arginine            5.5         24           2
 S serine              9.4         41           2
 T threonine           5.5         24           2
 V valine              4.8         21           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   E2F transcription factor 1 
E2F3                  0.300   E2F transcription factor 3 
E2F2                  0.286   E2F transcription factor 2 
E2F6                  0.160   E2F transcription factor 6 
E2F5                  0.144   E2F transcription factor 5 isoform 2 
E2F5                  0.141   E2F transcription factor 5 isoform 1 
E2F4                  0.133   E2F transcription factor 4 
E2F5                  0.037   E2F transcription factor 5 isoform 3 
E2F8                  0.036   E2F family member 8 
E2F7                  0.030   E2F transcription factor 7 
BAT2D1                0.019   HBxAg transactivated protein 2 
KRTAP4-6              0.018   PREDICTED: keratin associated protein 4.6 
LIX1L                 0.018   Lix1 homolog (mouse) like 
AKT1S1                0.018   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.018   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.018   AKT1 substrate 1 (proline-rich) 
TFDP1                 0.018   transcription factor Dp-1 
SCLT1                 0.018   sodium channel associated protein 1 
DSCAML1               0.017   Down syndrome cell adhesion molecule like 1 
SFPQ                  0.017   splicing factor proline/glutamine rich (polypyrimidin...
TAF4                  0.017   TBP-associated factor 4 
BAT2                  0.017   HLA-B associated transcript-2 
CPSF6                 0.015   cleavage and polyadenylation specific factor 6, 68 ...
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.015   PREDICTED: hypothetical protein LOC80164 
BRD8                  0.015   bromodomain containing 8 isoform 1 
TNRC18                0.014   trinucleotide repeat containing 18 
WHAMM                 0.014   WAS protein homolog associated with actin, golgi me...
LBXCOR1               0.014   LBXCOR1 homolog 
SPEG                  0.014   SPEG complex locus 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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