Guide to the Human Genome
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Name: HMGB2 Sequence: fasta or formatted (209aa) NCBI GI: 11321591
Description:

high-mobility group box 2

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt mRNA [209aa] high-mobility group box 2
alt mRNA [209aa] high-mobility group box 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         15           2
 C cysteine            1.4          3           1
 D aspartate           7.2         15           1
 E glutamate          15.8         33           8
 F phenylalanine       3.8          8           2
 G glycine             6.2         13           1
 H histidine           1.9          4           1
 I isoleucine          1.4          3           1
 K lysine             19.1         40           3
 L leucine             1.9          4           1
 M methionine          2.9          6           1
 N asparagine          2.4          5           1
 P proline             7.2         15           2
 Q glutamine           1.9          4           1
 R arginine            4.3          9           1
 S serine              8.1         17           2
 T threonine           1.9          4           1
 V valine              1.4          3           1
 W tryptophan          1.0          2           1
 Y tyrosine            2.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   high-mobility group box 2 
HMGB2                 1.000   high-mobility group box 2 
HMGB2                 1.000   high-mobility group box 2 
HMGB1                 0.820   high-mobility group box 1 
HMGB1L1               0.769   high-mobility group box 1-like 1 
HMGB3                 0.689   high-mobility group box 3 
LOC646993             0.608   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.608   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.608   PREDICTED: similar to high mobility group box 3 [Ho...
LOC441795             0.603   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.603   PREDICTED: high mobility group protein B3-like prot...
SP100                 0.584   nuclear antigen Sp100 isoform 2 
LOC203510             0.577   PREDICTED: similar to hCG1644442 
LOC203510             0.577   PREDICTED: similar to hCG1644442 
LOC203510             0.577   PREDICTED: hypothetical protein LOC203510 
LOC645490             0.569   PREDICTED: similar to hCG1991922 
LOC645490             0.569   PREDICTED: similar to hCG1991922 
LOC645490             0.564   PREDICTED: similar to hCG1991922 
LOC729595             0.552   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.552   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.552   PREDICTED: similar to high mobility group box 3 iso...
LOC729595             0.414   PREDICTED: similar to high mobility group box 3 iso...
HMGB4                 0.328   HMG2 like isoform 1 
LOC644129             0.314   PREDICTED: similar to hCG1647425 
LOC644129             0.314   PREDICTED: similar to hCG1647425 
LOC644129             0.253   PREDICTED: similar to hCG1647425 
SSRP1                 0.165   structure specific recognition protein 1 
HMGB4                 0.153   HMG2 like isoform 2 
UBTF                  0.131   upstream binding transcription factor, RNA polymera...
UBTF                  0.131   upstream binding transcription factor, RNA polymera...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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